data_1YTZ
#
_model_server_result.job_id            cuGE7JjkzbyAGgib9tYUaQ 
_model_server_result.datetime_utc      '2025-02-05 17:05:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1ytz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":204}' 
#
_entry.id    1YTZ 
#
_exptl.entry_id    1YTZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              40.078 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CALCIUM ION' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1YTZ 
_cell.length_a            138.608 
_cell.length_b            138.608 
_cell.length_c            83.676 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1YTZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 author_and_software_defined_assembly 1 
PISA hexameric 6 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L,M 1 1 
A,B,C,D,E,F,G,H,I,J,K,L,M 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 8_666 -y+1,-x+1,-z+3/2 0 -1 0 -1 0 0 0 0 -1 138.608 138.608 125.514 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 F N N 
? 5 G N N 
? 5 H N N 
? 5 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 C OD2 ASP 30 C ASP 29 1_555 H CA CA . C CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? 
metalc ? metalc2 C OD1 ASP 32 C ASP 31 1_555 H CA CA . C CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.693 ? 
metalc ? metalc3 C OD2 ASP 32 C ASP 31 1_555 H CA CA . C CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.11 ? 
metalc ? metalc4 C O ASP 36 C ASP 35 1_555 H CA CA . C CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.508 ? 
metalc ? metalc5 C OE1 GLU 41 C GLU 40 1_555 H CA CA . C CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.635 ? 
metalc ? metalc6 C OE2 GLU 41 C GLU 40 1_555 H CA CA . C CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.94 ? 
metalc ? metalc7 C OD1 ASP 66 C ASP 65 1_555 I CA CA . C CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.031 ? 
metalc ? metalc8 C OD1 ASP 68 C ASP 67 1_555 I CA CA . C CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.668 ? 
metalc ? metalc9 C OD2 ASP 68 C ASP 67 1_555 I CA CA . C CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.143 ? 
metalc ? metalc10 C OG SER 70 C SER 69 1_555 I CA CA . C CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.611 ? 
metalc ? metalc11 C O THR 72 C THR 71 1_555 I CA CA . C CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.159 ? 
metalc ? metalc12 C OD2 ASP 74 C ASP 73 1_555 I CA CA . C CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.246 ? 
metalc ? metalc13 C OE1 GLU 77 C GLU 76 1_555 I CA CA . C CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.578 ? 
metalc ? metalc14 C OE2 GLU 77 C GLU 76 1_555 I CA CA . C CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.015 ? 
metalc ? metalc15 C OD1 ASP 106 C ASP 105 1_555 F CA CA . C CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.606 ? 
metalc ? metalc16 C OD1 ASN 108 C ASN 107 1_555 F CA CA . C CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.53 ? 
metalc ? metalc17 C OD1 ASP 110 C ASP 109 1_555 F CA CA . C CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.013 ? 
metalc ? metalc18 C OD2 ASP 110 C ASP 109 1_555 F CA CA . C CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? 
metalc ? metalc19 C O PHE 112 C PHE 111 1_555 F CA CA . C CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.92 ? 
metalc ? metalc20 C OE2 GLU 117 C GLU 116 1_555 F CA CA . C CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.95 ? 
metalc ? metalc21 C OE1 GLU 117 C GLU 116 1_555 F CA CA . C CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.888 ? 
metalc ? metalc22 C OD2 ASP 142 C ASP 141 1_555 G CA CA . C CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.662 ? 
metalc ? metalc23 C ND2 ASN 144 C ASN 143 1_555 G CA CA . C CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.122 ? 
metalc ? metalc24 C OD1 ASN 144 C ASN 143 1_555 G CA CA . C CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.533 ? 
metalc ? metalc25 C OD1 ASP 146 C ASP 145 1_555 G CA CA . C CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? 
metalc ? metalc26 C O ARG 148 C ARG 147 1_555 G CA CA . C CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.755 ? 
metalc ? metalc27 C OE1 GLU 153 C GLU 152 1_555 G CA CA . C CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.782 ? 
metalc ? metalc28 C OE2 GLU 153 C GLU 152 1_555 G CA CA . C CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.718 ? 
#
_chem_comp.formula           'Ca 2' 
_chem_comp.formula_weight    40.078 
_chem_comp.id                CA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CALCIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1YTZ 
_atom_sites.fract_transf_matrix[1][1]    0.007215 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007215 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011951 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 DR6 T 1 103 103 DR6 DR6 . 
E 4 DR6 I 1 183 102 DR6 DR6 . 
F 5 CA C 1 201 201 CA CA . 
G 5 CA C 1 202 202 CA CA . 
H 5 CA C 1 203 203 CA CA . 
I 5 CA C 1 204 204 CA CA . 
J 4 DR6 C 1 205 101 DR6 DR6 . 
K 6 HOH T 1 3 3 HOH HOH . 
K 6 HOH T 2 10 10 HOH HOH . 
K 6 HOH T 3 11 11 HOH HOH . 
K 6 HOH T 4 13 13 HOH HOH . 
K 6 HOH T 5 14 14 HOH HOH . 
K 6 HOH T 6 15 15 HOH HOH . 
K 6 HOH T 7 16 16 HOH HOH . 
K 6 HOH T 8 28 28 HOH HOH . 
K 6 HOH T 9 29 29 HOH HOH . 
K 6 HOH T 10 30 30 HOH HOH . 
K 6 HOH T 11 31 31 HOH HOH . 
K 6 HOH T 12 32 32 HOH HOH . 
K 6 HOH T 13 33 33 HOH HOH . 
L 6 HOH I 1 184 4 HOH HOH . 
L 6 HOH I 2 185 5 HOH HOH . 
L 6 HOH I 3 186 7 HOH HOH . 
L 6 HOH I 4 187 8 HOH HOH . 
L 6 HOH I 5 188 12 HOH HOH . 
L 6 HOH I 6 189 17 HOH HOH . 
L 6 HOH I 7 190 18 HOH HOH . 
L 6 HOH I 8 191 19 HOH HOH . 
L 6 HOH I 9 192 20 HOH HOH . 
L 6 HOH I 10 193 21 HOH HOH . 
L 6 HOH I 11 194 22 HOH HOH . 
L 6 HOH I 12 195 23 HOH HOH . 
L 6 HOH I 13 196 24 HOH HOH . 
L 6 HOH I 14 197 25 HOH HOH . 
L 6 HOH I 15 198 26 HOH HOH . 
L 6 HOH I 16 199 27 HOH HOH . 
M 6 HOH C 1 206 1 HOH HOH . 
M 6 HOH C 2 207 2 HOH HOH . 
M 6 HOH C 3 208 6 HOH HOH . 
M 6 HOH C 4 209 9 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CA 
_atom_site.label_atom_id         CA 
_atom_site.label_comp_id         CA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         I 
_atom_site.label_entity_id       5 
_atom_site.Cartn_x               110.61 
_atom_site.Cartn_y               66.748 
_atom_site.Cartn_z               43.74 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        80.46 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CA 
_atom_site.auth_comp_id          CA 
_atom_site.auth_seq_id           204 
_atom_site.auth_asym_id          C 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           326 
_model_server_stats.encode_time_ms          12 
_model_server_stats.element_count           1 
#