data_1YTC # _model_server_result.job_id tE6ystHm77NkU45cg-vJ-Q _model_server_result.datetime_utc '2024-10-14 07:24:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ytc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":104}' # _entry.id 1YTC # _exptl.entry_id 1YTC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 618.503 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1YTC _cell.length_a 36.66 _cell.length_b 36.66 _cell.length_c 138.92 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YTC _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 23 A CYS 14 1_555 C CAB HEC . A HEC 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.774 ? covale ? covale2 A SG CYS 26 A CYS 17 1_555 C CAC HEC . A HEC 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.823 ? covale ? covale3 A C PRO 80 A PRO 71 1_555 A N M3L 81 A M3L 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale4 A C M3L 81 A M3L 72 1_555 A N LYS 82 A LYS 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? metalc ? metalc1 A NE2 HIS 27 A HIS 18 1_555 C FE HEC . A HEC 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc2 A SD MET 89 A MET 80 1_555 C FE HEC . A HEC 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1YTC _atom_sites.fract_transf_matrix[1][1] 0.027278 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.027278 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007198 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 105 105 SO4 SO4 . C 3 HEC A 1 104 104 HEC HEM . D 4 HOH A 1 106 106 HOH HOH . D 4 HOH A 2 107 107 HOH HOH . D 4 HOH A 3 108 108 HOH HOH . D 4 HOH A 4 109 109 HOH HOH . D 4 HOH A 5 110 110 HOH HOH . D 4 HOH A 6 111 111 HOH HOH . D 4 HOH A 7 112 112 HOH HOH . D 4 HOH A 8 113 113 HOH HOH . D 4 HOH A 9 114 114 HOH HOH . D 4 HOH A 10 115 115 HOH HOH . D 4 HOH A 11 116 116 HOH HOH . D 4 HOH A 12 117 117 HOH HOH . D 4 HOH A 13 118 118 HOH HOH . D 4 HOH A 14 119 119 HOH HOH . D 4 HOH A 15 120 120 HOH HOH . D 4 HOH A 16 121 121 HOH HOH . D 4 HOH A 17 122 122 HOH HOH . D 4 HOH A 18 123 123 HOH HOH . D 4 HOH A 19 124 124 HOH HOH . D 4 HOH A 20 125 125 HOH HOH . D 4 HOH A 21 126 126 HOH HOH . D 4 HOH A 22 127 127 HOH HOH . D 4 HOH A 23 128 128 HOH HOH . D 4 HOH A 24 129 129 HOH HOH . D 4 HOH A 25 130 130 HOH HOH . D 4 HOH A 26 131 131 HOH HOH . D 4 HOH A 27 132 132 HOH HOH . D 4 HOH A 28 133 133 HOH HOH . D 4 HOH A 29 134 134 HOH HOH . D 4 HOH A 30 135 135 HOH HOH . D 4 HOH A 31 136 136 HOH HOH . D 4 HOH A 32 137 137 HOH HOH . D 4 HOH A 33 138 138 HOH HOH . D 4 HOH A 34 139 139 HOH HOH . D 4 HOH A 35 140 140 HOH HOH . D 4 HOH A 36 141 141 HOH HOH . D 4 HOH A 37 142 142 HOH HOH . D 4 HOH A 38 143 143 HOH HOH . D 4 HOH A 39 144 144 HOH HOH . D 4 HOH A 40 145 145 HOH HOH . D 4 HOH A 41 146 146 HOH HOH . D 4 HOH A 42 147 147 HOH HOH . D 4 HOH A 43 148 148 HOH HOH . D 4 HOH A 44 149 149 HOH HOH . D 4 HOH A 45 150 150 HOH HOH . D 4 HOH A 46 151 151 HOH HOH . D 4 HOH A 47 152 152 HOH HOH . D 4 HOH A 48 153 153 HOH HOH . D 4 HOH A 49 154 154 HOH HOH . D 4 HOH A 50 155 155 HOH HOH . D 4 HOH A 51 156 156 HOH HOH . D 4 HOH A 52 157 157 HOH HOH . D 4 HOH A 53 158 158 HOH HOH . D 4 HOH A 54 159 159 HOH HOH . D 4 HOH A 55 160 160 HOH HOH . D 4 HOH A 56 161 161 HOH HOH . D 4 HOH A 57 162 162 HOH HOH . D 4 HOH A 58 163 163 HOH HOH . D 4 HOH A 59 164 164 HOH HOH . D 4 HOH A 60 165 165 HOH HOH . D 4 HOH A 61 166 166 HOH HOH . D 4 HOH A 62 167 167 HOH HOH . D 4 HOH A 63 168 168 HOH HOH . D 4 HOH A 64 169 169 HOH HOH . D 4 HOH A 65 170 170 HOH HOH . D 4 HOH A 66 171 171 HOH HOH . D 4 HOH A 67 172 172 HOH HOH . D 4 HOH A 68 173 173 HOH HOH . D 4 HOH A 69 174 174 HOH HOH . D 4 HOH A 70 175 175 HOH HOH . D 4 HOH A 71 176 176 HOH HOH . D 4 HOH A 72 177 177 HOH HOH . D 4 HOH A 73 178 178 HOH HOH . D 4 HOH A 74 179 179 HOH HOH . D 4 HOH A 75 180 180 HOH HOH . D 4 HOH A 76 181 181 HOH HOH . D 4 HOH A 77 182 182 HOH HOH . D 4 HOH A 78 183 183 HOH HOH . D 4 HOH A 79 184 184 HOH HOH . D 4 HOH A 80 185 185 HOH HOH . D 4 HOH A 81 186 186 HOH HOH . D 4 HOH A 82 187 187 HOH HOH . D 4 HOH A 83 188 188 HOH HOH . D 4 HOH A 84 189 189 HOH HOH . D 4 HOH A 85 190 190 HOH HOH . D 4 HOH A 86 191 191 HOH HOH . D 4 HOH A 87 192 192 HOH HOH . D 4 HOH A 88 193 193 HOH HOH . D 4 HOH A 89 194 194 HOH HOH . D 4 HOH A 90 195 195 HOH HOH . D 4 HOH A 91 196 196 HOH HOH . D 4 HOH A 92 197 197 HOH HOH . D 4 HOH A 93 198 198 HOH HOH . D 4 HOH A 94 199 199 HOH HOH . D 4 HOH A 95 200 200 HOH HOH . D 4 HOH A 96 201 201 HOH HOH . D 4 HOH A 97 202 202 HOH HOH . D 4 HOH A 98 203 203 HOH HOH . D 4 HOH A 99 204 204 HOH HOH . D 4 HOH A 100 205 205 HOH HOH . D 4 HOH A 101 206 206 HOH HOH . D 4 HOH A 102 207 207 HOH HOH . D 4 HOH A 103 208 208 HOH HOH . D 4 HOH A 104 209 209 HOH HOH . D 4 HOH A 105 210 210 HOH HOH . D 4 HOH A 106 211 211 HOH HOH . D 4 HOH A 107 212 212 HOH HOH . D 4 HOH A 108 213 213 HOH HOH . D 4 HOH A 109 214 214 HOH HOH . D 4 HOH A 110 215 215 HOH HOH . D 4 HOH A 111 216 216 HOH HOH . D 4 HOH A 112 217 217 HOH HOH . D 4 HOH A 113 218 218 HOH HOH . D 4 HOH A 114 219 219 HOH HOH . D 4 HOH A 115 220 220 HOH HOH . D 4 HOH A 116 221 221 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . C 3 2.39 21.132 13.419 1 12.41 ? FE HEC 104 A 1 HETATM 2 C CHA HEC . . . C 3 4.664 18.856 14.587 1 9.62 ? CHA HEC 104 A 1 HETATM 3 C CHB HEC . . . C 3 3.588 20.774 10.289 1 10.52 ? CHB HEC 104 A 1 HETATM 4 C CHC HEC . . . C 3 -0.205 22.994 12.206 1 9.51 ? CHC HEC 104 A 1 HETATM 5 C CHD HEC . . . C 3 1.525 21.942 16.558 1 9.29 ? CHD HEC 104 A 1 HETATM 6 N NA HEC . . . C 3 3.821 20.043 12.609 1 9.31 ? NA HEC 104 A 1 HETATM 7 C C1A HEC . . . C 3 4.666 19.13 13.204 1 9.57 ? C1A HEC 104 A 1 HETATM 8 C C2A HEC . . . C 3 5.53 18.528 12.253 1 10.23 ? C2A HEC 104 A 1 HETATM 9 C C3A HEC . . . C 3 5.251 19.04 11.037 1 10.01 ? C3A HEC 104 A 1 HETATM 10 C C4A HEC . . . C 3 4.188 19.987 11.218 1 9.44 ? C4A HEC 104 A 1 HETATM 11 C CMA HEC . . . C 3 5.865 18.75 9.647 1 10.97 ? CMA HEC 104 A 1 HETATM 12 C CAA HEC . . . C 3 6.614 17.452 12.614 1 8.31 ? CAA HEC 104 A 1 HETATM 13 C CBA HEC . . . C 3 7.961 18.238 12.853 1 11.67 ? CBA HEC 104 A 1 HETATM 14 C CGA HEC . . . C 3 9.214 17.381 12.998 1 14.72 ? CGA HEC 104 A 1 HETATM 15 O O1A HEC . . . C 3 10.26 18.035 13.339 1 16.25 ? O1A HEC 104 A 1 HETATM 16 O O2A HEC . . . C 3 9.121 16.174 12.76 1 13.54 ? O2A HEC 104 A 1 HETATM 17 N NB HEC . . . C 3 1.788 21.775 11.597 1 10.97 ? NB HEC 104 A 1 HETATM 18 C C1B HEC . . . C 3 2.482 21.557 10.421 1 11.28 ? C1B HEC 104 A 1 HETATM 19 C C2B HEC . . . C 3 1.82 22.268 9.337 1 9.96 ? C2B HEC 104 A 1 HETATM 20 C C3B HEC . . . C 3 0.773 22.884 9.867 1 9.65 ? C3B HEC 104 A 1 HETATM 21 C C4B HEC . . . C 3 0.72 22.582 11.311 1 8.93 ? C4B HEC 104 A 1 HETATM 22 C CMB HEC . . . C 3 2.338 22.264 7.872 1 11.74 ? CMB HEC 104 A 1 HETATM 23 C CAB HEC . . . C 3 -0.304 23.752 9.149 1 9.91 ? CAB HEC 104 A 1 HETATM 24 C CBB HEC . . . C 3 -1.191 22.889 8.219 1 12.15 ? CBB HEC 104 A 1 HETATM 25 N NC HEC . . . C 3 0.937 22.205 14.246 1 10.09 ? NC HEC 104 A 1 HETATM 26 C C1C HEC . . . C 3 -0.019 22.971 13.574 1 11.71 ? C1C HEC 104 A 1 HETATM 27 C C2C HEC . . . C 3 -0.812 23.729 14.516 1 11.39 ? C2C HEC 104 A 1 HETATM 28 C C3C HEC . . . C 3 -0.346 23.434 15.753 1 11.42 ? C3C HEC 104 A 1 HETATM 29 C C4C HEC . . . C 3 0.764 22.519 15.591 1 11.33 ? C4C HEC 104 A 1 HETATM 30 C CMC HEC . . . C 3 -1.947 24.695 14.125 1 11.44 ? CMC HEC 104 A 1 HETATM 31 C CAC HEC . . . C 3 -0.742 24.066 17.103 1 13.26 ? CAC HEC 104 A 1 HETATM 32 C CBC HEC . . . C 3 -2.248 24.122 17.45 1 11.78 ? CBC HEC 104 A 1 HETATM 33 N ND HEC . . . C 3 2.987 20.511 15.263 1 10.86 ? ND HEC 104 A 1 HETATM 34 C C1D HEC . . . C 3 2.462 20.966 16.43 1 9.98 ? C1D HEC 104 A 1 HETATM 35 C C2D HEC . . . C 3 3.097 20.225 17.552 1 11.06 ? C2D HEC 104 A 1 HETATM 36 C C3D HEC . . . C 3 3.977 19.404 16.972 1 10.46 ? C3D HEC 104 A 1 HETATM 37 C C4D HEC . . . C 3 3.897 19.547 15.535 1 10.96 ? C4D HEC 104 A 1 HETATM 38 C CMD HEC . . . C 3 2.752 20.483 19.034 1 12 ? CMD HEC 104 A 1 HETATM 39 C CAD HEC . . . C 3 4.892 18.356 17.676 1 9.4 ? CAD HEC 104 A 1 HETATM 40 C CBD HEC . . . C 3 4.058 17.033 17.774 1 11.69 ? CBD HEC 104 A 1 HETATM 41 C CGD HEC . . . C 3 4.633 15.859 18.538 1 10.26 ? CGD HEC 104 A 1 HETATM 42 O O1D HEC . . . C 3 5.705 15.977 19.157 1 14.34 ? O1D HEC 104 A 1 HETATM 43 O O2D HEC . . . C 3 3.946 14.804 18.493 1 11.81 ? O2D HEC 104 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #