data_1YVH # _model_server_result.job_id Mgygd0XemFIf8FA6fqbSCA _model_server_result.datetime_utc '2024-12-21 16:58:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1yvh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":352}' # _entry.id 1YVH # _exptl.entry_id 1YVH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1YVH _cell.length_a 122.257 _cell.length_b 122.257 _cell.length_c 55.131 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YVH _symmetry.cell_setting hexagonal _symmetry.Int_Tables_number 168 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 6' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C GLN 9 B GLN 9 1_555 B N PTR 10 B PTR 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale2 B C PTR 10 B PTR 10 1_555 B N SER 11 B SER 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? metalc ? metalc1 A OD1 ASP 207 A ASP 229 1_555 C MG MG . A MG 352 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc2 A OG1 THR 209 A THR 231 1_555 C MG MG . A MG 352 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.741 ? metalc ? metalc3 A OD1 ASN 211 A ASN 233 1_555 C MG MG . A MG 352 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? metalc ? metalc4 A O TYR 213 A TYR 235 1_555 C MG MG . A MG 352 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? metalc ? metalc5 A OE1 GLU 218 A GLU 240 1_555 C MG MG . A MG 352 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? metalc ? metalc6 A OE2 GLU 218 A GLU 240 1_555 C MG MG . A MG 352 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? metalc ? metalc7 C MG MG . A MG 352 1_555 D O HOH . A HOH 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.079 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1YVH _atom_sites.fract_transf_matrix[1][1] 0.008179 _atom_sites.fract_transf_matrix[1][2] 0.004722 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009445 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018139 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG A 1 352 200 MG MG . D 4 HOH A 1 353 1 HOH HOH . D 4 HOH A 2 354 2 HOH HOH . D 4 HOH A 3 355 3 HOH HOH . D 4 HOH A 4 356 4 HOH HOH . D 4 HOH A 5 357 5 HOH HOH . D 4 HOH A 6 358 7 HOH HOH . D 4 HOH A 7 359 8 HOH HOH . D 4 HOH A 8 360 9 HOH HOH . D 4 HOH A 9 361 10 HOH HOH . D 4 HOH A 10 362 11 HOH HOH . D 4 HOH A 11 363 12 HOH HOH . D 4 HOH A 12 364 13 HOH HOH . D 4 HOH A 13 365 14 HOH HOH . D 4 HOH A 14 366 15 HOH HOH . D 4 HOH A 15 367 16 HOH HOH . D 4 HOH A 16 368 17 HOH HOH . D 4 HOH A 17 369 19 HOH HOH . D 4 HOH A 18 370 20 HOH HOH . D 4 HOH A 19 371 21 HOH HOH . D 4 HOH A 20 372 22 HOH HOH . D 4 HOH A 21 373 23 HOH HOH . D 4 HOH A 22 374 24 HOH HOH . D 4 HOH A 23 375 25 HOH HOH . D 4 HOH A 24 376 26 HOH HOH . D 4 HOH A 25 377 27 HOH HOH . D 4 HOH A 26 378 30 HOH HOH . D 4 HOH A 27 379 31 HOH HOH . D 4 HOH A 28 380 32 HOH HOH . D 4 HOH A 29 381 33 HOH HOH . D 4 HOH A 30 382 34 HOH HOH . D 4 HOH A 31 383 35 HOH HOH . D 4 HOH A 32 384 37 HOH HOH . D 4 HOH A 33 385 38 HOH HOH . D 4 HOH A 34 386 39 HOH HOH . D 4 HOH A 35 387 40 HOH HOH . D 4 HOH A 36 388 41 HOH HOH . D 4 HOH A 37 389 42 HOH HOH . D 4 HOH A 38 390 43 HOH HOH . D 4 HOH A 39 391 44 HOH HOH . D 4 HOH A 40 392 45 HOH HOH . D 4 HOH A 41 393 46 HOH HOH . D 4 HOH A 42 394 47 HOH HOH . D 4 HOH A 43 395 48 HOH HOH . D 4 HOH A 44 396 49 HOH HOH . D 4 HOH A 45 397 50 HOH HOH . D 4 HOH A 46 398 51 HOH HOH . D 4 HOH A 47 399 52 HOH HOH . D 4 HOH A 48 400 53 HOH HOH . D 4 HOH A 49 401 54 HOH HOH . D 4 HOH A 50 402 55 HOH HOH . D 4 HOH A 51 403 56 HOH HOH . D 4 HOH A 52 404 57 HOH HOH . D 4 HOH A 53 405 58 HOH HOH . D 4 HOH A 54 406 59 HOH HOH . D 4 HOH A 55 407 60 HOH HOH . D 4 HOH A 56 408 61 HOH HOH . D 4 HOH A 57 409 62 HOH HOH . D 4 HOH A 58 410 63 HOH HOH . D 4 HOH A 59 411 64 HOH HOH . D 4 HOH A 60 412 65 HOH HOH . D 4 HOH A 61 413 66 HOH HOH . D 4 HOH A 62 414 67 HOH HOH . D 4 HOH A 63 415 68 HOH HOH . D 4 HOH A 64 416 69 HOH HOH . D 4 HOH A 65 417 70 HOH HOH . D 4 HOH A 66 418 71 HOH HOH . D 4 HOH A 67 419 72 HOH HOH . D 4 HOH A 68 420 73 HOH HOH . D 4 HOH A 69 421 74 HOH HOH . D 4 HOH A 70 422 75 HOH HOH . D 4 HOH A 71 423 76 HOH HOH . D 4 HOH A 72 424 77 HOH HOH . D 4 HOH A 73 425 78 HOH HOH . D 4 HOH A 74 426 80 HOH HOH . D 4 HOH A 75 427 81 HOH HOH . D 4 HOH A 76 428 82 HOH HOH . D 4 HOH A 77 429 83 HOH HOH . D 4 HOH A 78 430 84 HOH HOH . D 4 HOH A 79 431 85 HOH HOH . D 4 HOH A 80 432 86 HOH HOH . D 4 HOH A 81 433 87 HOH HOH . D 4 HOH A 82 434 88 HOH HOH . D 4 HOH A 83 435 89 HOH HOH . D 4 HOH A 84 436 90 HOH HOH . D 4 HOH A 85 437 91 HOH HOH . D 4 HOH A 86 438 93 HOH HOH . D 4 HOH A 87 439 94 HOH HOH . D 4 HOH A 88 440 96 HOH HOH . D 4 HOH A 89 441 97 HOH HOH . D 4 HOH A 90 442 98 HOH HOH . D 4 HOH A 91 443 99 HOH HOH . D 4 HOH A 92 444 100 HOH HOH . D 4 HOH A 93 445 102 HOH HOH . D 4 HOH A 94 446 103 HOH HOH . D 4 HOH A 95 447 104 HOH HOH . D 4 HOH A 96 448 105 HOH HOH . D 4 HOH A 97 449 106 HOH HOH . D 4 HOH A 98 450 107 HOH HOH . D 4 HOH A 99 451 108 HOH HOH . D 4 HOH A 100 452 109 HOH HOH . D 4 HOH A 101 453 110 HOH HOH . D 4 HOH A 102 454 112 HOH HOH . D 4 HOH A 103 455 113 HOH HOH . D 4 HOH A 104 456 114 HOH HOH . D 4 HOH A 105 457 115 HOH HOH . D 4 HOH A 106 458 116 HOH HOH . D 4 HOH A 107 459 117 HOH HOH . D 4 HOH A 108 460 118 HOH HOH . D 4 HOH A 109 461 119 HOH HOH . D 4 HOH A 110 462 120 HOH HOH . D 4 HOH A 111 463 121 HOH HOH . D 4 HOH A 112 464 122 HOH HOH . D 4 HOH A 113 465 123 HOH HOH . D 4 HOH A 114 466 124 HOH HOH . D 4 HOH A 115 467 125 HOH HOH . D 4 HOH A 116 468 126 HOH HOH . D 4 HOH A 117 469 127 HOH HOH . D 4 HOH A 118 470 128 HOH HOH . D 4 HOH A 119 471 129 HOH HOH . D 4 HOH A 120 472 131 HOH HOH . D 4 HOH A 121 473 132 HOH HOH . D 4 HOH A 122 474 134 HOH HOH . D 4 HOH A 123 475 135 HOH HOH . D 4 HOH A 124 476 136 HOH HOH . D 4 HOH A 125 477 137 HOH HOH . D 4 HOH A 126 478 139 HOH HOH . D 4 HOH A 127 479 140 HOH HOH . D 4 HOH A 128 480 141 HOH HOH . D 4 HOH A 129 481 142 HOH HOH . D 4 HOH A 130 482 143 HOH HOH . D 4 HOH A 131 483 144 HOH HOH . D 4 HOH A 132 484 145 HOH HOH . D 4 HOH A 133 485 146 HOH HOH . D 4 HOH A 134 486 147 HOH HOH . D 4 HOH A 135 487 148 HOH HOH . D 4 HOH A 136 488 149 HOH HOH . D 4 HOH A 137 489 150 HOH HOH . D 4 HOH A 138 490 151 HOH HOH . D 4 HOH A 139 491 152 HOH HOH . D 4 HOH A 140 492 153 HOH HOH . D 4 HOH A 141 493 154 HOH HOH . D 4 HOH A 142 494 155 HOH HOH . D 4 HOH A 143 495 157 HOH HOH . D 4 HOH A 144 496 158 HOH HOH . D 4 HOH A 145 497 159 HOH HOH . D 4 HOH A 146 498 160 HOH HOH . D 4 HOH A 147 499 161 HOH HOH . D 4 HOH A 148 500 162 HOH HOH . D 4 HOH A 149 501 163 HOH HOH . D 4 HOH A 150 502 164 HOH HOH . D 4 HOH A 151 503 165 HOH HOH . D 4 HOH A 152 504 166 HOH HOH . D 4 HOH A 153 505 167 HOH HOH . D 4 HOH A 154 506 168 HOH HOH . D 4 HOH A 155 507 169 HOH HOH . D 4 HOH A 156 508 170 HOH HOH . D 4 HOH A 157 509 171 HOH HOH . D 4 HOH A 158 510 172 HOH HOH . D 4 HOH A 159 511 173 HOH HOH . D 4 HOH A 160 512 174 HOH HOH . D 4 HOH A 161 513 175 HOH HOH . D 4 HOH A 162 514 176 HOH HOH . D 4 HOH A 163 515 178 HOH HOH . D 4 HOH A 164 516 179 HOH HOH . D 4 HOH A 165 517 180 HOH HOH . D 4 HOH A 166 518 181 HOH HOH . D 4 HOH A 167 519 182 HOH HOH . D 4 HOH A 168 520 183 HOH HOH . D 4 HOH A 169 521 184 HOH HOH . D 4 HOH A 170 522 186 HOH HOH . D 4 HOH A 171 523 187 HOH HOH . D 4 HOH A 172 524 188 HOH HOH . E 4 HOH B 1 14 6 HOH HOH . E 4 HOH B 2 15 18 HOH HOH . E 4 HOH B 3 16 28 HOH HOH . E 4 HOH B 4 17 29 HOH HOH . E 4 HOH B 5 18 36 HOH HOH . E 4 HOH B 6 19 79 HOH HOH . E 4 HOH B 7 20 92 HOH HOH . E 4 HOH B 8 21 95 HOH HOH . E 4 HOH B 9 22 101 HOH HOH . E 4 HOH B 10 23 111 HOH HOH . E 4 HOH B 11 24 130 HOH HOH . E 4 HOH B 12 25 133 HOH HOH . E 4 HOH B 13 26 138 HOH HOH . E 4 HOH B 14 27 156 HOH HOH . E 4 HOH B 15 28 177 HOH HOH . E 4 HOH B 16 29 185 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 78.958 _atom_site.Cartn_y 58.16 _atom_site.Cartn_z 2.746 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 27.08 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 352 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #