data_1YUC
#
_model_server_result.job_id            z05Jdg0UhJ95b6fssAt-uQ 
_model_server_result.datetime_utc      '2024-11-19 09:48:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1yuc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":5003}' 
#
_entry.id    1YUC 
#
_exptl.entry_id    1YUC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          100.69 
_cell.angle_gamma         90 
_cell.entry_id            1YUC 
_cell.length_a            63.67 
_cell.length_b            59.64 
_cell.length_c            73.24 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1YUC 
_symmetry.cell_setting             monoclinic 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA tetrameric 4 software_defined_assembly 3 
PISA tetrameric 4 software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,F,J,L 1 1 
B,D,G,H,I,K,M 2 1 
B,D,G,H,I,K,M 3 1 
A,C,E,F,J,L 3 2 
A,B,C,D,E,F,G,H,I,J,K,L,M 4 1 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 1_445 x-1,y-1,z 1 0 0 0 1 0 0 0 1 -63.67 -59.64 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 H N N 
? 4 I N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 245 n n 
C1 C2 GOL sing 246 n n 
C1 H11 GOL sing 247 n n 
C1 H12 GOL sing 248 n n 
O1 HO1 GOL sing 249 n n 
C2 O2 GOL sing 250 n n 
C2 C3 GOL sing 251 n n 
C2 H2 GOL sing 252 n n 
O2 HO2 GOL sing 253 n n 
C3 O3 GOL sing 254 n n 
C3 H31 GOL sing 255 n n 
C3 H32 GOL sing 256 n n 
O3 HO3 GOL sing 257 n n 
#
_atom_sites.entry_id                     1YUC 
_atom_sites.fract_transf_matrix[1][1]    0.015706 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002965 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016767 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013895 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 EPH A 1 1001 1001 EPH EPH . 
F 4 GOL A 1 5001 5001 GOL GOL . 
G 3 EPH B 1 1002 1002 EPH EPH . 
H 4 GOL B 1 5002 5002 GOL GOL . 
I 4 GOL B 1 5003 5003 GOL GOL . 
J 5 HOH A 1 1 1 HOH HOH . 
J 5 HOH A 2 2 2 HOH HOH . 
J 5 HOH A 3 3 3 HOH HOH . 
J 5 HOH A 4 7 7 HOH HOH . 
J 5 HOH A 5 13 13 HOH HOH . 
J 5 HOH A 6 15 15 HOH HOH . 
J 5 HOH A 7 16 16 HOH HOH . 
J 5 HOH A 8 17 17 HOH HOH . 
J 5 HOH A 9 19 19 HOH HOH . 
J 5 HOH A 10 20 20 HOH HOH . 
J 5 HOH A 11 21 21 HOH HOH . 
J 5 HOH A 12 22 22 HOH HOH . 
J 5 HOH A 13 23 23 HOH HOH . 
J 5 HOH A 14 24 24 HOH HOH . 
J 5 HOH A 15 25 25 HOH HOH . 
J 5 HOH A 16 26 26 HOH HOH . 
J 5 HOH A 17 27 27 HOH HOH . 
J 5 HOH A 18 30 30 HOH HOH . 
J 5 HOH A 19 31 31 HOH HOH . 
J 5 HOH A 20 32 32 HOH HOH . 
J 5 HOH A 21 33 33 HOH HOH . 
J 5 HOH A 22 37 37 HOH HOH . 
J 5 HOH A 23 39 39 HOH HOH . 
J 5 HOH A 24 40 40 HOH HOH . 
J 5 HOH A 25 42 42 HOH HOH . 
J 5 HOH A 26 43 43 HOH HOH . 
J 5 HOH A 27 46 46 HOH HOH . 
J 5 HOH A 28 49 49 HOH HOH . 
J 5 HOH A 29 50 50 HOH HOH . 
J 5 HOH A 30 51 51 HOH HOH . 
J 5 HOH A 31 52 52 HOH HOH . 
J 5 HOH A 32 54 54 HOH HOH . 
J 5 HOH A 33 57 57 HOH HOH . 
J 5 HOH A 34 60 60 HOH HOH . 
J 5 HOH A 35 63 63 HOH HOH . 
J 5 HOH A 36 64 64 HOH HOH . 
J 5 HOH A 37 69 69 HOH HOH . 
J 5 HOH A 38 70 70 HOH HOH . 
J 5 HOH A 39 71 71 HOH HOH . 
J 5 HOH A 40 72 72 HOH HOH . 
J 5 HOH A 41 74 74 HOH HOH . 
J 5 HOH A 42 75 75 HOH HOH . 
J 5 HOH A 43 76 76 HOH HOH . 
J 5 HOH A 44 79 79 HOH HOH . 
J 5 HOH A 45 80 80 HOH HOH . 
J 5 HOH A 46 81 81 HOH HOH . 
J 5 HOH A 47 83 83 HOH HOH . 
J 5 HOH A 48 84 84 HOH HOH . 
J 5 HOH A 49 87 87 HOH HOH . 
J 5 HOH A 50 88 88 HOH HOH . 
J 5 HOH A 51 90 90 HOH HOH . 
J 5 HOH A 52 92 92 HOH HOH . 
J 5 HOH A 53 96 96 HOH HOH . 
J 5 HOH A 54 97 97 HOH HOH . 
J 5 HOH A 55 99 99 HOH HOH . 
J 5 HOH A 56 101 101 HOH HOH . 
J 5 HOH A 57 112 112 HOH HOH . 
J 5 HOH A 58 115 115 HOH HOH . 
J 5 HOH A 59 116 116 HOH HOH . 
J 5 HOH A 60 118 118 HOH HOH . 
J 5 HOH A 61 119 119 HOH HOH . 
J 5 HOH A 62 120 120 HOH HOH . 
J 5 HOH A 63 121 121 HOH HOH . 
J 5 HOH A 64 124 124 HOH HOH . 
J 5 HOH A 65 126 126 HOH HOH . 
J 5 HOH A 66 130 130 HOH HOH . 
J 5 HOH A 67 131 131 HOH HOH . 
J 5 HOH A 68 135 135 HOH HOH . 
J 5 HOH A 69 139 139 HOH HOH . 
J 5 HOH A 70 140 140 HOH HOH . 
J 5 HOH A 71 142 142 HOH HOH . 
J 5 HOH A 72 143 143 HOH HOH . 
J 5 HOH A 73 147 147 HOH HOH . 
J 5 HOH A 74 151 151 HOH HOH . 
J 5 HOH A 75 155 155 HOH HOH . 
J 5 HOH A 76 156 156 HOH HOH . 
J 5 HOH A 77 157 157 HOH HOH . 
J 5 HOH A 78 160 160 HOH HOH . 
J 5 HOH A 79 163 163 HOH HOH . 
J 5 HOH A 80 165 165 HOH HOH . 
J 5 HOH A 81 166 166 HOH HOH . 
J 5 HOH A 82 169 169 HOH HOH . 
J 5 HOH A 83 170 170 HOH HOH . 
J 5 HOH A 84 171 171 HOH HOH . 
J 5 HOH A 85 172 172 HOH HOH . 
J 5 HOH A 86 173 173 HOH HOH . 
J 5 HOH A 87 174 174 HOH HOH . 
J 5 HOH A 88 175 175 HOH HOH . 
J 5 HOH A 89 176 176 HOH HOH . 
J 5 HOH A 90 177 177 HOH HOH . 
J 5 HOH A 91 178 178 HOH HOH . 
J 5 HOH A 92 179 179 HOH HOH . 
J 5 HOH A 93 180 180 HOH HOH . 
J 5 HOH A 94 182 182 HOH HOH . 
J 5 HOH A 95 183 183 HOH HOH . 
J 5 HOH A 96 184 184 HOH HOH . 
J 5 HOH A 97 185 185 HOH HOH . 
J 5 HOH A 98 186 186 HOH HOH . 
J 5 HOH A 99 187 187 HOH HOH . 
J 5 HOH A 100 195 195 HOH HOH . 
J 5 HOH A 101 198 198 HOH HOH . 
J 5 HOH A 102 199 199 HOH HOH . 
J 5 HOH A 103 200 200 HOH HOH . 
J 5 HOH A 104 201 201 HOH HOH . 
J 5 HOH A 105 202 202 HOH HOH . 
J 5 HOH A 106 205 205 HOH HOH . 
J 5 HOH A 107 210 210 HOH HOH . 
J 5 HOH A 108 211 211 HOH HOH . 
J 5 HOH A 109 214 214 HOH HOH . 
J 5 HOH A 110 217 217 HOH HOH . 
J 5 HOH A 111 218 218 HOH HOH . 
J 5 HOH A 112 219 219 HOH HOH . 
J 5 HOH A 113 220 220 HOH HOH . 
J 5 HOH A 114 222 222 HOH HOH . 
J 5 HOH A 115 225 225 HOH HOH . 
J 5 HOH A 116 226 226 HOH HOH . 
J 5 HOH A 117 228 228 HOH HOH . 
J 5 HOH A 118 231 231 HOH HOH . 
J 5 HOH A 119 232 232 HOH HOH . 
J 5 HOH A 120 234 234 HOH HOH . 
J 5 HOH A 121 237 237 HOH HOH . 
J 5 HOH A 122 240 240 HOH HOH . 
J 5 HOH A 123 241 241 HOH HOH . 
J 5 HOH A 124 244 244 HOH HOH . 
K 5 HOH B 1 4 4 HOH HOH . 
K 5 HOH B 2 5 5 HOH HOH . 
K 5 HOH B 3 6 6 HOH HOH . 
K 5 HOH B 4 8 8 HOH HOH . 
K 5 HOH B 5 9 9 HOH HOH . 
K 5 HOH B 6 10 10 HOH HOH . 
K 5 HOH B 7 11 11 HOH HOH . 
K 5 HOH B 8 12 12 HOH HOH . 
K 5 HOH B 9 14 14 HOH HOH . 
K 5 HOH B 10 18 18 HOH HOH . 
K 5 HOH B 11 28 28 HOH HOH . 
K 5 HOH B 12 29 29 HOH HOH . 
K 5 HOH B 13 34 34 HOH HOH . 
K 5 HOH B 14 35 35 HOH HOH . 
K 5 HOH B 15 36 36 HOH HOH . 
K 5 HOH B 16 38 38 HOH HOH . 
K 5 HOH B 17 41 41 HOH HOH . 
K 5 HOH B 18 47 47 HOH HOH . 
K 5 HOH B 19 48 48 HOH HOH . 
K 5 HOH B 20 53 53 HOH HOH . 
K 5 HOH B 21 55 55 HOH HOH . 
K 5 HOH B 22 56 56 HOH HOH . 
K 5 HOH B 23 58 58 HOH HOH . 
K 5 HOH B 24 59 59 HOH HOH . 
K 5 HOH B 25 61 61 HOH HOH . 
K 5 HOH B 26 62 62 HOH HOH . 
K 5 HOH B 27 65 65 HOH HOH . 
K 5 HOH B 28 66 66 HOH HOH . 
K 5 HOH B 29 67 67 HOH HOH . 
K 5 HOH B 30 77 77 HOH HOH . 
K 5 HOH B 31 78 78 HOH HOH . 
K 5 HOH B 32 82 82 HOH HOH . 
K 5 HOH B 33 85 85 HOH HOH . 
K 5 HOH B 34 86 86 HOH HOH . 
K 5 HOH B 35 89 89 HOH HOH . 
K 5 HOH B 36 91 91 HOH HOH . 
K 5 HOH B 37 93 93 HOH HOH . 
K 5 HOH B 38 94 94 HOH HOH . 
K 5 HOH B 39 95 95 HOH HOH . 
K 5 HOH B 40 98 98 HOH HOH . 
K 5 HOH B 41 100 100 HOH HOH . 
K 5 HOH B 42 102 102 HOH HOH . 
K 5 HOH B 43 103 103 HOH HOH . 
K 5 HOH B 44 104 104 HOH HOH . 
K 5 HOH B 45 105 105 HOH HOH . 
K 5 HOH B 46 106 106 HOH HOH . 
K 5 HOH B 47 107 107 HOH HOH . 
K 5 HOH B 48 109 109 HOH HOH . 
K 5 HOH B 49 110 110 HOH HOH . 
K 5 HOH B 50 111 111 HOH HOH . 
K 5 HOH B 51 113 113 HOH HOH . 
K 5 HOH B 52 114 114 HOH HOH . 
K 5 HOH B 53 122 122 HOH HOH . 
K 5 HOH B 54 123 123 HOH HOH . 
K 5 HOH B 55 125 125 HOH HOH . 
K 5 HOH B 56 127 127 HOH HOH . 
K 5 HOH B 57 128 128 HOH HOH . 
K 5 HOH B 58 129 129 HOH HOH . 
K 5 HOH B 59 132 132 HOH HOH . 
K 5 HOH B 60 133 133 HOH HOH . 
K 5 HOH B 61 134 134 HOH HOH . 
K 5 HOH B 62 136 136 HOH HOH . 
K 5 HOH B 63 137 137 HOH HOH . 
K 5 HOH B 64 138 138 HOH HOH . 
K 5 HOH B 65 141 141 HOH HOH . 
K 5 HOH B 66 144 144 HOH HOH . 
K 5 HOH B 67 145 145 HOH HOH . 
K 5 HOH B 68 146 146 HOH HOH . 
K 5 HOH B 69 148 148 HOH HOH . 
K 5 HOH B 70 149 149 HOH HOH . 
K 5 HOH B 71 150 150 HOH HOH . 
K 5 HOH B 72 152 152 HOH HOH . 
K 5 HOH B 73 153 153 HOH HOH . 
K 5 HOH B 74 158 158 HOH HOH . 
K 5 HOH B 75 159 159 HOH HOH . 
K 5 HOH B 76 161 161 HOH HOH . 
K 5 HOH B 77 162 162 HOH HOH . 
K 5 HOH B 78 164 164 HOH HOH . 
K 5 HOH B 79 167 167 HOH HOH . 
K 5 HOH B 80 168 168 HOH HOH . 
K 5 HOH B 81 188 188 HOH HOH . 
K 5 HOH B 82 189 189 HOH HOH . 
K 5 HOH B 83 190 190 HOH HOH . 
K 5 HOH B 84 191 191 HOH HOH . 
K 5 HOH B 85 192 192 HOH HOH . 
K 5 HOH B 86 193 193 HOH HOH . 
K 5 HOH B 87 194 194 HOH HOH . 
K 5 HOH B 88 197 197 HOH HOH . 
K 5 HOH B 89 203 203 HOH HOH . 
K 5 HOH B 90 204 204 HOH HOH . 
K 5 HOH B 91 206 206 HOH HOH . 
K 5 HOH B 92 207 207 HOH HOH . 
K 5 HOH B 93 208 208 HOH HOH . 
K 5 HOH B 94 212 212 HOH HOH . 
K 5 HOH B 95 213 213 HOH HOH . 
K 5 HOH B 96 215 215 HOH HOH . 
K 5 HOH B 97 216 216 HOH HOH . 
K 5 HOH B 98 221 221 HOH HOH . 
K 5 HOH B 99 223 223 HOH HOH . 
K 5 HOH B 100 224 224 HOH HOH . 
K 5 HOH B 101 227 227 HOH HOH . 
K 5 HOH B 102 230 230 HOH HOH . 
K 5 HOH B 103 233 233 HOH HOH . 
K 5 HOH B 104 235 235 HOH HOH . 
K 5 HOH B 105 236 236 HOH HOH . 
K 5 HOH B 106 238 238 HOH HOH . 
K 5 HOH B 107 239 239 HOH HOH . 
K 5 HOH B 108 242 242 HOH HOH . 
K 5 HOH B 109 245 245 HOH HOH . 
K 5 HOH B 110 246 246 HOH HOH . 
L 5 HOH C 1 44 44 HOH HOH . 
L 5 HOH C 2 45 45 HOH HOH . 
L 5 HOH C 3 73 73 HOH HOH . 
L 5 HOH C 4 117 117 HOH HOH . 
L 5 HOH C 5 181 181 HOH HOH . 
L 5 HOH C 6 196 196 HOH HOH . 
L 5 HOH C 7 209 209 HOH HOH . 
L 5 HOH C 8 229 229 HOH HOH . 
L 5 HOH C 9 243 243 HOH HOH . 
M 5 HOH D 1 108 108 HOH HOH . 
M 5 HOH D 2 154 154 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . I 4 22.812 -20.963 23.443 1 80.69 ? C1 GOL 5003 B 1 
HETATM 2 O O1 GOL . . . I 4 23.448 -20.829 21.967 1 80.4 ? O1 GOL 5003 B 1 
HETATM 3 C C2 GOL . . . I 4 21.688 -20.28 23.918 1 80.71 ? C2 GOL 5003 B 1 
HETATM 4 O O2 GOL . . . I 4 22.035 -19.229 24.682 1 81.11 ? O2 GOL 5003 B 1 
HETATM 5 C C3 GOL . . . I 4 20.686 -20.824 23.521 1 80.75 ? C3 GOL 5003 B 1 
HETATM 6 O O3 GOL . . . I 4 19.758 -21.843 22.784 1 79.89 ? O3 GOL 5003 B 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           275 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           6 
#