data_1YT5
#
_model_server_result.job_id            MT8ouIh8qAy9-ub01vx5VQ 
_model_server_result.datetime_utc      '2025-04-12 11:57:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1yt5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"V","auth_seq_id":315}' 
#
_entry.id    1YT5 
#
_exptl.entry_id    1YT5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              96.063 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SULFATE ION' 
_entity.pdbx_number_of_molecules    18 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1YT5 
_cell.length_a            131.448 
_cell.length_b            137.153 
_cell.length_c            58.253 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1YT5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
? dimeric 2 author_defined_assembly 2 
PISA tetrameric 4 software_defined_assembly 3 
PISA tetrameric 4 software_defined_assembly 4 
PISA dimeric 2 software_defined_assembly 5 
PISA dimeric 2 software_defined_assembly 6 
PISA dimeric 2 software_defined_assembly 7 
PISA dimeric 2 software_defined_assembly 8 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,G,H,I,J,P,Q,R,S,T,U,V,W,Z 1 1 
B,C,K,L,M,N,O,X,Y 2 1 
A,D,E,F,G,H,I,J,P,Q,R,S,T,U,V,W,Z 3 1 
B,C,K,L,M,N,O,X,Y 3 2 
A,D,E,F,G,H,I,J,P,Q,R,S,T,U,V,W,Z 4 1 
B,C,K,L,M,N,O,X,Y 4 3 
A,E,F,G,H,I,J,W 5 1 
B,K,L,M,X 5 2 
D,P,Q,R,S,T,U,V,Z 6 1 
C,N,O,Y 6 2 
A,E,F,G,H,I,J,W 7 1 
B,K,L,M,X 7 3 
D,P,Q,R,S,T,U,V,Z 8 1 
C,N,O,Y 8 3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_555 x+1/2,-y+1/2,-z 1 0 0 0 -1 0 0 0 -1 65.724 68.5765 0 
3 'crystal symmetry operation' 4_556 x+1/2,-y+1/2,-z+1 1 0 0 0 -1 0 0 0 -1 65.724 68.5765 58.253 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
? 2 Q N N 
? 2 R N N 
? 2 S N N 
? 2 T N N 
? 2 U N N 
? 2 V N N 
#
_chem_comp.formula           'O4 S -2' 
_chem_comp.formula_weight    96.063 
_chem_comp.id                SO4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SULFATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O1 SO4 doub 290 n n 
S O2 SO4 doub 291 n n 
S O3 SO4 sing 292 n n 
S O4 SO4 sing 293 n n 
#
_atom_sites.entry_id                     1YT5 
_atom_sites.fract_transf_matrix[1][1]    0.007608 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007291 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017166 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 SO4 A 1 301 1 SO4 SO4 . 
F 2 SO4 A 1 304 4 SO4 SO4 . 
G 2 SO4 A 1 309 9 SO4 SO4 . 
H 2 SO4 A 1 313 13 SO4 SO4 . 
I 2 SO4 A 1 316 16 SO4 SO4 . 
J 2 SO4 A 1 317 17 SO4 SO4 . 
K 2 SO4 B 1 302 2 SO4 SO4 . 
L 2 SO4 B 1 310 10 SO4 SO4 . 
M 2 SO4 B 1 318 18 SO4 SO4 . 
N 2 SO4 C 1 305 5 SO4 SO4 . 
O 2 SO4 C 1 307 7 SO4 SO4 . 
P 2 SO4 D 1 303 3 SO4 SO4 . 
Q 2 SO4 D 1 306 6 SO4 SO4 . 
R 2 SO4 D 1 308 8 SO4 SO4 . 
S 2 SO4 D 1 311 11 SO4 SO4 . 
T 2 SO4 D 1 312 12 SO4 SO4 . 
U 2 SO4 D 1 314 14 SO4 SO4 . 
V 2 SO4 D 1 315 15 SO4 SO4 . 
W 3 HOH A 1 318 11 HOH HOH . 
W 3 HOH A 2 319 17 HOH HOH . 
W 3 HOH A 3 320 18 HOH HOH . 
W 3 HOH A 4 321 19 HOH HOH . 
W 3 HOH A 5 322 26 HOH HOH . 
W 3 HOH A 6 323 28 HOH HOH . 
W 3 HOH A 7 324 49 HOH HOH . 
W 3 HOH A 8 325 51 HOH HOH . 
W 3 HOH A 9 326 54 HOH HOH . 
W 3 HOH A 10 327 56 HOH HOH . 
W 3 HOH A 11 328 57 HOH HOH . 
W 3 HOH A 12 329 73 HOH HOH . 
W 3 HOH A 13 330 78 HOH HOH . 
W 3 HOH A 14 331 83 HOH HOH . 
W 3 HOH A 15 332 86 HOH HOH . 
W 3 HOH A 16 333 91 HOH HOH . 
W 3 HOH A 17 334 92 HOH HOH . 
W 3 HOH A 18 335 96 HOH HOH . 
W 3 HOH A 19 336 98 HOH HOH . 
W 3 HOH A 20 337 106 HOH HOH . 
W 3 HOH A 21 338 107 HOH HOH . 
W 3 HOH A 22 339 110 HOH HOH . 
W 3 HOH A 23 340 119 HOH HOH . 
W 3 HOH A 24 341 132 HOH HOH . 
W 3 HOH A 25 342 158 HOH HOH . 
W 3 HOH A 26 343 174 HOH HOH . 
X 3 HOH B 1 319 6 HOH HOH . 
X 3 HOH B 2 320 8 HOH HOH . 
X 3 HOH B 3 321 21 HOH HOH . 
X 3 HOH B 4 322 23 HOH HOH . 
X 3 HOH B 5 323 29 HOH HOH . 
X 3 HOH B 6 324 30 HOH HOH . 
X 3 HOH B 7 325 33 HOH HOH . 
X 3 HOH B 8 326 34 HOH HOH . 
X 3 HOH B 9 327 35 HOH HOH . 
X 3 HOH B 10 328 36 HOH HOH . 
X 3 HOH B 11 329 38 HOH HOH . 
X 3 HOH B 12 330 39 HOH HOH . 
X 3 HOH B 13 331 47 HOH HOH . 
X 3 HOH B 14 332 61 HOH HOH . 
X 3 HOH B 15 333 66 HOH HOH . 
X 3 HOH B 16 334 70 HOH HOH . 
X 3 HOH B 17 335 72 HOH HOH . 
X 3 HOH B 18 336 75 HOH HOH . 
X 3 HOH B 19 337 80 HOH HOH . 
X 3 HOH B 20 338 81 HOH HOH . 
X 3 HOH B 21 339 82 HOH HOH . 
X 3 HOH B 22 340 88 HOH HOH . 
X 3 HOH B 23 341 97 HOH HOH . 
X 3 HOH B 24 342 101 HOH HOH . 
X 3 HOH B 25 343 102 HOH HOH . 
X 3 HOH B 26 344 104 HOH HOH . 
X 3 HOH B 27 345 105 HOH HOH . 
X 3 HOH B 28 346 115 HOH HOH . 
X 3 HOH B 29 347 117 HOH HOH . 
X 3 HOH B 30 348 120 HOH HOH . 
X 3 HOH B 31 349 124 HOH HOH . 
X 3 HOH B 32 350 129 HOH HOH . 
X 3 HOH B 33 351 141 HOH HOH . 
X 3 HOH B 34 352 145 HOH HOH . 
X 3 HOH B 35 353 146 HOH HOH . 
X 3 HOH B 36 354 156 HOH HOH . 
X 3 HOH B 37 355 157 HOH HOH . 
X 3 HOH B 38 356 159 HOH HOH . 
X 3 HOH B 39 357 162 HOH HOH . 
X 3 HOH B 40 358 164 HOH HOH . 
X 3 HOH B 41 359 167 HOH HOH . 
X 3 HOH B 42 360 168 HOH HOH . 
X 3 HOH B 43 361 198 HOH HOH . 
Y 3 HOH C 1 308 4 HOH HOH . 
Y 3 HOH C 2 309 15 HOH HOH . 
Y 3 HOH C 3 310 20 HOH HOH . 
Y 3 HOH C 4 311 22 HOH HOH . 
Y 3 HOH C 5 312 37 HOH HOH . 
Y 3 HOH C 6 313 42 HOH HOH . 
Y 3 HOH C 7 314 45 HOH HOH . 
Y 3 HOH C 8 315 50 HOH HOH . 
Y 3 HOH C 9 316 52 HOH HOH . 
Y 3 HOH C 10 317 55 HOH HOH . 
Y 3 HOH C 11 318 59 HOH HOH . 
Y 3 HOH C 12 319 71 HOH HOH . 
Y 3 HOH C 13 320 74 HOH HOH . 
Y 3 HOH C 14 321 76 HOH HOH . 
Y 3 HOH C 15 322 87 HOH HOH . 
Y 3 HOH C 16 323 93 HOH HOH . 
Y 3 HOH C 17 324 99 HOH HOH . 
Y 3 HOH C 18 325 118 HOH HOH . 
Y 3 HOH C 19 326 126 HOH HOH . 
Y 3 HOH C 20 327 128 HOH HOH . 
Y 3 HOH C 21 328 130 HOH HOH . 
Y 3 HOH C 22 329 134 HOH HOH . 
Y 3 HOH C 23 330 143 HOH HOH . 
Y 3 HOH C 24 331 147 HOH HOH . 
Y 3 HOH C 25 332 152 HOH HOH . 
Y 3 HOH C 26 333 165 HOH HOH . 
Y 3 HOH C 27 334 166 HOH HOH . 
Y 3 HOH C 28 335 195 HOH HOH . 
Y 3 HOH C 29 336 199 HOH HOH . 
Z 3 HOH D 1 316 7 HOH HOH . 
Z 3 HOH D 2 317 24 HOH HOH . 
Z 3 HOH D 3 318 43 HOH HOH . 
Z 3 HOH D 4 319 53 HOH HOH . 
Z 3 HOH D 5 320 58 HOH HOH . 
Z 3 HOH D 6 321 65 HOH HOH . 
Z 3 HOH D 7 322 69 HOH HOH . 
Z 3 HOH D 8 323 95 HOH HOH . 
Z 3 HOH D 9 324 100 HOH HOH . 
Z 3 HOH D 10 325 103 HOH HOH . 
Z 3 HOH D 11 326 111 HOH HOH . 
Z 3 HOH D 12 327 113 HOH HOH . 
Z 3 HOH D 13 328 114 HOH HOH . 
Z 3 HOH D 14 329 125 HOH HOH . 
Z 3 HOH D 15 330 131 HOH HOH . 
Z 3 HOH D 16 331 133 HOH HOH . 
Z 3 HOH D 17 332 140 HOH HOH . 
Z 3 HOH D 18 333 142 HOH HOH . 
Z 3 HOH D 19 334 149 HOH HOH . 
Z 3 HOH D 20 335 161 HOH HOH . 
Z 3 HOH D 21 336 163 HOH HOH . 
Z 3 HOH D 22 337 171 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S SO4 . . . V 2 124.703 11.234 -5.147 1 114.29 ? S SO4 315 D 1 
HETATM 2 O O1 SO4 . . . V 2 124.921 11.96 -3.905 1 115.5 ? O1 SO4 315 D 1 
HETATM 3 O O2 SO4 . . . V 2 124.619 12.137 -6.287 1 115.14 ? O2 SO4 315 D 1 
HETATM 4 O O3 SO4 . . . V 2 123.454 10.494 -5.011 1 115.98 ? O3 SO4 315 D 1 
HETATM 5 O O4 SO4 . . . V 2 125.808 10.311 -5.364 1 115.37 ? O4 SO4 315 D 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           299 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           5 
#