data_1YT7 # _model_server_result.job_id L629W7TP9V3GhoTFwgrHxQ _model_server_result.datetime_utc '2024-11-14 18:58:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1yt7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 1YT7 # _exptl.entry_id 1YT7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 583.557 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1R)-2,2-DIMETHYL-1-({5-[4-(TRIFLUOROMETHYL)PHENYL]-1,3,4-OXADIAZOL-2-YL}METHYL)PROPYL (1S)-1-{OXO[(2-OXO-1,3-OXAZOLIDIN-3-YL)AMINO]ACETYL}PENTYLCARBAMATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1YT7 _cell.length_a 65.645 _cell.length_b 65.645 _cell.length_c 34.467 _cell.Z_PDB 3 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YT7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 63 A CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 A SG CYS 56 A CYS 56 1_555 A SG CYS 96 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 155 A CYS 155 1_555 A SG CYS 204 A CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? covale ? covale1 A SG CYS 25 A CYS 25 1_555 D C31 3FC . A 3FC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? # _chem_comp.formula 'C26 H32 F3 N5 O7' _chem_comp.formula_weight 583.557 _chem_comp.id 3FC _chem_comp.mon_nstd_flag . _chem_comp.name '(1R)-2,2-DIMETHYL-1-({5-[4-(TRIFLUOROMETHYL)PHENYL]-1,3,4-OXADIAZOL-2-YL}METHYL)PROPYL (1S)-1-{OXO[(2-OXO-1,3-OXAZOLIDIN-3-YL)AMINO]ACETYL}PENTYLCARBAMATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 3FC sing 1 n n C1 H11 3FC sing 2 n n C1 H12 3FC sing 3 n n C1 H13 3FC sing 4 n n C2 C3 3FC sing 5 n n C2 H21A 3FC sing 6 n n C2 H22A 3FC sing 7 n n C3 C4 3FC sing 8 n n C3 H31 3FC sing 9 n n C3 H32 3FC sing 10 n n C4 C5 3FC sing 11 n n C4 H41 3FC sing 12 n n C4 H42 3FC sing 13 n n C5 N6 3FC sing 14 n n C5 C31 3FC sing 15 n n C5 H5 3FC sing 16 n n N6 C7 3FC sing 17 n n N6 HN6 3FC sing 18 n n C7 O8 3FC doub 19 n n C7 O9 3FC sing 20 n n O9 C10 3FC sing 21 n n C10 C11 3FC sing 22 n n C10 C27 3FC sing 23 n n C10 H10 3FC sing 24 n n C11 C12 3FC sing 25 n n C11 H111 3FC sing 26 n n C11 H112 3FC sing 27 n n C12 N13 3FC doub 28 n y C12 O16 3FC sing 29 n y N13 N14 3FC sing 30 n y N14 C15 3FC doub 31 n y C15 O16 3FC sing 32 n y C15 C17 3FC sing 33 n y C17 C18 3FC doub 34 n y C17 C22 3FC sing 35 n y C18 C19 3FC sing 36 n y C18 H18 3FC sing 37 n n C19 C20 3FC doub 38 n y C19 H19 3FC sing 39 n n C20 C21 3FC sing 40 n y C20 C23 3FC sing 41 n n C21 C22 3FC doub 42 n y C21 H21 3FC sing 43 n n C22 H22 3FC sing 44 n n C23 F24 3FC sing 45 n n C23 F25 3FC sing 46 n n C23 F26 3FC sing 47 n n C27 C28 3FC sing 48 n n C27 C29 3FC sing 49 n n C27 C30 3FC sing 50 n n C28 H281 3FC sing 51 n n C28 H282 3FC sing 52 n n C28 H283 3FC sing 53 n n C29 H291 3FC sing 54 n n C29 H292 3FC sing 55 n n C29 H293 3FC sing 56 n n C30 H301 3FC sing 57 n n C30 H302 3FC sing 58 n n C30 H303 3FC sing 59 n n C33 O34 3FC doub 60 n n C33 N35 3FC sing 61 n n C33 C31 3FC sing 62 n n N35 N36 3FC sing 63 n n N35 H35 3FC sing 64 n n N36 C37 3FC sing 65 n n N36 C40 3FC sing 66 n n C37 C38 3FC sing 67 n n C37 H371 3FC sing 68 n n C37 H372 3FC sing 69 n n C38 O39 3FC sing 70 n n C38 H381 3FC sing 71 n n C38 H382 3FC sing 72 n n O39 C40 3FC sing 73 n n C40 O41 3FC doub 74 n n C31 O32 3FC doub 75 n n # _atom_sites.entry_id 1YT7 _atom_sites.fract_transf_matrix[1][1] 0.015233 _atom_sites.fract_transf_matrix[1][2] 0.008795 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01759 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.029013 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 216 1 SO4 SO4 . C 2 SO4 A 1 217 2 SO4 SO4 . D 3 3FC A 1 301 1 3FC LIG . E 4 HOH A 1 302 1 HOH HOH . E 4 HOH A 2 303 2 HOH HOH . E 4 HOH A 3 304 3 HOH HOH . E 4 HOH A 4 305 4 HOH HOH . E 4 HOH A 5 306 5 HOH HOH . E 4 HOH A 6 307 6 HOH HOH . E 4 HOH A 7 308 7 HOH HOH . E 4 HOH A 8 309 8 HOH HOH . E 4 HOH A 9 310 9 HOH HOH . E 4 HOH A 10 311 10 HOH HOH . E 4 HOH A 11 312 11 HOH HOH . E 4 HOH A 12 313 12 HOH HOH . E 4 HOH A 13 314 13 HOH HOH . E 4 HOH A 14 315 14 HOH HOH . E 4 HOH A 15 316 15 HOH HOH . E 4 HOH A 16 317 16 HOH HOH . E 4 HOH A 17 318 17 HOH HOH . E 4 HOH A 18 319 18 HOH HOH . E 4 HOH A 19 320 19 HOH HOH . E 4 HOH A 20 321 20 HOH HOH . E 4 HOH A 21 322 21 HOH HOH . E 4 HOH A 22 323 22 HOH HOH . E 4 HOH A 23 324 23 HOH HOH . E 4 HOH A 24 325 24 HOH HOH . E 4 HOH A 25 326 25 HOH HOH . E 4 HOH A 26 327 26 HOH HOH . E 4 HOH A 27 328 27 HOH HOH . E 4 HOH A 28 329 28 HOH HOH . E 4 HOH A 29 330 29 HOH HOH . E 4 HOH A 30 331 30 HOH HOH . E 4 HOH A 31 332 31 HOH HOH . E 4 HOH A 32 333 32 HOH HOH . E 4 HOH A 33 334 33 HOH HOH . E 4 HOH A 34 335 34 HOH HOH . E 4 HOH A 35 336 35 HOH HOH . E 4 HOH A 36 337 36 HOH HOH . E 4 HOH A 37 338 37 HOH HOH . E 4 HOH A 38 339 38 HOH HOH . E 4 HOH A 39 340 39 HOH HOH . E 4 HOH A 40 341 40 HOH HOH . E 4 HOH A 41 342 41 HOH HOH . E 4 HOH A 42 343 42 HOH HOH . E 4 HOH A 43 344 43 HOH HOH . E 4 HOH A 44 345 44 HOH HOH . E 4 HOH A 45 346 45 HOH HOH . E 4 HOH A 46 347 46 HOH HOH . E 4 HOH A 47 348 47 HOH HOH . E 4 HOH A 48 349 48 HOH HOH . E 4 HOH A 49 350 49 HOH HOH . E 4 HOH A 50 351 50 HOH HOH . E 4 HOH A 51 352 51 HOH HOH . E 4 HOH A 52 353 52 HOH HOH . E 4 HOH A 53 354 53 HOH HOH . E 4 HOH A 54 355 54 HOH HOH . E 4 HOH A 55 356 55 HOH HOH . E 4 HOH A 56 357 56 HOH HOH . E 4 HOH A 57 358 57 HOH HOH . E 4 HOH A 58 359 58 HOH HOH . E 4 HOH A 59 360 59 HOH HOH . E 4 HOH A 60 361 60 HOH HOH . E 4 HOH A 61 362 61 HOH HOH . E 4 HOH A 62 363 62 HOH HOH . E 4 HOH A 63 364 63 HOH HOH . E 4 HOH A 64 365 64 HOH HOH . E 4 HOH A 65 366 65 HOH HOH . E 4 HOH A 66 367 66 HOH HOH . E 4 HOH A 67 368 67 HOH HOH . E 4 HOH A 68 369 68 HOH HOH . E 4 HOH A 69 370 69 HOH HOH . E 4 HOH A 70 371 70 HOH HOH . E 4 HOH A 71 372 71 HOH HOH . E 4 HOH A 72 373 72 HOH HOH . E 4 HOH A 73 374 73 HOH HOH . E 4 HOH A 74 375 74 HOH HOH . E 4 HOH A 75 376 75 HOH HOH . E 4 HOH A 76 377 76 HOH HOH . E 4 HOH A 77 378 77 HOH HOH . E 4 HOH A 78 379 78 HOH HOH . E 4 HOH A 79 380 79 HOH HOH . E 4 HOH A 80 381 80 HOH HOH . E 4 HOH A 81 382 81 HOH HOH . E 4 HOH A 82 383 82 HOH HOH . E 4 HOH A 83 384 83 HOH HOH . E 4 HOH A 84 385 84 HOH HOH . E 4 HOH A 85 386 85 HOH HOH . E 4 HOH A 86 387 86 HOH HOH . E 4 HOH A 87 388 87 HOH HOH . E 4 HOH A 88 389 88 HOH HOH . E 4 HOH A 89 390 89 HOH HOH . E 4 HOH A 90 391 90 HOH HOH . E 4 HOH A 91 392 91 HOH HOH . E 4 HOH A 92 393 92 HOH HOH . E 4 HOH A 93 394 93 HOH HOH . E 4 HOH A 94 395 94 HOH HOH . E 4 HOH A 95 396 95 HOH HOH . E 4 HOH A 96 397 96 HOH HOH . E 4 HOH A 97 398 97 HOH HOH . E 4 HOH A 98 399 98 HOH HOH . E 4 HOH A 99 400 99 HOH HOH . E 4 HOH A 100 401 100 HOH HOH . E 4 HOH A 101 402 101 HOH HOH . E 4 HOH A 102 403 102 HOH HOH . E 4 HOH A 103 404 103 HOH HOH . E 4 HOH A 104 405 104 HOH HOH . E 4 HOH A 105 406 105 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 3FC . . . D 3 19.33 52.507 199.517 1 19.58 ? C1 3FC 301 A 1 HETATM 2 C C2 3FC . . . D 3 18.539 53.824 199.529 1 18.02 ? C2 3FC 301 A 1 HETATM 3 C C3 3FC . . . D 3 17.443 53.764 200.593 1 14.48 ? C3 3FC 301 A 1 HETATM 4 C C4 3FC . . . D 3 17.269 55.164 201.214 1 17.46 ? C4 3FC 301 A 1 HETATM 5 C C5 3FC . . . D 3 16.393 55.09 202.48 1 16.36 ? C5 3FC 301 A 1 HETATM 6 N N6 3FC . . . D 3 16.473 53.771 203.011 1 13.57 ? N6 3FC 301 A 1 HETATM 7 C C7 3FC . . . D 3 17.331 53.468 204.022 1 14.38 ? C7 3FC 301 A 1 HETATM 8 O O8 3FC . . . D 3 18.168 54.293 204.409 1 11.72 ? O8 3FC 301 A 1 HETATM 9 O O9 3FC . . . D 3 17.246 52.273 204.587 1 13.79 ? O9 3FC 301 A 1 HETATM 10 C C10 3FC . . . D 3 17.978 52.141 205.794 1 14.44 ? C10 3FC 301 A 1 HETATM 11 C C11 3FC . . . D 3 18.808 50.859 205.68 1 15.36 ? C11 3FC 301 A 1 HETATM 12 C C12 3FC . . . D 3 19.941 51.082 204.719 1 16.4 ? C12 3FC 301 A 1 HETATM 13 N N13 3FC . . . D 3 19.853 50.859 203.37 1 17.51 ? N13 3FC 301 A 1 HETATM 14 N N14 3FC . . . D 3 20.963 51.14 202.865 1 16.41 ? N14 3FC 301 A 1 HETATM 15 C C15 3FC . . . D 3 21.793 51.512 203.87 1 15.86 ? C15 3FC 301 A 1 HETATM 16 O O16 3FC . . . D 3 21.198 51.547 205.137 1 17.76 ? O16 3FC 301 A 1 HETATM 17 C C17 3FC . . . D 3 23.175 51.82 203.689 1 15.58 ? C17 3FC 301 A 1 HETATM 18 C C18 3FC . . . D 3 23.963 52.102 204.821 1 13.32 ? C18 3FC 301 A 1 HETATM 19 C C19 3FC . . . D 3 25.309 52.331 204.687 1 12.11 ? C19 3FC 301 A 1 HETATM 20 C C20 3FC . . . D 3 25.902 52.299 203.439 1 13.57 ? C20 3FC 301 A 1 HETATM 21 C C21 3FC . . . D 3 25.129 52.036 202.288 1 14.89 ? C21 3FC 301 A 1 HETATM 22 C C22 3FC . . . D 3 23.759 51.8 202.412 1 15.19 ? C22 3FC 301 A 1 HETATM 23 C C23 3FC . . . D 3 27.372 52.549 203.319 1 13.71 ? C23 3FC 301 A 1 HETATM 24 F F24 3FC . . . D 3 27.693 52.826 202.022 1 16.33 ? F24 3FC 301 A 1 HETATM 25 F F25 3FC . . . D 3 28.043 51.444 203.723 1 16.43 ? F25 3FC 301 A 1 HETATM 26 F F26 3FC . . . D 3 27.718 53.595 204.11 1 13.06 ? F26 3FC 301 A 1 HETATM 27 C C27 3FC . . . D 3 16.985 51.976 206.983 1 14.22 ? C27 3FC 301 A 1 HETATM 28 C C28 3FC . . . D 3 16.037 50.792 206.684 1 15.97 ? C28 3FC 301 A 1 HETATM 29 C C29 3FC . . . D 3 16.167 53.257 207.176 1 13.62 ? C29 3FC 301 A 1 HETATM 30 C C30 3FC . . . D 3 17.752 51.684 208.269 1 13.75 ? C30 3FC 301 A 1 HETATM 31 C C33 3FC . . . D 3 14.65 56.543 201.144 1 17.15 ? C33 3FC 301 A 1 HETATM 32 O O34 3FC . . . D 3 15.212 57.621 201.303 1 17.86 ? O34 3FC 301 A 1 HETATM 33 N N35 3FC . . . D 3 13.739 56.381 200.135 1 18.88 ? N35 3FC 301 A 1 HETATM 34 N N36 3FC . . . D 3 13.766 57.092 199.092 1 18.36 ? N36 3FC 301 A 1 HETATM 35 C C37 3FC . . . D 3 14.841 57.089 198.18 1 16.79 ? C37 3FC 301 A 1 HETATM 36 C C38 3FC . . . D 3 14.277 58.065 197.074 1 17.91 ? C38 3FC 301 A 1 HETATM 37 O O39 3FC . . . D 3 12.954 58.462 197.585 1 18.75 ? O39 3FC 301 A 1 HETATM 38 C C40 3FC . . . D 3 12.79 57.832 198.742 1 19.3 ? C40 3FC 301 A 1 HETATM 39 O O41 3FC . . . D 3 11.778 57.951 199.426 1 22.31 ? O41 3FC 301 A 1 HETATM 40 C C31 3FC . . . D 3 14.977 55.335 202.059 1 16.86 ? C31 3FC 301 A 1 HETATM 41 O O32 3FC . . . D 3 14.055 54.355 202.224 1 16.43 ? O32 3FC 301 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 249 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 41 #