data_1YV9
#
_model_server_result.job_id            Ew--6_yzp4cnsn2_NCh9NQ 
_model_server_result.datetime_utc      '2024-11-29 14:02:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1yv9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":3002}' 
#
_entry.id    1YV9 
#
_exptl.entry_id    1YV9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              94.971 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHATE ION' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1YV9 
_cell.length_a            117.628 
_cell.length_b            126.114 
_cell.length_c            112.634 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1YV9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
#
_chem_comp.formula           'O4 P -3' 
_chem_comp.formula_weight    94.971 
_chem_comp.id                PO4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1 PO4 doub 247 n n 
P O2 PO4 sing 248 n n 
P O3 PO4 sing 249 n n 
P O4 PO4 sing 250 n n 
#
_atom_sites.entry_id                     1YV9 
_atom_sites.fract_transf_matrix[1][1]    0.008501 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007929 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008878 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PO4 A 1 3001 3001 PO4 PO4 . 
D 2 PO4 A 1 3002 3002 PO4 PO4 . 
E 2 PO4 B 1 3003 3003 PO4 PO4 . 
F 2 PO4 B 1 3004 3004 PO4 PO4 . 
G 3 HOH A 1 3003 3 HOH TIP . 
G 3 HOH A 2 3004 4 HOH TIP . 
G 3 HOH A 3 3005 7 HOH TIP . 
G 3 HOH A 4 3006 8 HOH TIP . 
G 3 HOH A 5 3007 11 HOH TIP . 
G 3 HOH A 6 3008 12 HOH TIP . 
G 3 HOH A 7 3009 13 HOH TIP . 
G 3 HOH A 8 3010 14 HOH TIP . 
G 3 HOH A 9 3011 15 HOH TIP . 
G 3 HOH A 10 3012 16 HOH TIP . 
G 3 HOH A 11 3013 19 HOH TIP . 
G 3 HOH A 12 3014 20 HOH TIP . 
G 3 HOH A 13 3015 25 HOH TIP . 
G 3 HOH A 14 3016 26 HOH TIP . 
G 3 HOH A 15 3017 27 HOH TIP . 
G 3 HOH A 16 3018 29 HOH TIP . 
G 3 HOH A 17 3019 31 HOH TIP . 
G 3 HOH A 18 3020 34 HOH TIP . 
G 3 HOH A 19 3021 35 HOH TIP . 
G 3 HOH A 20 3022 39 HOH TIP . 
G 3 HOH A 21 3023 40 HOH TIP . 
G 3 HOH A 22 3024 41 HOH TIP . 
G 3 HOH A 23 3025 46 HOH TIP . 
G 3 HOH A 24 3026 48 HOH TIP . 
G 3 HOH A 25 3027 50 HOH TIP . 
G 3 HOH A 26 3028 53 HOH TIP . 
G 3 HOH A 27 3029 54 HOH TIP . 
G 3 HOH A 28 3030 55 HOH TIP . 
G 3 HOH A 29 3031 59 HOH TIP . 
G 3 HOH A 30 3032 60 HOH TIP . 
G 3 HOH A 31 3033 61 HOH TIP . 
G 3 HOH A 32 3034 63 HOH TIP . 
G 3 HOH A 33 3035 64 HOH TIP . 
G 3 HOH A 34 3036 65 HOH TIP . 
G 3 HOH A 35 3037 66 HOH TIP . 
G 3 HOH A 36 3038 69 HOH TIP . 
G 3 HOH A 37 3039 71 HOH TIP . 
G 3 HOH A 38 3040 72 HOH TIP . 
G 3 HOH A 39 3041 74 HOH TIP . 
G 3 HOH A 40 3042 77 HOH TIP . 
G 3 HOH A 41 3043 78 HOH TIP . 
G 3 HOH A 42 3044 83 HOH TIP . 
G 3 HOH A 43 3045 86 HOH TIP . 
G 3 HOH A 44 3046 89 HOH TIP . 
G 3 HOH A 45 3047 91 HOH TIP . 
G 3 HOH A 46 3048 95 HOH TIP . 
G 3 HOH A 47 3049 97 HOH TIP . 
G 3 HOH A 48 3050 102 HOH TIP . 
G 3 HOH A 49 3051 104 HOH TIP . 
G 3 HOH A 50 3052 105 HOH TIP . 
G 3 HOH A 51 3053 106 HOH TIP . 
G 3 HOH A 52 3054 108 HOH TIP . 
G 3 HOH A 53 3055 114 HOH TIP . 
G 3 HOH A 54 3056 119 HOH TIP . 
G 3 HOH A 55 3057 123 HOH TIP . 
G 3 HOH A 56 3058 126 HOH TIP . 
G 3 HOH A 57 3059 128 HOH TIP . 
G 3 HOH A 58 3060 130 HOH TIP . 
G 3 HOH A 59 3061 131 HOH TIP . 
G 3 HOH A 60 3062 132 HOH TIP . 
G 3 HOH A 61 3063 133 HOH TIP . 
G 3 HOH A 62 3064 134 HOH TIP . 
G 3 HOH A 63 3065 137 HOH TIP . 
G 3 HOH A 64 3066 141 HOH TIP . 
G 3 HOH A 65 3067 143 HOH TIP . 
G 3 HOH A 66 3068 144 HOH TIP . 
G 3 HOH A 67 3069 145 HOH TIP . 
G 3 HOH A 68 3070 146 HOH TIP . 
G 3 HOH A 69 3071 148 HOH TIP . 
G 3 HOH A 70 3072 149 HOH TIP . 
G 3 HOH A 71 3073 153 HOH TIP . 
G 3 HOH A 72 3074 154 HOH TIP . 
G 3 HOH A 73 3075 155 HOH TIP . 
G 3 HOH A 74 3076 156 HOH TIP . 
G 3 HOH A 75 3077 157 HOH TIP . 
G 3 HOH A 76 3078 158 HOH TIP . 
G 3 HOH A 77 3079 160 HOH TIP . 
G 3 HOH A 78 3080 163 HOH TIP . 
G 3 HOH A 79 3081 164 HOH TIP . 
G 3 HOH A 80 3082 174 HOH TIP . 
G 3 HOH A 81 3083 175 HOH TIP . 
G 3 HOH A 82 3084 176 HOH TIP . 
G 3 HOH A 83 3085 177 HOH TIP . 
G 3 HOH A 84 3086 179 HOH TIP . 
H 3 HOH B 1 3005 1 HOH TIP . 
H 3 HOH B 2 3006 2 HOH TIP . 
H 3 HOH B 3 3007 5 HOH TIP . 
H 3 HOH B 4 3008 6 HOH TIP . 
H 3 HOH B 5 3009 9 HOH TIP . 
H 3 HOH B 6 3010 10 HOH TIP . 
H 3 HOH B 7 3011 17 HOH TIP . 
H 3 HOH B 8 3012 18 HOH TIP . 
H 3 HOH B 9 3013 21 HOH TIP . 
H 3 HOH B 10 3014 22 HOH TIP . 
H 3 HOH B 11 3015 23 HOH TIP . 
H 3 HOH B 12 3016 24 HOH TIP . 
H 3 HOH B 13 3017 28 HOH TIP . 
H 3 HOH B 14 3018 30 HOH TIP . 
H 3 HOH B 15 3019 32 HOH TIP . 
H 3 HOH B 16 3020 33 HOH TIP . 
H 3 HOH B 17 3021 36 HOH TIP . 
H 3 HOH B 18 3022 37 HOH TIP . 
H 3 HOH B 19 3023 38 HOH TIP . 
H 3 HOH B 20 3024 42 HOH TIP . 
H 3 HOH B 21 3025 43 HOH TIP . 
H 3 HOH B 22 3026 44 HOH TIP . 
H 3 HOH B 23 3027 45 HOH TIP . 
H 3 HOH B 24 3028 47 HOH TIP . 
H 3 HOH B 25 3029 49 HOH TIP . 
H 3 HOH B 26 3030 51 HOH TIP . 
H 3 HOH B 27 3031 52 HOH TIP . 
H 3 HOH B 28 3032 56 HOH TIP . 
H 3 HOH B 29 3033 57 HOH TIP . 
H 3 HOH B 30 3034 58 HOH TIP . 
H 3 HOH B 31 3035 62 HOH TIP . 
H 3 HOH B 32 3036 67 HOH TIP . 
H 3 HOH B 33 3037 68 HOH TIP . 
H 3 HOH B 34 3038 70 HOH TIP . 
H 3 HOH B 35 3039 73 HOH TIP . 
H 3 HOH B 36 3040 75 HOH TIP . 
H 3 HOH B 37 3041 76 HOH TIP . 
H 3 HOH B 38 3042 80 HOH TIP . 
H 3 HOH B 39 3043 81 HOH TIP . 
H 3 HOH B 40 3044 82 HOH TIP . 
H 3 HOH B 41 3045 84 HOH TIP . 
H 3 HOH B 42 3046 85 HOH TIP . 
H 3 HOH B 43 3047 87 HOH TIP . 
H 3 HOH B 44 3048 88 HOH TIP . 
H 3 HOH B 45 3049 90 HOH TIP . 
H 3 HOH B 46 3050 93 HOH TIP . 
H 3 HOH B 47 3051 94 HOH TIP . 
H 3 HOH B 48 3052 96 HOH TIP . 
H 3 HOH B 49 3053 98 HOH TIP . 
H 3 HOH B 50 3054 99 HOH TIP . 
H 3 HOH B 51 3055 100 HOH TIP . 
H 3 HOH B 52 3056 101 HOH TIP . 
H 3 HOH B 53 3057 103 HOH TIP . 
H 3 HOH B 54 3058 107 HOH TIP . 
H 3 HOH B 55 3059 109 HOH TIP . 
H 3 HOH B 56 3060 110 HOH TIP . 
H 3 HOH B 57 3061 111 HOH TIP . 
H 3 HOH B 58 3062 112 HOH TIP . 
H 3 HOH B 59 3063 113 HOH TIP . 
H 3 HOH B 60 3064 115 HOH TIP . 
H 3 HOH B 61 3065 117 HOH TIP . 
H 3 HOH B 62 3066 118 HOH TIP . 
H 3 HOH B 63 3067 120 HOH TIP . 
H 3 HOH B 64 3068 121 HOH TIP . 
H 3 HOH B 65 3069 122 HOH TIP . 
H 3 HOH B 66 3070 127 HOH TIP . 
H 3 HOH B 67 3071 129 HOH TIP . 
H 3 HOH B 68 3072 135 HOH TIP . 
H 3 HOH B 69 3073 136 HOH TIP . 
H 3 HOH B 70 3074 138 HOH TIP . 
H 3 HOH B 71 3075 139 HOH TIP . 
H 3 HOH B 72 3076 140 HOH TIP . 
H 3 HOH B 73 3077 147 HOH TIP . 
H 3 HOH B 74 3078 150 HOH TIP . 
H 3 HOH B 75 3079 151 HOH TIP . 
H 3 HOH B 76 3080 152 HOH TIP . 
H 3 HOH B 77 3081 159 HOH TIP . 
H 3 HOH B 78 3082 161 HOH TIP . 
H 3 HOH B 79 3083 162 HOH TIP . 
H 3 HOH B 80 3084 165 HOH TIP . 
H 3 HOH B 81 3085 166 HOH TIP . 
H 3 HOH B 82 3086 167 HOH TIP . 
H 3 HOH B 83 3087 168 HOH TIP . 
H 3 HOH B 84 3088 169 HOH TIP . 
H 3 HOH B 85 3089 170 HOH TIP . 
H 3 HOH B 86 3090 171 HOH TIP . 
H 3 HOH B 87 3091 172 HOH TIP . 
H 3 HOH B 88 3092 173 HOH TIP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P PO4 . . . D 2 29.187 54.787 41.314 1 11.91 ? P PO4 3002 A 1 
HETATM 2 O O1 PO4 . . . D 2 29.006 53.844 42.49 1 14.91 ? O1 PO4 3002 A 1 
HETATM 3 O O2 PO4 . . . D 2 27.83 55.29 40.841 1 14.55 ? O2 PO4 3002 A 1 
HETATM 4 O O3 PO4 . . . D 2 29.872 54.053 40.172 1 9.8 ? O3 PO4 3002 A 1 
HETATM 5 O O4 PO4 . . . D 2 30.045 55.963 41.738 1 7.25 ? O4 PO4 3002 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           285 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           5 
#