data_1YT0 # _model_server_result.job_id XZShZA-IxYL6Bebwj-hQXA _model_server_result.datetime_utc '2024-11-28 18:14:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1yt0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":302}' # _entry.id 1YT0 # _exptl.entry_id 1YT0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 194.226 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TETRAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1YT0 _cell.length_a 65.91 _cell.length_b 94.86 _cell.length_c 42.91 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YT0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 J O HOH . A HOH 4 1_555 B MG MG . A MG 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? metalc ? metalc2 J O HOH . A HOH 5 1_555 B MG MG . A MG 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.587 ? metalc ? metalc3 A OD1 ASN 43 A ASN 107 1_555 B MG MG . A MG 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? metalc ? metalc4 B MG MG . A MG 338 1_555 C O1B ADP . A ADP 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc5 B MG MG . A MG 338 1_555 C O2A ADP . A ADP 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.568 ? # _chem_comp.formula 'C8 H18 O5' _chem_comp.formula_weight 194.226 _chem_comp.id PG4 _chem_comp.mon_nstd_flag . _chem_comp.name 'TETRAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 PG4 sing 281 n n O1 HO1 PG4 sing 282 n n C1 C2 PG4 sing 283 n n C1 H11 PG4 sing 284 n n C1 H12 PG4 sing 285 n n C2 O2 PG4 sing 286 n n C2 H21 PG4 sing 287 n n C2 H22 PG4 sing 288 n n O2 C3 PG4 sing 289 n n C3 C4 PG4 sing 290 n n C3 H31 PG4 sing 291 n n C3 H32 PG4 sing 292 n n C4 O3 PG4 sing 293 n n C4 H41 PG4 sing 294 n n C4 H42 PG4 sing 295 n n O3 C5 PG4 sing 296 n n C5 C6 PG4 sing 297 n n C5 H51 PG4 sing 298 n n C5 H52 PG4 sing 299 n n C6 O4 PG4 sing 300 n n C6 H61 PG4 sing 301 n n C6 H62 PG4 sing 302 n n O4 C7 PG4 sing 303 n n C7 C8 PG4 sing 304 n n C7 H71 PG4 sing 305 n n C7 H72 PG4 sing 306 n n C8 O5 PG4 sing 307 n n C8 H81 PG4 sing 308 n n C8 H82 PG4 sing 309 n n O5 HO5 PG4 sing 310 n n # _atom_sites.entry_id 1YT0 _atom_sites.fract_transf_matrix[1][1] 0.015172 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010542 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023305 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 338 1 MG MG . C 3 ADP A 1 339 1 ADP ADP . D 4 PG4 A 1 301 1 PG4 PG4 . E 4 PG4 A 1 302 2 PG4 PG4 . F 4 PG4 A 1 306 6 PG4 PG4 . G 4 PG4 A 1 307 7 PG4 PG4 . H 4 PG4 A 1 308 8 PG4 PG4 . I 4 PG4 A 1 309 9 PG4 PG4 . J 5 HOH A 1 1 1 HOH HOH . J 5 HOH A 2 2 2 HOH HOH . J 5 HOH A 3 3 3 HOH HOH . J 5 HOH A 4 4 4 HOH HOH . J 5 HOH A 5 5 5 HOH HOH . J 5 HOH A 6 6 6 HOH HOH . J 5 HOH A 7 7 7 HOH HOH . J 5 HOH A 8 8 8 HOH HOH . J 5 HOH A 9 9 9 HOH HOH . J 5 HOH A 10 10 10 HOH HOH . J 5 HOH A 11 11 11 HOH HOH . J 5 HOH A 12 12 12 HOH HOH . J 5 HOH A 13 13 13 HOH HOH . J 5 HOH A 14 14 14 HOH HOH . J 5 HOH A 15 15 15 HOH HOH . J 5 HOH A 16 16 16 HOH HOH . J 5 HOH A 17 17 17 HOH HOH . J 5 HOH A 18 18 18 HOH HOH . J 5 HOH A 19 19 19 HOH HOH . J 5 HOH A 20 20 20 HOH HOH . J 5 HOH A 21 21 21 HOH HOH . J 5 HOH A 22 22 22 HOH HOH . J 5 HOH A 23 23 23 HOH HOH . J 5 HOH A 24 24 24 HOH HOH . J 5 HOH A 25 25 25 HOH HOH . J 5 HOH A 26 26 26 HOH HOH . J 5 HOH A 27 27 27 HOH HOH . J 5 HOH A 28 28 28 HOH HOH . J 5 HOH A 29 29 29 HOH HOH . J 5 HOH A 30 30 30 HOH HOH . J 5 HOH A 31 31 31 HOH HOH . J 5 HOH A 32 32 32 HOH HOH . J 5 HOH A 33 33 33 HOH HOH . J 5 HOH A 34 34 34 HOH HOH . J 5 HOH A 35 35 35 HOH HOH . J 5 HOH A 36 36 36 HOH HOH . J 5 HOH A 37 37 37 HOH HOH . J 5 HOH A 38 38 38 HOH HOH . J 5 HOH A 39 39 39 HOH HOH . J 5 HOH A 40 40 40 HOH HOH . J 5 HOH A 41 41 41 HOH HOH . J 5 HOH A 42 42 42 HOH HOH . J 5 HOH A 43 43 43 HOH HOH . J 5 HOH A 44 44 44 HOH HOH . J 5 HOH A 45 45 45 HOH HOH . J 5 HOH A 46 46 46 HOH HOH . J 5 HOH A 47 47 47 HOH HOH . J 5 HOH A 48 48 48 HOH HOH . J 5 HOH A 49 49 49 HOH HOH . J 5 HOH A 50 50 50 HOH HOH . J 5 HOH A 51 51 51 HOH HOH . J 5 HOH A 52 52 52 HOH HOH . J 5 HOH A 53 53 53 HOH HOH . J 5 HOH A 54 54 54 HOH HOH . J 5 HOH A 55 55 55 HOH HOH . J 5 HOH A 56 56 56 HOH HOH . J 5 HOH A 57 57 57 HOH HOH . J 5 HOH A 58 58 58 HOH HOH . J 5 HOH A 59 59 59 HOH HOH . J 5 HOH A 60 60 60 HOH HOH . J 5 HOH A 61 61 61 HOH HOH . J 5 HOH A 62 62 62 HOH HOH . J 5 HOH A 63 63 63 HOH HOH . J 5 HOH A 64 64 64 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PG4 . . . E 4 -0.619 11.254 10.767 1 100.15 ? O1 PG4 302 A 1 HETATM 2 C C1 PG4 . . . E 4 -0.135 11.922 9.599 1 100.17 ? C1 PG4 302 A 1 HETATM 3 C C2 PG4 . . . E 4 -0.531 13.398 9.653 1 100.11 ? C2 PG4 302 A 1 HETATM 4 O O2 PG4 . . . E 4 -1.96 13.544 9.706 1 100.1 ? O2 PG4 302 A 1 HETATM 5 C C3 PG4 . . . E 4 -2.316 14.934 9.779 1 100.15 ? C3 PG4 302 A 1 HETATM 6 C C4 PG4 . . . E 4 -1.748 15.542 11.052 1 99.92 ? C4 PG4 302 A 1 HETATM 7 O O3 PG4 . . . E 4 -2.038 16.942 11.172 1 99.18 ? O3 PG4 302 A 1 HETATM 8 C C5 PG4 . . . E 4 -1.414 17.359 12.394 1 98.39 ? C5 PG4 302 A 1 HETATM 9 C C6 PG4 . . . E 4 -1.543 18.851 12.657 1 97.88 ? C6 PG4 302 A 1 HETATM 10 O O4 PG4 . . . E 4 -0.881 19.158 13.895 1 98.33 ? O4 PG4 302 A 1 HETATM 11 C C7 PG4 . . . E 4 0.51 18.803 13.831 1 97.55 ? C7 PG4 302 A 1 HETATM 12 C C8 PG4 . . . E 4 1.192 19.079 15.16 1 98 ? C8 PG4 302 A 1 HETATM 13 O O5 PG4 . . . E 4 2.572 18.698 15.061 1 97.67 ? O5 PG4 302 A 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 345 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 13 #