data_1YW1 # _model_server_result.job_id 9scpzSI1BOS8OaTUsuYM3A _model_server_result.datetime_utc '2024-11-05 00:53:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1yw1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":2605}' # _entry.id 1YW1 # _exptl.entry_id 1YW1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description alpha-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1YW1 _cell.length_a 86.254 _cell.length_b 86.254 _cell.length_c 194.64 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YW1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_465 y-1,x+1,-z 0 1 0 1 0 0 0 0 -1 -86.254 86.254 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ALA 11 A ALA 11 1_555 A N MSE 12 A MSE 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? covale ? covale2 A C MSE 12 A MSE 12 1_555 A N ILE 13 A ILE 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale3 A C TYR 39 A TYR 39 1_555 A N MSE 40 A MSE 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale4 A C MSE 40 A MSE 40 1_555 A N LYS 41 A LYS 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale5 A C LEU 110 A LEU 110 1_555 A N MSE 111 A MSE 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale6 A C MSE 111 A MSE 111 1_555 A N SER 112 A SER 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale7 A C GLU 355 A GLU 355 1_555 A N MSE 356 A MSE 356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale8 A C MSE 356 A MSE 356 1_555 A N ALA 357 A ALA 357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id GLC _chem_comp.mon_nstd_flag . _chem_comp.name alpha-D-glucopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms alpha-D-glucose;D-glucose;glucose # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version GLC DGlcpa 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 GLC a-D-glucopyranose 'COMMON NAME' GMML 1 GLC a-D-Glcp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 GLC Glc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1YW1 _atom_sites.fract_transf_matrix[1][1] 0.011594 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011594 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005138 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GLC A 1 2605 2605 GLC GLC . C 3 FMN A 1 2606 404 FMN FMN . D 4 HOH A 1 2607 1 HOH HOH . D 4 HOH A 2 2608 2 HOH HOH . D 4 HOH A 3 2609 3 HOH HOH . D 4 HOH A 4 2610 4 HOH HOH . D 4 HOH A 5 2611 5 HOH HOH . D 4 HOH A 6 2612 6 HOH HOH . D 4 HOH A 7 2613 7 HOH HOH . D 4 HOH A 8 2614 8 HOH HOH . D 4 HOH A 9 2615 9 HOH HOH . D 4 HOH A 10 2616 10 HOH HOH . D 4 HOH A 11 2617 11 HOH HOH . D 4 HOH A 12 2618 12 HOH HOH . D 4 HOH A 13 2619 13 HOH HOH . D 4 HOH A 14 2620 14 HOH HOH . D 4 HOH A 15 2621 15 HOH HOH . D 4 HOH A 16 2622 16 HOH HOH . D 4 HOH A 17 2623 17 HOH HOH . D 4 HOH A 18 2624 18 HOH HOH . D 4 HOH A 19 2625 19 HOH HOH . D 4 HOH A 20 2626 20 HOH HOH . D 4 HOH A 21 2627 21 HOH HOH . D 4 HOH A 22 2628 22 HOH HOH . D 4 HOH A 23 2629 23 HOH HOH . D 4 HOH A 24 2630 24 HOH HOH . D 4 HOH A 25 2631 25 HOH HOH . D 4 HOH A 26 2632 26 HOH HOH . D 4 HOH A 27 2633 27 HOH HOH . D 4 HOH A 28 2634 28 HOH HOH . D 4 HOH A 29 2635 29 HOH HOH . D 4 HOH A 30 2636 30 HOH HOH . D 4 HOH A 31 2637 31 HOH HOH . D 4 HOH A 32 2638 32 HOH HOH . D 4 HOH A 33 2639 33 HOH HOH . D 4 HOH A 34 2640 34 HOH HOH . D 4 HOH A 35 2641 35 HOH HOH . D 4 HOH A 36 2642 36 HOH HOH . D 4 HOH A 37 2643 37 HOH HOH . D 4 HOH A 38 2644 38 HOH HOH . D 4 HOH A 39 2645 39 HOH HOH . D 4 HOH A 40 2646 40 HOH HOH . D 4 HOH A 41 2647 41 HOH HOH . D 4 HOH A 42 2648 42 HOH HOH . D 4 HOH A 43 2649 43 HOH HOH . D 4 HOH A 44 2650 44 HOH HOH . D 4 HOH A 45 2651 45 HOH HOH . D 4 HOH A 46 2652 46 HOH HOH . D 4 HOH A 47 2653 47 HOH HOH . D 4 HOH A 48 2654 48 HOH HOH . D 4 HOH A 49 2655 49 HOH HOH . D 4 HOH A 50 2656 50 HOH HOH . D 4 HOH A 51 2657 51 HOH HOH . D 4 HOH A 52 2658 52 HOH HOH . D 4 HOH A 53 2659 53 HOH HOH . D 4 HOH A 54 2660 54 HOH HOH . D 4 HOH A 55 2661 55 HOH HOH . D 4 HOH A 56 2662 56 HOH HOH . D 4 HOH A 57 2663 57 HOH HOH . D 4 HOH A 58 2664 58 HOH HOH . D 4 HOH A 59 2665 59 HOH HOH . D 4 HOH A 60 2666 60 HOH HOH . D 4 HOH A 61 2667 61 HOH HOH . D 4 HOH A 62 2668 62 HOH HOH . D 4 HOH A 63 2669 63 HOH HOH . D 4 HOH A 64 2670 64 HOH HOH . D 4 HOH A 65 2671 65 HOH HOH . D 4 HOH A 66 2672 66 HOH HOH . D 4 HOH A 67 2673 67 HOH HOH . D 4 HOH A 68 2674 68 HOH HOH . D 4 HOH A 69 2675 69 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GLC . . . B 2 -11.781 68.999 17.357 1 57.75 ? C1 GLC 2605 A 1 HETATM 2 C C2 GLC . . . B 2 -10.981 67.924 18.128 1 54.76 ? C2 GLC 2605 A 1 HETATM 3 C C3 GLC . . . B 2 -11.607 66.532 18.155 1 59.69 ? C3 GLC 2605 A 1 HETATM 4 C C4 GLC . . . B 2 -13.099 66.687 18.441 1 60.36 ? C4 GLC 2605 A 1 HETATM 5 C C5 GLC . . . B 2 -13.778 67.541 17.368 1 59.22 ? C5 GLC 2605 A 1 HETATM 6 C C6 GLC . . . B 2 -15.183 68.046 17.693 1 62.58 ? C6 GLC 2605 A 1 HETATM 7 O O1 GLC . . . B 2 -11.139 69.729 16.33 1 51.6 ? O1 GLC 2605 A 1 HETATM 8 O O2 GLC . . . B 2 -9.592 67.815 17.939 1 47.9 ? O2 GLC 2605 A 1 HETATM 9 O O3 GLC . . . B 2 -10.967 65.625 19.041 1 54.32 ? O3 GLC 2605 A 1 HETATM 10 O O4 GLC . . . B 2 -13.613 65.381 18.321 1 69.1 ? O4 GLC 2605 A 1 HETATM 11 O O5 GLC . . . B 2 -13.046 68.628 16.824 1 56.48 ? O5 GLC 2605 A 1 HETATM 12 O O6 GLC . . . B 2 -15.39 69.207 16.908 1 58.83 ? O6 GLC 2605 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 12 #