data_1YTK
#
_model_server_result.job_id            dSGVZ60bNMQqQFR6AZPnGw 
_model_server_result.datetime_utc      '2024-12-02 09:27:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1ytk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":402}' 
#
_entry.id    1YTK 
#
_exptl.entry_id    1YTK 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              122.143 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1YTK 
_cell.length_a            135.191 
_cell.length_b            135.191 
_cell.length_c            119.66 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 1YTK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        182 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 63 2 2' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4,5,6 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 135.191 0 0 
3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 67.5955 117.07884 0 
4 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/2 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 67.5955 117.07884 59.83 
5 'crystal symmetry operation' 11_655 -x+y+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 135.191 0 59.83 
6 'crystal symmetry operation' 12_555 x,x-y,-z+1/2 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 0 0 59.83 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   disulf 
_struct_conn.details                        ? 
_struct_conn.id                             disulf1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             39 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              33 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            A 
_struct_conn.ptnr2_label_atom_id            SG 
_struct_conn.ptnr2_label_comp_id            CYS 
_struct_conn.ptnr2_label_seq_id             106 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             CYS 
_struct_conn.ptnr2_auth_seq_id              100 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.035 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C4 H12 N O3 1' 
_chem_comp.formula_weight    122.143 
_chem_comp.id                TRS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'TRIS BUFFER' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C C1 TRS sing 371 n n 
C C2 TRS sing 372 n n 
C C3 TRS sing 373 n n 
C N TRS sing 374 n n 
C1 O1 TRS sing 375 n n 
C1 H11 TRS sing 376 n n 
C1 H12 TRS sing 377 n n 
C2 O2 TRS sing 378 n n 
C2 H21 TRS sing 379 n n 
C2 H22 TRS sing 380 n n 
C3 O3 TRS sing 381 n n 
C3 H31 TRS sing 382 n n 
C3 H32 TRS sing 383 n n 
N HN1 TRS sing 384 n n 
N HN2 TRS sing 385 n n 
N HN3 TRS sing 386 n n 
O1 HO1 TRS sing 387 n n 
O2 HO2 TRS sing 388 n n 
O3 HO3 TRS sing 389 n n 
#
_atom_sites.entry_id                     1YTK 
_atom_sites.fract_transf_matrix[1][1]    0.007397 
_atom_sites.fract_transf_matrix[1][2]    0.004271 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008541 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008357 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NCN A 1 401 401 NCN NCN . 
C 3 TRS A 1 402 402 TRS TRS . 
D 4 HOH A 1 501 501 HOH TIP . 
D 4 HOH A 2 502 502 HOH TIP . 
D 4 HOH A 3 503 503 HOH TIP . 
D 4 HOH A 4 504 504 HOH TIP . 
D 4 HOH A 5 505 505 HOH TIP . 
D 4 HOH A 6 506 506 HOH TIP . 
D 4 HOH A 7 507 507 HOH TIP . 
D 4 HOH A 8 508 508 HOH TIP . 
D 4 HOH A 9 509 509 HOH TIP . 
D 4 HOH A 10 510 510 HOH TIP . 
D 4 HOH A 11 511 511 HOH TIP . 
D 4 HOH A 12 512 512 HOH TIP . 
D 4 HOH A 13 513 513 HOH TIP . 
D 4 HOH A 14 514 514 HOH TIP . 
D 4 HOH A 15 515 515 HOH TIP . 
D 4 HOH A 16 516 516 HOH TIP . 
D 4 HOH A 17 517 517 HOH TIP . 
D 4 HOH A 18 518 518 HOH TIP . 
D 4 HOH A 19 519 519 HOH TIP . 
D 4 HOH A 20 520 520 HOH TIP . 
D 4 HOH A 21 521 521 HOH TIP . 
D 4 HOH A 22 522 522 HOH TIP . 
D 4 HOH A 23 523 523 HOH TIP . 
D 4 HOH A 24 524 524 HOH TIP . 
D 4 HOH A 25 525 525 HOH TIP . 
D 4 HOH A 26 526 526 HOH TIP . 
D 4 HOH A 27 527 527 HOH TIP . 
D 4 HOH A 28 528 528 HOH TIP . 
D 4 HOH A 29 529 529 HOH TIP . 
D 4 HOH A 30 530 530 HOH TIP . 
D 4 HOH A 31 531 531 HOH TIP . 
D 4 HOH A 32 532 532 HOH TIP . 
D 4 HOH A 33 533 533 HOH TIP . 
D 4 HOH A 34 534 534 HOH TIP . 
D 4 HOH A 35 535 535 HOH TIP . 
D 4 HOH A 36 536 536 HOH TIP . 
D 4 HOH A 37 537 537 HOH TIP . 
D 4 HOH A 38 538 538 HOH TIP . 
D 4 HOH A 39 539 539 HOH TIP . 
D 4 HOH A 40 540 540 HOH TIP . 
D 4 HOH A 41 541 541 HOH TIP . 
D 4 HOH A 42 542 542 HOH TIP . 
D 4 HOH A 43 543 543 HOH TIP . 
D 4 HOH A 44 544 544 HOH TIP . 
D 4 HOH A 45 545 545 HOH TIP . 
D 4 HOH A 46 546 546 HOH TIP . 
D 4 HOH A 47 547 547 HOH TIP . 
D 4 HOH A 48 548 548 HOH TIP . 
D 4 HOH A 49 549 549 HOH TIP . 
D 4 HOH A 50 550 550 HOH TIP . 
D 4 HOH A 51 551 551 HOH TIP . 
D 4 HOH A 52 552 552 HOH TIP . 
D 4 HOH A 53 553 553 HOH TIP . 
D 4 HOH A 54 554 554 HOH TIP . 
D 4 HOH A 55 555 555 HOH TIP . 
D 4 HOH A 56 556 556 HOH TIP . 
D 4 HOH A 57 557 557 HOH TIP . 
D 4 HOH A 58 558 558 HOH TIP . 
D 4 HOH A 59 559 559 HOH TIP . 
D 4 HOH A 60 560 560 HOH TIP . 
D 4 HOH A 61 561 561 HOH TIP . 
D 4 HOH A 62 562 562 HOH TIP . 
D 4 HOH A 63 563 563 HOH TIP . 
D 4 HOH A 64 564 564 HOH TIP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C TRS . . . C 3 88.979 49.348 21.036 1 72.46 ? C TRS 402 A 1 
HETATM 2 C C1 TRS . . . C 3 88.731 47.874 20.629 1 73.26 ? C1 TRS 402 A 1 
HETATM 3 C C2 TRS . . . C 3 87.667 49.965 21.524 1 72.9 ? C2 TRS 402 A 1 
HETATM 4 C C3 TRS . . . C 3 90.115 49.248 22.061 1 71.08 ? C3 TRS 402 A 1 
HETATM 5 N N TRS . . . C 3 89.399 50.252 19.957 1 73.64 ? N TRS 402 A 1 
HETATM 6 O O1 TRS . . . C 3 87.76 47.138 21.495 1 72.49 ? O1 TRS 402 A 1 
HETATM 7 O O2 TRS . . . C 3 86.636 50.018 20.444 1 71.7 ? O2 TRS 402 A 1 
HETATM 8 O O3 TRS . . . C 3 89.86 48.398 23.18 1 71.29 ? O3 TRS 402 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           252 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           8 
#