data_1YU3 # _model_server_result.job_id fO8b4RLHF88_9-7lwLuDxA _model_server_result.datetime_utc '2024-10-19 19:23:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1yu3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":382}' # _entry.id 1YU3 # _exptl.entry_id 1YU3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1YU3 _cell.length_a 92.308 _cell.length_b 92.308 _cell.length_c 102.29 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YU3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -y,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -46.154 79.941073 0 3 'crystal symmetry operation' 3_455 -x+y-1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -92.308 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O PHE 313 A PHE 313 1_555 B MG MG . A MG 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc2 A O PHE 313 A PHE 313 2_565 B MG MG . A MG 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc3 A O PHE 313 A PHE 313 3_455 B MG MG . A MG 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1YU3 _atom_sites.fract_transf_matrix[1][1] 0.010833 _atom_sites.fract_transf_matrix[1][2] 0.006255 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012509 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009776 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 382 1 MG MG . C 3 HOH A 1 383 1 HOH HOH . C 3 HOH A 2 384 2 HOH HOH . C 3 HOH A 3 385 3 HOH HOH . C 3 HOH A 4 386 4 HOH HOH . C 3 HOH A 5 387 5 HOH HOH . C 3 HOH A 6 388 6 HOH HOH . C 3 HOH A 7 389 7 HOH HOH . C 3 HOH A 8 390 8 HOH HOH . C 3 HOH A 9 391 9 HOH HOH . C 3 HOH A 10 392 10 HOH HOH . C 3 HOH A 11 393 11 HOH HOH . C 3 HOH A 12 394 12 HOH HOH . C 3 HOH A 13 395 13 HOH HOH . C 3 HOH A 14 396 14 HOH HOH . C 3 HOH A 15 397 15 HOH HOH . C 3 HOH A 16 398 16 HOH HOH . C 3 HOH A 17 399 17 HOH HOH . C 3 HOH A 18 400 18 HOH HOH . C 3 HOH A 19 401 19 HOH HOH . C 3 HOH A 20 402 20 HOH HOH . C 3 HOH A 21 403 21 HOH HOH . C 3 HOH A 22 404 22 HOH HOH . C 3 HOH A 23 405 23 HOH HOH . C 3 HOH A 24 406 24 HOH HOH . C 3 HOH A 25 407 25 HOH HOH . C 3 HOH A 26 408 26 HOH HOH . C 3 HOH A 27 409 27 HOH HOH . C 3 HOH A 28 410 28 HOH HOH . C 3 HOH A 29 411 29 HOH HOH . C 3 HOH A 30 412 30 HOH HOH . C 3 HOH A 31 413 31 HOH HOH . C 3 HOH A 32 414 32 HOH HOH . C 3 HOH A 33 415 33 HOH HOH . C 3 HOH A 34 416 34 HOH HOH . C 3 HOH A 35 417 35 HOH HOH . C 3 HOH A 36 418 36 HOH HOH . C 3 HOH A 37 419 37 HOH HOH . C 3 HOH A 38 420 38 HOH HOH . C 3 HOH A 39 421 39 HOH HOH . C 3 HOH A 40 422 40 HOH HOH . C 3 HOH A 41 423 41 HOH HOH . C 3 HOH A 42 424 42 HOH HOH . C 3 HOH A 43 425 43 HOH HOH . C 3 HOH A 44 426 44 HOH HOH . C 3 HOH A 45 427 45 HOH HOH . C 3 HOH A 46 428 46 HOH HOH . C 3 HOH A 47 429 47 HOH HOH . C 3 HOH A 48 430 48 HOH HOH . C 3 HOH A 49 431 49 HOH HOH . C 3 HOH A 50 432 50 HOH HOH . C 3 HOH A 51 433 51 HOH HOH . C 3 HOH A 52 434 52 HOH HOH . C 3 HOH A 53 435 53 HOH HOH . C 3 HOH A 54 436 54 HOH HOH . C 3 HOH A 55 437 55 HOH HOH . C 3 HOH A 56 438 56 HOH HOH . C 3 HOH A 57 439 57 HOH HOH . C 3 HOH A 58 440 58 HOH HOH . C 3 HOH A 59 441 59 HOH HOH . C 3 HOH A 60 442 60 HOH HOH . C 3 HOH A 61 443 61 HOH HOH . C 3 HOH A 62 444 62 HOH HOH . C 3 HOH A 63 445 63 HOH HOH . C 3 HOH A 64 446 64 HOH HOH . C 3 HOH A 65 447 65 HOH HOH . C 3 HOH A 66 448 66 HOH HOH . C 3 HOH A 67 449 67 HOH HOH . C 3 HOH A 68 450 68 HOH HOH . C 3 HOH A 69 451 69 HOH HOH . C 3 HOH A 70 452 70 HOH HOH . C 3 HOH A 71 453 71 HOH HOH . C 3 HOH A 72 454 72 HOH HOH . C 3 HOH A 73 455 73 HOH HOH . C 3 HOH A 74 456 74 HOH HOH . C 3 HOH A 75 457 75 HOH HOH . C 3 HOH A 76 458 76 HOH HOH . C 3 HOH A 77 459 77 HOH HOH . C 3 HOH A 78 460 78 HOH HOH . C 3 HOH A 79 461 79 HOH HOH . C 3 HOH A 80 462 80 HOH HOH . C 3 HOH A 81 463 81 HOH HOH . C 3 HOH A 82 464 82 HOH HOH . C 3 HOH A 83 465 83 HOH HOH . C 3 HOH A 84 466 84 HOH HOH . C 3 HOH A 85 467 85 HOH HOH . C 3 HOH A 86 468 86 HOH HOH . C 3 HOH A 87 469 87 HOH HOH . C 3 HOH A 88 470 88 HOH HOH . C 3 HOH A 89 471 89 HOH HOH . C 3 HOH A 90 472 90 HOH HOH . C 3 HOH A 91 473 91 HOH HOH . C 3 HOH A 92 474 92 HOH HOH . C 3 HOH A 93 475 93 HOH HOH . C 3 HOH A 94 476 94 HOH HOH . C 3 HOH A 95 477 95 HOH HOH . C 3 HOH A 96 478 96 HOH HOH . C 3 HOH A 97 479 97 HOH HOH . C 3 HOH A 98 480 98 HOH HOH . C 3 HOH A 99 481 99 HOH HOH . C 3 HOH A 100 482 100 HOH HOH . C 3 HOH A 101 483 101 HOH HOH . C 3 HOH A 102 484 102 HOH HOH . C 3 HOH A 103 485 103 HOH HOH . C 3 HOH A 104 486 104 HOH HOH . C 3 HOH A 105 487 105 HOH HOH . C 3 HOH A 106 488 106 HOH HOH . C 3 HOH A 107 489 107 HOH HOH . C 3 HOH A 108 490 108 HOH HOH . C 3 HOH A 109 491 109 HOH HOH . C 3 HOH A 110 492 110 HOH HOH . C 3 HOH A 111 493 111 HOH HOH . C 3 HOH A 112 494 112 HOH HOH . C 3 HOH A 113 495 113 HOH HOH . C 3 HOH A 114 496 114 HOH HOH . C 3 HOH A 115 497 115 HOH HOH . C 3 HOH A 116 498 116 HOH HOH . C 3 HOH A 117 499 117 HOH HOH . C 3 HOH A 118 500 118 HOH HOH . C 3 HOH A 119 501 119 HOH HOH . C 3 HOH A 120 502 120 HOH HOH . C 3 HOH A 121 503 121 HOH HOH . C 3 HOH A 122 504 122 HOH HOH . C 3 HOH A 123 505 123 HOH HOH . C 3 HOH A 124 506 124 HOH HOH . C 3 HOH A 125 507 125 HOH HOH . C 3 HOH A 126 508 126 HOH HOH . C 3 HOH A 127 509 127 HOH HOH . C 3 HOH A 128 510 128 HOH HOH . C 3 HOH A 129 511 129 HOH HOH . C 3 HOH A 130 512 130 HOH HOH . C 3 HOH A 131 513 131 HOH HOH . C 3 HOH A 132 514 132 HOH HOH . C 3 HOH A 133 515 133 HOH HOH . C 3 HOH A 134 516 134 HOH HOH . C 3 HOH A 135 517 135 HOH HOH . C 3 HOH A 136 518 136 HOH HOH . C 3 HOH A 137 519 137 HOH HOH . C 3 HOH A 138 520 138 HOH HOH . C 3 HOH A 139 521 139 HOH HOH . C 3 HOH A 140 522 140 HOH HOH . C 3 HOH A 141 523 141 HOH HOH . C 3 HOH A 142 524 142 HOH HOH . C 3 HOH A 143 525 143 HOH HOH . C 3 HOH A 144 526 144 HOH HOH . C 3 HOH A 145 527 145 HOH HOH . C 3 HOH A 146 528 146 HOH HOH . C 3 HOH A 147 529 147 HOH HOH . C 3 HOH A 148 530 148 HOH HOH . C 3 HOH A 149 531 149 HOH HOH . C 3 HOH A 150 532 150 HOH HOH . C 3 HOH A 151 533 151 HOH HOH . C 3 HOH A 152 534 152 HOH HOH . C 3 HOH A 153 535 153 HOH HOH . C 3 HOH A 154 536 154 HOH HOH . C 3 HOH A 155 537 155 HOH HOH . C 3 HOH A 156 538 156 HOH HOH . C 3 HOH A 157 539 157 HOH HOH . C 3 HOH A 158 540 158 HOH HOH . C 3 HOH A 159 541 159 HOH HOH . C 3 HOH A 160 542 160 HOH HOH . C 3 HOH A 161 543 161 HOH HOH . C 3 HOH A 162 544 162 HOH HOH . C 3 HOH A 163 545 163 HOH HOH . C 3 HOH A 164 546 164 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x -46.156 _atom_site.Cartn_y 26.647 _atom_site.Cartn_z 22.773 _atom_site.occupancy 0.33 _atom_site.B_iso_or_equiv 38.71 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 382 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #