data_1YV5
#
_model_server_result.job_id            e7TQk5bCxu2LLD_OIhU0lA 
_model_server_result.datetime_utc      '2024-11-28 17:04:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1yv5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":909}' 
#
_entry.id    1YV5 
#
_exptl.entry_id    1YV5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1YV5 
_cell.length_a            110.946 
_cell.length_b            110.946 
_cell.length_c            70.264 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1YV5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 124 A ASP 117 1_555 B MG MG . A MG 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? 
metalc ? metalc2 A OD2 ASP 124 A ASP 117 1_555 D MG MG . A MG 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.779 ? 
metalc ? metalc3 A OD1 ASP 124 A ASP 117 1_555 D MG MG . A MG 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? 
metalc ? metalc4 A OD2 ASP 128 A ASP 121 1_555 B MG MG . A MG 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? 
metalc ? metalc5 A OD2 ASP 128 A ASP 121 1_555 D MG MG . A MG 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? 
metalc ? metalc6 A OD2 ASP 264 A ASP 257 1_555 C MG MG . A MG 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? 
metalc ? metalc7 G O15 RIS . A RIS 901 1_555 B MG MG . A MG 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? 
metalc ? metalc8 G O12 RIS . A RIS 901 1_555 B MG MG . A MG 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? 
metalc ? metalc9 G O16 RIS . A RIS 901 1_555 C MG MG . A MG 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? 
metalc ? metalc10 G O11 RIS . A RIS 901 1_555 C MG MG . A MG 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? 
metalc ? metalc11 G O15 RIS . A RIS 901 1_555 D MG MG . A MG 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? 
metalc ? metalc12 B MG MG . A MG 907 1_555 D MG MG . A MG 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.765 ? 
metalc ? metalc13 B MG MG . A MG 907 1_555 H O HOH . A HOH 1009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.79 ? 
metalc ? metalc14 B MG MG . A MG 907 1_555 H O HOH . A HOH 1017 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? 
metalc ? metalc15 C MG MG . A MG 908 1_555 H O HOH . A HOH 1045 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? 
metalc ? metalc16 C MG MG . A MG 908 1_555 H O HOH . A HOH 1046 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? 
metalc ? metalc17 C MG MG . A MG 908 1_555 H O HOH . A HOH 1080 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? 
metalc ? metalc18 D MG MG . A MG 909 1_555 H O HOH . A HOH 1012 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? 
metalc ? metalc19 D MG MG . A MG 909 1_555 H O HOH . A HOH 1034 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? 
metalc ? metalc20 D MG MG . A MG 909 1_555 H O HOH . A HOH 1049 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1YV5 
_atom_sites.fract_transf_matrix[1][1]    0.009013 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009013 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014232 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 907 907 MG MG . 
C 2 MG A 1 908 908 MG MG . 
D 2 MG A 1 909 909 MG MG . 
E 3 PO4 A 1 1001 1 PO4 PO4 . 
F 3 PO4 A 1 1002 2 PO4 PO4 . 
G 4 RIS A 1 901 901 RIS RIS . 
H 5 HOH A 1 1003 1 HOH HOH . 
H 5 HOH A 2 1004 2 HOH HOH . 
H 5 HOH A 3 1005 4 HOH HOH . 
H 5 HOH A 4 1006 6 HOH HOH . 
H 5 HOH A 5 1007 7 HOH HOH . 
H 5 HOH A 6 1008 9 HOH HOH . 
H 5 HOH A 7 1009 11 HOH HOH . 
H 5 HOH A 8 1010 13 HOH HOH . 
H 5 HOH A 9 1011 14 HOH HOH . 
H 5 HOH A 10 1012 15 HOH HOH . 
H 5 HOH A 11 1013 16 HOH HOH . 
H 5 HOH A 12 1014 17 HOH HOH . 
H 5 HOH A 13 1015 19 HOH HOH . 
H 5 HOH A 14 1016 21 HOH HOH . 
H 5 HOH A 15 1017 22 HOH HOH . 
H 5 HOH A 16 1018 23 HOH HOH . 
H 5 HOH A 17 1019 24 HOH HOH . 
H 5 HOH A 18 1020 25 HOH HOH . 
H 5 HOH A 19 1021 26 HOH HOH . 
H 5 HOH A 20 1022 27 HOH HOH . 
H 5 HOH A 21 1023 28 HOH HOH . 
H 5 HOH A 22 1024 29 HOH HOH . 
H 5 HOH A 23 1025 30 HOH HOH . 
H 5 HOH A 24 1026 32 HOH HOH . 
H 5 HOH A 25 1027 33 HOH HOH . 
H 5 HOH A 26 1028 34 HOH HOH . 
H 5 HOH A 27 1029 35 HOH HOH . 
H 5 HOH A 28 1030 36 HOH HOH . 
H 5 HOH A 29 1031 38 HOH HOH . 
H 5 HOH A 30 1032 39 HOH HOH . 
H 5 HOH A 31 1033 40 HOH HOH . 
H 5 HOH A 32 1034 41 HOH HOH . 
H 5 HOH A 33 1035 42 HOH HOH . 
H 5 HOH A 34 1036 43 HOH HOH . 
H 5 HOH A 35 1037 44 HOH HOH . 
H 5 HOH A 36 1038 45 HOH HOH . 
H 5 HOH A 37 1039 46 HOH HOH . 
H 5 HOH A 38 1040 47 HOH HOH . 
H 5 HOH A 39 1041 48 HOH HOH . 
H 5 HOH A 40 1042 49 HOH HOH . 
H 5 HOH A 41 1043 51 HOH HOH . 
H 5 HOH A 42 1044 53 HOH HOH . 
H 5 HOH A 43 1045 54 HOH HOH . 
H 5 HOH A 44 1046 55 HOH HOH . 
H 5 HOH A 45 1047 56 HOH HOH . 
H 5 HOH A 46 1048 59 HOH HOH . 
H 5 HOH A 47 1049 60 HOH HOH . 
H 5 HOH A 48 1050 61 HOH HOH . 
H 5 HOH A 49 1051 63 HOH HOH . 
H 5 HOH A 50 1052 64 HOH HOH . 
H 5 HOH A 51 1053 66 HOH HOH . 
H 5 HOH A 52 1054 67 HOH HOH . 
H 5 HOH A 53 1055 68 HOH HOH . 
H 5 HOH A 54 1056 69 HOH HOH . 
H 5 HOH A 55 1057 70 HOH HOH . 
H 5 HOH A 56 1058 71 HOH HOH . 
H 5 HOH A 57 1059 72 HOH HOH . 
H 5 HOH A 58 1060 73 HOH HOH . 
H 5 HOH A 59 1061 75 HOH HOH . 
H 5 HOH A 60 1062 76 HOH HOH . 
H 5 HOH A 61 1063 78 HOH HOH . 
H 5 HOH A 62 1064 80 HOH HOH . 
H 5 HOH A 63 1065 81 HOH HOH . 
H 5 HOH A 64 1066 82 HOH HOH . 
H 5 HOH A 65 1067 84 HOH HOH . 
H 5 HOH A 66 1068 85 HOH HOH . 
H 5 HOH A 67 1069 86 HOH HOH . 
H 5 HOH A 68 1070 87 HOH HOH . 
H 5 HOH A 69 1071 88 HOH HOH . 
H 5 HOH A 70 1072 89 HOH HOH . 
H 5 HOH A 71 1073 91 HOH HOH . 
H 5 HOH A 72 1074 92 HOH HOH . 
H 5 HOH A 73 1075 93 HOH HOH . 
H 5 HOH A 74 1076 95 HOH HOH . 
H 5 HOH A 75 1077 97 HOH HOH . 
H 5 HOH A 76 1078 98 HOH HOH . 
H 5 HOH A 77 1079 99 HOH HOH . 
H 5 HOH A 78 1080 100 HOH HOH . 
H 5 HOH A 79 1081 101 HOH HOH . 
H 5 HOH A 80 1082 103 HOH HOH . 
H 5 HOH A 81 1083 104 HOH HOH . 
H 5 HOH A 82 1084 105 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               19.302 
_atom_site.Cartn_y               32.776 
_atom_site.Cartn_z               -9.057 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        8.76 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           909 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           24 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           529 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           1 
#