data_1YUN # _model_server_result.job_id 5CW5A7Oc-EHzLLHjchgITQ _model_server_result.datetime_utc '2024-10-19 05:28:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1yun # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":230}' # _entry.id 1YUN # _exptl.entry_id 1YUN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1YUN _cell.length_a 65.189 _cell.length_b 65.199 _cell.length_c 110.121 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YUN _symmetry.cell_setting ? _symmetry.Int_Tables_number 17 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,F 1 1 B,D,E,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B NE2 HIS 36 B HIS 16 1_555 D MG MG . B MG 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.585 ? metalc ? metalc2 B N ALA 199 B ALA 179 1_555 D MG MG . B MG 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.546 ? metalc ? metalc3 D MG MG . B MG 230 1_555 E O1B ATP . B ATP 1220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc4 D MG MG . B MG 230 1_555 E O2B ATP . B ATP 1220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.97 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1YUN _atom_sites.fract_transf_matrix[1][1] 0.01534 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015338 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009081 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ATP A 1 223 220 ATP ATP . D 3 MG B 1 230 230 MG MG . E 2 ATP B 1 1220 220 ATP ATP . F 4 HOH A 1 302 302 HOH HOH . F 4 HOH A 2 303 303 HOH HOH . F 4 HOH A 3 304 304 HOH HOH . F 4 HOH A 4 307 307 HOH HOH . F 4 HOH A 5 309 309 HOH HOH . F 4 HOH A 6 311 311 HOH HOH . F 4 HOH A 7 312 312 HOH HOH . F 4 HOH A 8 315 315 HOH HOH . F 4 HOH A 9 317 317 HOH HOH . F 4 HOH A 10 319 319 HOH HOH . F 4 HOH A 11 320 320 HOH HOH . F 4 HOH A 12 321 321 HOH HOH . F 4 HOH A 13 323 323 HOH HOH . F 4 HOH A 14 324 324 HOH HOH . F 4 HOH A 15 325 325 HOH HOH . F 4 HOH A 16 329 329 HOH HOH . F 4 HOH A 17 333 333 HOH HOH . F 4 HOH A 18 336 336 HOH HOH . F 4 HOH A 19 338 338 HOH HOH . F 4 HOH A 20 339 339 HOH HOH . F 4 HOH A 21 342 342 HOH HOH . F 4 HOH A 22 343 343 HOH HOH . F 4 HOH A 23 347 347 HOH HOH . F 4 HOH A 24 349 349 HOH HOH . F 4 HOH A 25 350 350 HOH HOH . F 4 HOH A 26 351 351 HOH HOH . F 4 HOH A 27 354 354 HOH HOH . F 4 HOH A 28 355 355 HOH HOH . F 4 HOH A 29 358 358 HOH HOH . F 4 HOH A 30 360 360 HOH HOH . F 4 HOH A 31 362 362 HOH HOH . F 4 HOH A 32 365 365 HOH HOH . F 4 HOH A 33 366 366 HOH HOH . F 4 HOH A 34 370 370 HOH HOH . F 4 HOH A 35 371 371 HOH HOH . F 4 HOH A 36 373 373 HOH HOH . F 4 HOH A 37 374 374 HOH HOH . F 4 HOH A 38 375 375 HOH HOH . F 4 HOH A 39 376 376 HOH HOH . F 4 HOH A 40 377 377 HOH HOH . F 4 HOH A 41 378 378 HOH HOH . F 4 HOH A 42 385 385 HOH HOH . F 4 HOH A 43 388 388 HOH HOH . F 4 HOH A 44 394 394 HOH HOH . F 4 HOH A 45 396 396 HOH HOH . F 4 HOH A 46 398 398 HOH HOH . F 4 HOH A 47 399 399 HOH HOH . F 4 HOH A 48 401 401 HOH HOH . F 4 HOH A 49 405 405 HOH HOH . F 4 HOH A 50 406 406 HOH HOH . F 4 HOH A 51 407 407 HOH HOH . F 4 HOH A 52 408 408 HOH HOH . F 4 HOH A 53 412 412 HOH HOH . F 4 HOH A 54 413 413 HOH HOH . F 4 HOH A 55 414 414 HOH HOH . F 4 HOH A 56 415 415 HOH HOH . F 4 HOH A 57 416 416 HOH HOH . F 4 HOH A 58 418 418 HOH HOH . F 4 HOH A 59 419 419 HOH HOH . F 4 HOH A 60 421 421 HOH HOH . F 4 HOH A 61 422 422 HOH HOH . F 4 HOH A 62 423 423 HOH HOH . F 4 HOH A 63 424 424 HOH HOH . F 4 HOH A 64 425 425 HOH HOH . F 4 HOH A 65 426 426 HOH HOH . F 4 HOH A 66 428 428 HOH HOH . F 4 HOH A 67 429 429 HOH HOH . F 4 HOH A 68 430 430 HOH HOH . F 4 HOH A 69 431 431 HOH HOH . F 4 HOH A 70 433 433 HOH HOH . F 4 HOH A 71 436 436 HOH HOH . F 4 HOH A 72 439 439 HOH HOH . F 4 HOH A 73 442 442 HOH HOH . F 4 HOH A 74 444 444 HOH HOH . F 4 HOH A 75 446 446 HOH HOH . F 4 HOH A 76 450 450 HOH HOH . F 4 HOH A 77 451 451 HOH HOH . F 4 HOH A 78 453 453 HOH HOH . F 4 HOH A 79 455 455 HOH HOH . F 4 HOH A 80 456 456 HOH HOH . F 4 HOH A 81 457 457 HOH HOH . F 4 HOH A 82 459 459 HOH HOH . F 4 HOH A 83 460 460 HOH HOH . F 4 HOH A 84 463 463 HOH HOH . F 4 HOH A 85 465 465 HOH HOH . F 4 HOH A 86 466 466 HOH HOH . F 4 HOH A 87 467 467 HOH HOH . F 4 HOH A 88 468 468 HOH HOH . F 4 HOH A 89 470 470 HOH HOH . F 4 HOH A 90 475 475 HOH HOH . F 4 HOH A 91 476 476 HOH HOH . F 4 HOH A 92 477 477 HOH HOH . F 4 HOH A 93 485 485 HOH HOH . F 4 HOH A 94 488 488 HOH HOH . F 4 HOH A 95 489 489 HOH HOH . F 4 HOH A 96 494 494 HOH HOH . F 4 HOH A 97 495 495 HOH HOH . F 4 HOH A 98 496 496 HOH HOH . F 4 HOH A 99 497 497 HOH HOH . F 4 HOH A 100 500 500 HOH HOH . F 4 HOH A 101 502 502 HOH HOH . F 4 HOH A 102 503 503 HOH HOH . F 4 HOH A 103 504 504 HOH HOH . F 4 HOH A 104 508 508 HOH HOH . F 4 HOH A 105 511 511 HOH HOH . F 4 HOH A 106 516 516 HOH HOH . F 4 HOH A 107 519 519 HOH HOH . F 4 HOH A 108 520 520 HOH HOH . F 4 HOH A 109 521 521 HOH HOH . F 4 HOH A 110 522 522 HOH HOH . F 4 HOH A 111 528 528 HOH HOH . F 4 HOH A 112 529 529 HOH HOH . F 4 HOH A 113 532 532 HOH HOH . F 4 HOH A 114 533 533 HOH HOH . F 4 HOH A 115 534 534 HOH HOH . F 4 HOH A 116 537 537 HOH HOH . F 4 HOH A 117 539 539 HOH HOH . F 4 HOH A 118 540 540 HOH HOH . F 4 HOH A 119 541 541 HOH HOH . F 4 HOH A 120 543 543 HOH HOH . F 4 HOH A 121 544 544 HOH HOH . F 4 HOH A 122 545 545 HOH HOH . F 4 HOH A 123 546 546 HOH HOH . F 4 HOH A 124 548 548 HOH HOH . F 4 HOH A 125 549 549 HOH HOH . F 4 HOH A 126 550 550 HOH HOH . F 4 HOH A 127 552 552 HOH HOH . F 4 HOH A 128 553 553 HOH HOH . F 4 HOH A 129 556 556 HOH HOH . G 4 HOH B 1 301 301 HOH HOH . G 4 HOH B 2 305 305 HOH HOH . G 4 HOH B 3 306 306 HOH HOH . G 4 HOH B 4 308 308 HOH HOH . G 4 HOH B 5 310 310 HOH HOH . G 4 HOH B 6 313 313 HOH HOH . G 4 HOH B 7 314 314 HOH HOH . G 4 HOH B 8 316 316 HOH HOH . G 4 HOH B 9 318 318 HOH HOH . G 4 HOH B 10 322 322 HOH HOH . G 4 HOH B 11 326 326 HOH HOH . G 4 HOH B 12 327 327 HOH HOH . G 4 HOH B 13 328 328 HOH HOH . G 4 HOH B 14 330 330 HOH HOH . G 4 HOH B 15 331 331 HOH HOH . G 4 HOH B 16 332 332 HOH HOH . G 4 HOH B 17 334 334 HOH HOH . G 4 HOH B 18 335 335 HOH HOH . G 4 HOH B 19 337 337 HOH HOH . G 4 HOH B 20 340 340 HOH HOH . G 4 HOH B 21 341 341 HOH HOH . G 4 HOH B 22 344 344 HOH HOH . G 4 HOH B 23 345 345 HOH HOH . G 4 HOH B 24 346 346 HOH HOH . G 4 HOH B 25 348 348 HOH HOH . G 4 HOH B 26 352 352 HOH HOH . G 4 HOH B 27 353 353 HOH HOH . G 4 HOH B 28 356 356 HOH HOH . G 4 HOH B 29 357 357 HOH HOH . G 4 HOH B 30 359 359 HOH HOH . G 4 HOH B 31 361 361 HOH HOH . G 4 HOH B 32 363 363 HOH HOH . G 4 HOH B 33 364 364 HOH HOH . G 4 HOH B 34 367 367 HOH HOH . G 4 HOH B 35 368 368 HOH HOH . G 4 HOH B 36 369 369 HOH HOH . G 4 HOH B 37 372 372 HOH HOH . G 4 HOH B 38 379 379 HOH HOH . G 4 HOH B 39 380 380 HOH HOH . G 4 HOH B 40 381 381 HOH HOH . G 4 HOH B 41 382 382 HOH HOH . G 4 HOH B 42 383 383 HOH HOH . G 4 HOH B 43 384 384 HOH HOH . G 4 HOH B 44 386 386 HOH HOH . G 4 HOH B 45 387 387 HOH HOH . G 4 HOH B 46 389 389 HOH HOH . G 4 HOH B 47 390 390 HOH HOH . G 4 HOH B 48 391 391 HOH HOH . G 4 HOH B 49 392 392 HOH HOH . G 4 HOH B 50 393 393 HOH HOH . G 4 HOH B 51 395 395 HOH HOH . G 4 HOH B 52 397 397 HOH HOH . G 4 HOH B 53 400 400 HOH HOH . G 4 HOH B 54 402 402 HOH HOH . G 4 HOH B 55 403 403 HOH HOH . G 4 HOH B 56 404 404 HOH HOH . G 4 HOH B 57 409 409 HOH HOH . G 4 HOH B 58 410 410 HOH HOH . G 4 HOH B 59 411 411 HOH HOH . G 4 HOH B 60 417 417 HOH HOH . G 4 HOH B 61 420 420 HOH HOH . G 4 HOH B 62 427 427 HOH HOH . G 4 HOH B 63 432 432 HOH HOH . G 4 HOH B 64 434 434 HOH HOH . G 4 HOH B 65 435 435 HOH HOH . G 4 HOH B 66 437 437 HOH HOH . G 4 HOH B 67 438 438 HOH HOH . G 4 HOH B 68 440 440 HOH HOH . G 4 HOH B 69 441 441 HOH HOH . G 4 HOH B 70 443 443 HOH HOH . G 4 HOH B 71 445 445 HOH HOH . G 4 HOH B 72 447 447 HOH HOH . G 4 HOH B 73 448 448 HOH HOH . G 4 HOH B 74 449 449 HOH HOH . G 4 HOH B 75 452 452 HOH HOH . G 4 HOH B 76 454 454 HOH HOH . G 4 HOH B 77 458 458 HOH HOH . G 4 HOH B 78 461 461 HOH HOH . G 4 HOH B 79 462 462 HOH HOH . G 4 HOH B 80 464 464 HOH HOH . G 4 HOH B 81 469 469 HOH HOH . G 4 HOH B 82 471 471 HOH HOH . G 4 HOH B 83 472 472 HOH HOH . G 4 HOH B 84 473 473 HOH HOH . G 4 HOH B 85 474 474 HOH HOH . G 4 HOH B 86 478 478 HOH HOH . G 4 HOH B 87 479 479 HOH HOH . G 4 HOH B 88 480 480 HOH HOH . G 4 HOH B 89 481 481 HOH HOH . G 4 HOH B 90 482 482 HOH HOH . G 4 HOH B 91 483 483 HOH HOH . G 4 HOH B 92 484 484 HOH HOH . G 4 HOH B 93 486 486 HOH HOH . G 4 HOH B 94 487 487 HOH HOH . G 4 HOH B 95 490 490 HOH HOH . G 4 HOH B 96 491 491 HOH HOH . G 4 HOH B 97 492 492 HOH HOH . G 4 HOH B 98 493 493 HOH HOH . G 4 HOH B 99 498 498 HOH HOH . G 4 HOH B 100 499 499 HOH HOH . G 4 HOH B 101 501 501 HOH HOH . G 4 HOH B 102 505 505 HOH HOH . G 4 HOH B 103 506 506 HOH HOH . G 4 HOH B 104 507 507 HOH HOH . G 4 HOH B 105 509 509 HOH HOH . G 4 HOH B 106 510 510 HOH HOH . G 4 HOH B 107 512 512 HOH HOH . G 4 HOH B 108 513 513 HOH HOH . G 4 HOH B 109 514 514 HOH HOH . G 4 HOH B 110 515 515 HOH HOH . G 4 HOH B 111 517 517 HOH HOH . G 4 HOH B 112 518 518 HOH HOH . G 4 HOH B 113 523 523 HOH HOH . G 4 HOH B 114 524 524 HOH HOH . G 4 HOH B 115 525 525 HOH HOH . G 4 HOH B 116 526 526 HOH HOH . G 4 HOH B 117 527 527 HOH HOH . G 4 HOH B 118 530 530 HOH HOH . G 4 HOH B 119 531 531 HOH HOH . G 4 HOH B 120 535 535 HOH HOH . G 4 HOH B 121 536 536 HOH HOH . G 4 HOH B 122 538 538 HOH HOH . G 4 HOH B 123 542 542 HOH HOH . G 4 HOH B 124 547 547 HOH HOH . G 4 HOH B 125 551 551 HOH HOH . G 4 HOH B 126 554 554 HOH HOH . G 4 HOH B 127 555 555 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x -19.562 _atom_site.Cartn_y -31.966 _atom_site.Cartn_z 66.674 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 37 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 230 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 337 _model_server_stats.encode_time_ms 18 _model_server_stats.element_count 1 #