data_1YUL # _model_server_result.job_id ZvZJInAxX5W-jz35MfgIow _model_server_result.datetime_utc '2024-11-23 07:24:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1yul # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":230}' # _entry.id 1YUL # _exptl.entry_id 1YUL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.124 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1YUL _cell.length_a 65.525 _cell.length_b 65.525 _cell.length_c 110.34 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YUL _symmetry.cell_setting ? _symmetry.Int_Tables_number 95 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C HIS 39 A HIS 19 1_555 A N MSE 40 A MSE 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 A C MSE 40 A MSE 20 1_555 A N ARG 41 A ARG 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 A C GLU 45 A GLU 25 1_555 A N MSE 46 A MSE 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale4 A C MSE 46 A MSE 26 1_555 A N ALA 47 A ALA 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale5 A C ALA 78 A ALA 58 1_555 A N MSE 79 A MSE 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale6 A C MSE 79 A MSE 59 1_555 A N VAL 80 A VAL 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale7 A C PHE 123 A PHE 103 1_555 A N MSE 124 A MSE 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale8 A C MSE 124 A MSE 104 1_555 A N LEU 125 A LEU 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? # _chem_comp.formula 'C6 H8 O7' _chem_comp.formula_weight 192.124 _chem_comp.id CIT _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 CIT doub 70 n n C1 O2 CIT sing 71 n n C1 C2 CIT sing 72 n n O2 HO2 CIT sing 73 n n C2 C3 CIT sing 74 n n C2 H21 CIT sing 75 n n C2 H22 CIT sing 76 n n C3 O7 CIT sing 77 n n C3 C4 CIT sing 78 n n C3 C6 CIT sing 79 n n O7 HO7 CIT sing 80 n n C4 C5 CIT sing 81 n n C4 H41 CIT sing 82 n n C4 H42 CIT sing 83 n n C5 O3 CIT doub 84 n n C5 O4 CIT sing 85 n n O4 HO4 CIT sing 86 n n C6 O5 CIT doub 87 n n C6 O6 CIT sing 88 n n O6 HO6 CIT sing 89 n n # _atom_sites.entry_id 1YUL _atom_sites.fract_transf_matrix[1][1] 0.015261 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015261 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009063 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CIT A 1 230 230 CIT CIT . C 3 HOH A 1 401 401 HOH TIP . C 3 HOH A 2 402 402 HOH TIP . C 3 HOH A 3 403 403 HOH TIP . C 3 HOH A 4 404 404 HOH TIP . C 3 HOH A 5 405 405 HOH TIP . C 3 HOH A 6 406 406 HOH TIP . C 3 HOH A 7 407 407 HOH TIP . C 3 HOH A 8 408 408 HOH TIP . C 3 HOH A 9 409 409 HOH TIP . C 3 HOH A 10 410 410 HOH TIP . C 3 HOH A 11 411 411 HOH TIP . C 3 HOH A 12 412 412 HOH TIP . C 3 HOH A 13 413 413 HOH TIP . C 3 HOH A 14 414 414 HOH TIP . C 3 HOH A 15 415 415 HOH TIP . C 3 HOH A 16 416 416 HOH TIP . C 3 HOH A 17 417 417 HOH TIP . C 3 HOH A 18 418 418 HOH TIP . C 3 HOH A 19 419 419 HOH TIP . C 3 HOH A 20 420 420 HOH TIP . C 3 HOH A 21 421 421 HOH TIP . C 3 HOH A 22 422 422 HOH TIP . C 3 HOH A 23 423 423 HOH TIP . C 3 HOH A 24 424 424 HOH TIP . C 3 HOH A 25 425 425 HOH TIP . C 3 HOH A 26 426 426 HOH TIP . C 3 HOH A 27 427 427 HOH TIP . C 3 HOH A 28 428 428 HOH TIP . C 3 HOH A 29 429 429 HOH TIP . C 3 HOH A 30 430 430 HOH TIP . C 3 HOH A 31 431 431 HOH TIP . C 3 HOH A 32 432 432 HOH TIP . C 3 HOH A 33 433 433 HOH TIP . C 3 HOH A 34 434 434 HOH TIP . C 3 HOH A 35 435 435 HOH TIP . C 3 HOH A 36 436 436 HOH TIP . C 3 HOH A 37 437 437 HOH TIP . C 3 HOH A 38 438 438 HOH TIP . C 3 HOH A 39 439 439 HOH TIP . C 3 HOH A 40 440 440 HOH TIP . C 3 HOH A 41 441 441 HOH TIP . C 3 HOH A 42 442 442 HOH TIP . C 3 HOH A 43 443 443 HOH TIP . C 3 HOH A 44 444 444 HOH TIP . C 3 HOH A 45 445 445 HOH TIP . C 3 HOH A 46 446 446 HOH TIP . C 3 HOH A 47 447 447 HOH TIP . C 3 HOH A 48 448 448 HOH TIP . C 3 HOH A 49 449 449 HOH TIP . C 3 HOH A 50 450 450 HOH TIP . C 3 HOH A 51 451 451 HOH TIP . C 3 HOH A 52 452 452 HOH TIP . C 3 HOH A 53 453 453 HOH TIP . C 3 HOH A 54 454 454 HOH TIP . C 3 HOH A 55 455 455 HOH TIP . C 3 HOH A 56 456 456 HOH TIP . C 3 HOH A 57 457 457 HOH TIP . C 3 HOH A 58 458 458 HOH TIP . C 3 HOH A 59 459 459 HOH TIP . C 3 HOH A 60 460 460 HOH TIP . C 3 HOH A 61 461 461 HOH TIP . C 3 HOH A 62 462 462 HOH TIP . C 3 HOH A 63 463 463 HOH TIP . C 3 HOH A 64 464 464 HOH TIP . C 3 HOH A 65 465 465 HOH TIP . C 3 HOH A 66 466 466 HOH TIP . C 3 HOH A 67 467 467 HOH TIP . C 3 HOH A 68 468 468 HOH TIP . C 3 HOH A 69 469 469 HOH TIP . C 3 HOH A 70 470 470 HOH TIP . C 3 HOH A 71 471 471 HOH TIP . C 3 HOH A 72 472 472 HOH TIP . C 3 HOH A 73 473 473 HOH TIP . C 3 HOH A 74 474 474 HOH TIP . C 3 HOH A 75 475 475 HOH TIP . C 3 HOH A 76 476 476 HOH TIP . C 3 HOH A 77 477 477 HOH TIP . C 3 HOH A 78 478 478 HOH TIP . C 3 HOH A 79 479 479 HOH TIP . C 3 HOH A 80 480 480 HOH TIP . C 3 HOH A 81 481 481 HOH TIP . C 3 HOH A 82 482 482 HOH TIP . C 3 HOH A 83 483 483 HOH TIP . C 3 HOH A 84 484 484 HOH TIP . C 3 HOH A 85 485 485 HOH TIP . C 3 HOH A 86 486 486 HOH TIP . C 3 HOH A 87 487 487 HOH TIP . C 3 HOH A 88 488 488 HOH TIP . C 3 HOH A 89 489 489 HOH TIP . C 3 HOH A 90 490 490 HOH TIP . C 3 HOH A 91 491 491 HOH TIP . C 3 HOH A 92 492 492 HOH TIP . C 3 HOH A 93 493 493 HOH TIP . C 3 HOH A 94 494 494 HOH TIP . C 3 HOH A 95 495 495 HOH TIP . C 3 HOH A 96 496 496 HOH TIP . C 3 HOH A 97 497 497 HOH TIP . C 3 HOH A 98 498 498 HOH TIP . C 3 HOH A 99 499 499 HOH TIP . C 3 HOH A 100 500 500 HOH TIP . C 3 HOH A 101 501 501 HOH TIP . C 3 HOH A 102 502 502 HOH TIP . C 3 HOH A 103 503 503 HOH TIP . C 3 HOH A 104 504 504 HOH TIP . C 3 HOH A 105 505 505 HOH TIP . C 3 HOH A 106 506 506 HOH TIP . C 3 HOH A 107 507 507 HOH TIP . C 3 HOH A 108 508 508 HOH TIP . C 3 HOH A 109 509 509 HOH TIP . C 3 HOH A 110 510 510 HOH TIP . C 3 HOH A 111 511 511 HOH TIP . C 3 HOH A 112 512 512 HOH TIP . C 3 HOH A 113 513 513 HOH TIP . C 3 HOH A 114 514 514 HOH TIP . C 3 HOH A 115 515 515 HOH TIP . C 3 HOH A 116 516 516 HOH TIP . C 3 HOH A 117 517 517 HOH TIP . C 3 HOH A 118 518 518 HOH TIP . C 3 HOH A 119 519 519 HOH TIP . C 3 HOH A 120 520 520 HOH TIP . C 3 HOH A 121 521 521 HOH TIP . C 3 HOH A 122 522 522 HOH TIP . C 3 HOH A 123 523 523 HOH TIP . C 3 HOH A 124 524 524 HOH TIP . C 3 HOH A 125 525 525 HOH TIP . C 3 HOH A 126 526 526 HOH TIP . C 3 HOH A 127 527 527 HOH TIP . C 3 HOH A 128 528 528 HOH TIP . C 3 HOH A 129 529 529 HOH TIP . C 3 HOH A 130 530 530 HOH TIP . C 3 HOH A 131 531 531 HOH TIP . C 3 HOH A 132 532 532 HOH TIP . C 3 HOH A 133 533 533 HOH TIP . C 3 HOH A 134 534 534 HOH TIP . C 3 HOH A 135 535 535 HOH TIP . C 3 HOH A 136 536 536 HOH TIP . C 3 HOH A 137 539 539 HOH TIP . C 3 HOH A 138 540 540 HOH TIP . C 3 HOH A 139 541 541 HOH TIP . C 3 HOH A 140 542 542 HOH TIP . C 3 HOH A 141 543 543 HOH TIP . C 3 HOH A 142 544 544 HOH TIP . C 3 HOH A 143 545 545 HOH TIP . C 3 HOH A 144 546 546 HOH TIP . C 3 HOH A 145 547 547 HOH TIP . C 3 HOH A 146 548 548 HOH TIP . C 3 HOH A 147 549 549 HOH TIP . C 3 HOH A 148 550 550 HOH TIP . C 3 HOH A 149 551 551 HOH TIP . C 3 HOH A 150 552 552 HOH TIP . C 3 HOH A 151 553 553 HOH TIP . C 3 HOH A 152 554 554 HOH TIP . C 3 HOH A 153 555 555 HOH TIP . C 3 HOH A 154 556 556 HOH TIP . C 3 HOH A 155 557 557 HOH TIP . C 3 HOH A 156 558 558 HOH TIP . C 3 HOH A 157 559 559 HOH TIP . C 3 HOH A 158 560 560 HOH TIP . C 3 HOH A 159 561 561 HOH TIP . C 3 HOH A 160 562 562 HOH TIP . C 3 HOH A 161 563 563 HOH TIP . C 3 HOH A 162 564 564 HOH TIP . C 3 HOH A 163 565 565 HOH TIP . C 3 HOH A 164 566 566 HOH TIP . C 3 HOH A 165 567 567 HOH TIP . C 3 HOH A 166 568 568 HOH TIP . C 3 HOH A 167 569 569 HOH TIP . C 3 HOH A 168 570 570 HOH TIP . C 3 HOH A 169 571 571 HOH TIP . C 3 HOH A 170 572 572 HOH TIP . C 3 HOH A 171 573 573 HOH TIP . C 3 HOH A 172 574 574 HOH TIP . C 3 HOH A 173 575 575 HOH TIP . C 3 HOH A 174 576 576 HOH TIP . C 3 HOH A 175 577 577 HOH TIP . C 3 HOH A 176 578 578 HOH TIP . C 3 HOH A 177 579 579 HOH TIP . C 3 HOH A 178 580 580 HOH TIP . C 3 HOH A 179 581 581 HOH TIP . C 3 HOH A 180 582 582 HOH TIP . C 3 HOH A 181 583 583 HOH TIP . C 3 HOH A 182 584 584 HOH TIP . C 3 HOH A 183 585 585 HOH TIP . C 3 HOH A 184 586 586 HOH TIP . C 3 HOH A 185 587 587 HOH TIP . C 3 HOH A 186 588 588 HOH TIP . C 3 HOH A 187 589 589 HOH TIP . C 3 HOH A 188 590 590 HOH TIP . C 3 HOH A 189 591 591 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CIT . . . B 2 44.608 30.433 71.936 1 79.86 ? C1 CIT 230 A 1 HETATM 2 O O1 CIT . . . B 2 44.502 30.713 73.175 1 80.15 ? O1 CIT 230 A 1 HETATM 3 O O2 CIT . . . B 2 44.474 29.313 71.554 1 80.46 ? O2 CIT 230 A 1 HETATM 4 C C2 CIT . . . B 2 44.898 31.591 71.008 1 78.29 ? C2 CIT 230 A 1 HETATM 5 C C3 CIT . . . B 2 45.02 31.21 69.504 1 77.49 ? C3 CIT 230 A 1 HETATM 6 O O7 CIT . . . B 2 43.795 30.619 69.036 1 77.42 ? O7 CIT 230 A 1 HETATM 7 C C4 CIT . . . B 2 45.307 32.467 68.595 1 77.04 ? C4 CIT 230 A 1 HETATM 8 C C5 CIT . . . B 2 44.073 33.438 68.617 1 76.08 ? C5 CIT 230 A 1 HETATM 9 O O3 CIT . . . B 2 42.933 33.262 68.157 1 76.44 ? O3 CIT 230 A 1 HETATM 10 O O4 CIT . . . B 2 44.437 34.524 69.223 1 75.34 ? O4 CIT 230 A 1 HETATM 11 C C6 CIT . . . B 2 46.067 30.145 68.993 1 77.44 ? C6 CIT 230 A 1 HETATM 12 O O5 CIT . . . B 2 45.907 29.128 68.299 1 77.69 ? O5 CIT 230 A 1 HETATM 13 O O6 CIT . . . B 2 47.164 30.577 69.473 1 75.64 ? O6 CIT 230 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 13 #