data_1YVG # _model_server_result.job_id 5UvKk931GAad5KKucq0nQw _model_server_result.datetime_utc '2025-03-24 04:08:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1yvg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":469}' # _entry.id 1YVG # _exptl.entry_id 1YVG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1YVG _cell.length_a 106.61 _cell.length_b 177.28 _cell.length_c 54.55 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YVG _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 21 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 1,2 A,B,C 2 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x+1/2,-y+1/2,z -1 0 0 0 -1 0 0 0 1 53.305 88.64 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NE2 _struct_conn.ptnr1_label_comp_id HIS _struct_conn.ptnr1_label_seq_id 236 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id HIS _struct_conn.ptnr1_auth_seq_id 236 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id ZN _struct_conn.ptnr2_label_comp_id ZN _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id ZN _struct_conn.ptnr2_auth_seq_id 469 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.182 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1YVG _atom_sites.fract_transf_matrix[1][1] 0.00938 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005641 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018332 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 469 450 ZN ZN . C 3 HOH A 1 470 1 HOH HOH . C 3 HOH A 2 471 2 HOH HOH . C 3 HOH A 3 472 3 HOH HOH . C 3 HOH A 4 473 4 HOH HOH . C 3 HOH A 5 474 5 HOH HOH . C 3 HOH A 6 475 6 HOH HOH . C 3 HOH A 7 476 7 HOH HOH . C 3 HOH A 8 477 8 HOH HOH . C 3 HOH A 9 478 9 HOH HOH . C 3 HOH A 10 479 10 HOH HOH . C 3 HOH A 11 480 11 HOH HOH . C 3 HOH A 12 481 12 HOH HOH . C 3 HOH A 13 482 13 HOH HOH . C 3 HOH A 14 483 14 HOH HOH . C 3 HOH A 15 484 15 HOH HOH . C 3 HOH A 16 485 16 HOH HOH . C 3 HOH A 17 486 17 HOH HOH . C 3 HOH A 18 487 18 HOH HOH . C 3 HOH A 19 488 19 HOH HOH . C 3 HOH A 20 489 20 HOH HOH . C 3 HOH A 21 490 21 HOH HOH . C 3 HOH A 22 491 22 HOH HOH . C 3 HOH A 23 492 23 HOH HOH . C 3 HOH A 24 493 24 HOH HOH . C 3 HOH A 25 494 25 HOH HOH . C 3 HOH A 26 495 26 HOH HOH . C 3 HOH A 27 496 27 HOH HOH . C 3 HOH A 28 497 28 HOH HOH . C 3 HOH A 29 498 29 HOH HOH . C 3 HOH A 30 499 30 HOH HOH . C 3 HOH A 31 500 32 HOH HOH . C 3 HOH A 32 501 33 HOH HOH . C 3 HOH A 33 502 34 HOH HOH . C 3 HOH A 34 503 35 HOH HOH . C 3 HOH A 35 504 36 HOH HOH . C 3 HOH A 36 505 37 HOH HOH . C 3 HOH A 37 506 38 HOH HOH . C 3 HOH A 38 507 39 HOH HOH . C 3 HOH A 39 508 40 HOH HOH . C 3 HOH A 40 509 41 HOH HOH . C 3 HOH A 41 510 42 HOH HOH . C 3 HOH A 42 511 43 HOH HOH . C 3 HOH A 43 512 44 HOH HOH . C 3 HOH A 44 513 45 HOH HOH . C 3 HOH A 45 514 46 HOH HOH . C 3 HOH A 46 515 47 HOH HOH . C 3 HOH A 47 516 48 HOH HOH . C 3 HOH A 48 517 49 HOH HOH . C 3 HOH A 49 518 50 HOH HOH . C 3 HOH A 50 519 51 HOH HOH . C 3 HOH A 51 520 52 HOH HOH . C 3 HOH A 52 521 53 HOH HOH . C 3 HOH A 53 522 54 HOH HOH . C 3 HOH A 54 523 55 HOH HOH . C 3 HOH A 55 524 56 HOH HOH . C 3 HOH A 56 525 57 HOH HOH . C 3 HOH A 57 526 58 HOH HOH . C 3 HOH A 58 527 59 HOH HOH . C 3 HOH A 59 528 60 HOH HOH . C 3 HOH A 60 529 61 HOH HOH . C 3 HOH A 61 530 62 HOH HOH . C 3 HOH A 62 531 63 HOH HOH . C 3 HOH A 63 532 64 HOH HOH . C 3 HOH A 64 533 65 HOH HOH . C 3 HOH A 65 534 66 HOH HOH . C 3 HOH A 66 535 67 HOH HOH . C 3 HOH A 67 536 68 HOH HOH . C 3 HOH A 68 537 69 HOH HOH . C 3 HOH A 69 538 70 HOH HOH . C 3 HOH A 70 539 71 HOH HOH . C 3 HOH A 71 540 72 HOH HOH . C 3 HOH A 72 541 73 HOH HOH . C 3 HOH A 73 542 74 HOH HOH . C 3 HOH A 74 543 75 HOH HOH . C 3 HOH A 75 544 76 HOH HOH . C 3 HOH A 76 545 77 HOH HOH . C 3 HOH A 77 546 78 HOH HOH . C 3 HOH A 78 547 79 HOH HOH . C 3 HOH A 79 548 80 HOH HOH . C 3 HOH A 80 549 81 HOH HOH . C 3 HOH A 81 550 82 HOH HOH . C 3 HOH A 82 551 83 HOH HOH . C 3 HOH A 83 552 84 HOH HOH . C 3 HOH A 84 553 85 HOH HOH . C 3 HOH A 85 554 86 HOH HOH . C 3 HOH A 86 555 87 HOH HOH . C 3 HOH A 87 556 88 HOH HOH . C 3 HOH A 88 557 89 HOH HOH . C 3 HOH A 89 558 90 HOH HOH . C 3 HOH A 90 559 91 HOH HOH . C 3 HOH A 91 560 92 HOH HOH . C 3 HOH A 92 561 93 HOH HOH . C 3 HOH A 93 562 94 HOH HOH . C 3 HOH A 94 563 95 HOH HOH . C 3 HOH A 95 564 96 HOH HOH . C 3 HOH A 96 565 97 HOH HOH . C 3 HOH A 97 566 98 HOH HOH . C 3 HOH A 98 567 99 HOH HOH . C 3 HOH A 99 568 100 HOH HOH . C 3 HOH A 100 569 101 HOH HOH . C 3 HOH A 101 570 102 HOH HOH . C 3 HOH A 102 571 103 HOH HOH . C 3 HOH A 103 572 104 HOH HOH . C 3 HOH A 104 573 106 HOH HOH . C 3 HOH A 105 574 107 HOH HOH . C 3 HOH A 106 575 108 HOH HOH . C 3 HOH A 107 576 109 HOH HOH . C 3 HOH A 108 577 110 HOH HOH . C 3 HOH A 109 578 111 HOH HOH . C 3 HOH A 110 579 112 HOH HOH . C 3 HOH A 111 580 113 HOH HOH . C 3 HOH A 112 581 114 HOH HOH . C 3 HOH A 113 582 115 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 23.474 _atom_site.Cartn_y 27.917 _atom_site.Cartn_z 6.323 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 49.68 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 469 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #