data_1YVU # _model_server_result.job_id PAnk6wsODvy1YxSVmarujA _model_server_result.datetime_utc '2024-11-26 03:01:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1yvu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":901}' # _entry.id 1YVU # _exptl.entry_id 1YVU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1YVU _cell.length_a 64.15 _cell.length_b 100.679 _cell.length_c 115.217 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YVU _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C CYS 213 A CYS 213 1_555 A N MSE 214 A MSE 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale2 A C MSE 214 A MSE 214 1_555 A N GLU 215 A GLU 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 A C ARG 277 A ARG 277 1_555 A N MSE 278 A MSE 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale4 A C MSE 278 A MSE 278 1_555 A N GLU 279 A GLU 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale5 A C LYS 449 A LYS 449 1_555 A N MSE 450 A MSE 450 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale6 A C MSE 450 A MSE 450 1_555 A N ILE 451 A ILE 451 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale7 A C LEU 664 A LEU 664 1_555 A N MSE 665 A MSE 665 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale8 A C MSE 665 A MSE 665 1_555 A N ASN 666 A ASN 666 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale9 A C LEU 688 A LEU 688 1_555 A N MSE 689 A MSE 689 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale10 A C MSE 689 A MSE 689 1_555 A N LEU 690 A LEU 690 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale11 A C ILE 702 A ILE 702 1_555 A N MSE 703 A MSE 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale12 A C MSE 703 A MSE 703 1_555 A N TYR 704 A TYR 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? metalc ? metalc1 A OD2 ASP 502 A ASP 502 1_555 B CA CA . A CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.871 ? metalc ? metalc2 A OD1 ASP 502 A ASP 502 1_555 B CA CA . A CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.919 ? metalc ? metalc3 A OG SER 504 A SER 504 1_555 B CA CA . A CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.281 ? metalc ? metalc4 A OD2 ASP 683 A ASP 683 1_555 B CA CA . A CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1YVU _atom_sites.fract_transf_matrix[1][1] 0.015588 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009933 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008679 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 901 901 CA CA . C 3 HOH A 1 801 801 HOH HOH . C 3 HOH A 2 802 802 HOH HOH . C 3 HOH A 3 803 803 HOH HOH . C 3 HOH A 4 804 804 HOH HOH . C 3 HOH A 5 805 805 HOH HOH . C 3 HOH A 6 806 806 HOH HOH . C 3 HOH A 7 807 807 HOH HOH . C 3 HOH A 8 808 808 HOH HOH . C 3 HOH A 9 809 809 HOH HOH . C 3 HOH A 10 810 810 HOH HOH . C 3 HOH A 11 811 811 HOH HOH . C 3 HOH A 12 812 812 HOH HOH . C 3 HOH A 13 813 813 HOH HOH . C 3 HOH A 14 814 814 HOH HOH . C 3 HOH A 15 815 815 HOH HOH . C 3 HOH A 16 816 816 HOH HOH . C 3 HOH A 17 817 817 HOH HOH . C 3 HOH A 18 818 818 HOH HOH . C 3 HOH A 19 819 819 HOH HOH . C 3 HOH A 20 820 820 HOH HOH . C 3 HOH A 21 821 821 HOH HOH . C 3 HOH A 22 822 822 HOH HOH . C 3 HOH A 23 823 823 HOH HOH . C 3 HOH A 24 824 824 HOH HOH . C 3 HOH A 25 825 825 HOH HOH . C 3 HOH A 26 826 826 HOH HOH . C 3 HOH A 27 827 827 HOH HOH . C 3 HOH A 28 828 828 HOH HOH . C 3 HOH A 29 829 829 HOH HOH . C 3 HOH A 30 830 830 HOH HOH . C 3 HOH A 31 831 831 HOH HOH . C 3 HOH A 32 832 832 HOH HOH . C 3 HOH A 33 833 833 HOH HOH . C 3 HOH A 34 834 834 HOH HOH . C 3 HOH A 35 835 835 HOH HOH . C 3 HOH A 36 836 836 HOH HOH . C 3 HOH A 37 837 837 HOH HOH . C 3 HOH A 38 838 838 HOH HOH . C 3 HOH A 39 839 839 HOH HOH . C 3 HOH A 40 840 840 HOH HOH . C 3 HOH A 41 841 841 HOH HOH . C 3 HOH A 42 842 842 HOH HOH . C 3 HOH A 43 843 843 HOH HOH . C 3 HOH A 44 844 844 HOH HOH . C 3 HOH A 45 845 845 HOH HOH . C 3 HOH A 46 846 846 HOH HOH . C 3 HOH A 47 847 847 HOH HOH . C 3 HOH A 48 848 848 HOH HOH . C 3 HOH A 49 849 849 HOH HOH . C 3 HOH A 50 850 850 HOH HOH . C 3 HOH A 51 851 851 HOH HOH . C 3 HOH A 52 852 852 HOH HOH . C 3 HOH A 53 853 853 HOH HOH . C 3 HOH A 54 854 854 HOH HOH . C 3 HOH A 55 855 855 HOH HOH . C 3 HOH A 56 856 856 HOH HOH . C 3 HOH A 57 857 857 HOH HOH . C 3 HOH A 58 858 858 HOH HOH . C 3 HOH A 59 859 859 HOH HOH . C 3 HOH A 60 860 860 HOH HOH . C 3 HOH A 61 861 861 HOH HOH . C 3 HOH A 62 862 862 HOH HOH . C 3 HOH A 63 863 863 HOH HOH . C 3 HOH A 64 864 864 HOH HOH . C 3 HOH A 65 865 865 HOH HOH . C 3 HOH A 66 866 866 HOH HOH . C 3 HOH A 67 867 867 HOH HOH . C 3 HOH A 68 868 868 HOH HOH . C 3 HOH A 69 869 869 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 46.039 _atom_site.Cartn_y 61.938 _atom_site.Cartn_z 18.183 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 14.78 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 901 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #