data_1YW1
#
_model_server_result.job_id            ZWCBGmoHdils4IQ89jCMLA 
_model_server_result.datetime_utc      '2024-12-18 22:45:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1yw1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":2606}' 
#
_entry.id    1YW1 
#
_exptl.entry_id    1YW1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              456.344 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN MONONUCLEOTIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1YW1 
_cell.length_a            86.254 
_cell.length_b            86.254 
_cell.length_c            194.64 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1YW1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 7_465 y-1,x+1,-z 0 1 0 1 0 0 0 0 -1 -86.254 86.254 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ALA 11 A ALA 11 1_555 A N MSE 12 A MSE 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? 
covale ? covale2 A C MSE 12 A MSE 12 1_555 A N ILE 13 A ILE 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale3 A C TYR 39 A TYR 39 1_555 A N MSE 40 A MSE 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale4 A C MSE 40 A MSE 40 1_555 A N LYS 41 A LYS 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale5 A C LEU 110 A LEU 110 1_555 A N MSE 111 A MSE 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale6 A C MSE 111 A MSE 111 1_555 A N SER 112 A SER 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale7 A C GLU 355 A GLU 355 1_555 A N MSE 356 A MSE 356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale8 A C MSE 356 A MSE 356 1_555 A N ALA 357 A ALA 357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
#
_chem_comp.formula           'C17 H21 N4 O9 P' 
_chem_comp.formula_weight    456.344 
_chem_comp.id                FMN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN MONONUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'RIBOFLAVIN MONOPHOSPHATE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 FMN sing 70 n n 
N1 C10 FMN doub 71 n n 
C2 O2 FMN doub 72 n n 
C2 N3 FMN sing 73 n n 
N3 C4 FMN sing 74 n n 
N3 HN3 FMN sing 75 n n 
C4 O4 FMN doub 76 n n 
C4 C4A FMN sing 77 n n 
C4A N5 FMN doub 78 n n 
C4A C10 FMN sing 79 n n 
N5 C5A FMN sing 80 n n 
C5A C6 FMN doub 81 n y 
C5A C9A FMN sing 82 n y 
C6 C7 FMN sing 83 n y 
C6 H6 FMN sing 84 n n 
C7 C7M FMN sing 85 n n 
C7 C8 FMN doub 86 n y 
C7M HM71 FMN sing 87 n n 
C7M HM72 FMN sing 88 n n 
C7M HM73 FMN sing 89 n n 
C8 C8M FMN sing 90 n n 
C8 C9 FMN sing 91 n y 
C8M HM81 FMN sing 92 n n 
C8M HM82 FMN sing 93 n n 
C8M HM83 FMN sing 94 n n 
C9 C9A FMN doub 95 n y 
C9 H9 FMN sing 96 n n 
C9A N10 FMN sing 97 n n 
N10 C10 FMN sing 98 n n 
N10 C1' FMN sing 99 n n 
C1' C2' FMN sing 100 n n 
C1' "H1'1" FMN sing 101 n n 
C1' "H1'2" FMN sing 102 n n 
C2' O2' FMN sing 103 n n 
C2' C3' FMN sing 104 n n 
C2' H2' FMN sing 105 n n 
O2' HO2' FMN sing 106 n n 
C3' O3' FMN sing 107 n n 
C3' C4' FMN sing 108 n n 
C3' H3' FMN sing 109 n n 
O3' HO3' FMN sing 110 n n 
C4' O4' FMN sing 111 n n 
C4' C5' FMN sing 112 n n 
C4' H4' FMN sing 113 n n 
O4' HO4' FMN sing 114 n n 
C5' O5' FMN sing 115 n n 
C5' "H5'1" FMN sing 116 n n 
C5' "H5'2" FMN sing 117 n n 
O5' P FMN sing 118 n n 
P O1P FMN doub 119 n n 
P O2P FMN sing 120 n n 
P O3P FMN sing 121 n n 
O2P HOP2 FMN sing 122 n n 
O3P HOP3 FMN sing 123 n n 
#
_atom_sites.entry_id                     1YW1 
_atom_sites.fract_transf_matrix[1][1]    0.011594 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011594 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005138 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GLC A 1 2605 2605 GLC GLC . 
C 3 FMN A 1 2606 404 FMN FMN . 
D 4 HOH A 1 2607 1 HOH HOH . 
D 4 HOH A 2 2608 2 HOH HOH . 
D 4 HOH A 3 2609 3 HOH HOH . 
D 4 HOH A 4 2610 4 HOH HOH . 
D 4 HOH A 5 2611 5 HOH HOH . 
D 4 HOH A 6 2612 6 HOH HOH . 
D 4 HOH A 7 2613 7 HOH HOH . 
D 4 HOH A 8 2614 8 HOH HOH . 
D 4 HOH A 9 2615 9 HOH HOH . 
D 4 HOH A 10 2616 10 HOH HOH . 
D 4 HOH A 11 2617 11 HOH HOH . 
D 4 HOH A 12 2618 12 HOH HOH . 
D 4 HOH A 13 2619 13 HOH HOH . 
D 4 HOH A 14 2620 14 HOH HOH . 
D 4 HOH A 15 2621 15 HOH HOH . 
D 4 HOH A 16 2622 16 HOH HOH . 
D 4 HOH A 17 2623 17 HOH HOH . 
D 4 HOH A 18 2624 18 HOH HOH . 
D 4 HOH A 19 2625 19 HOH HOH . 
D 4 HOH A 20 2626 20 HOH HOH . 
D 4 HOH A 21 2627 21 HOH HOH . 
D 4 HOH A 22 2628 22 HOH HOH . 
D 4 HOH A 23 2629 23 HOH HOH . 
D 4 HOH A 24 2630 24 HOH HOH . 
D 4 HOH A 25 2631 25 HOH HOH . 
D 4 HOH A 26 2632 26 HOH HOH . 
D 4 HOH A 27 2633 27 HOH HOH . 
D 4 HOH A 28 2634 28 HOH HOH . 
D 4 HOH A 29 2635 29 HOH HOH . 
D 4 HOH A 30 2636 30 HOH HOH . 
D 4 HOH A 31 2637 31 HOH HOH . 
D 4 HOH A 32 2638 32 HOH HOH . 
D 4 HOH A 33 2639 33 HOH HOH . 
D 4 HOH A 34 2640 34 HOH HOH . 
D 4 HOH A 35 2641 35 HOH HOH . 
D 4 HOH A 36 2642 36 HOH HOH . 
D 4 HOH A 37 2643 37 HOH HOH . 
D 4 HOH A 38 2644 38 HOH HOH . 
D 4 HOH A 39 2645 39 HOH HOH . 
D 4 HOH A 40 2646 40 HOH HOH . 
D 4 HOH A 41 2647 41 HOH HOH . 
D 4 HOH A 42 2648 42 HOH HOH . 
D 4 HOH A 43 2649 43 HOH HOH . 
D 4 HOH A 44 2650 44 HOH HOH . 
D 4 HOH A 45 2651 45 HOH HOH . 
D 4 HOH A 46 2652 46 HOH HOH . 
D 4 HOH A 47 2653 47 HOH HOH . 
D 4 HOH A 48 2654 48 HOH HOH . 
D 4 HOH A 49 2655 49 HOH HOH . 
D 4 HOH A 50 2656 50 HOH HOH . 
D 4 HOH A 51 2657 51 HOH HOH . 
D 4 HOH A 52 2658 52 HOH HOH . 
D 4 HOH A 53 2659 53 HOH HOH . 
D 4 HOH A 54 2660 54 HOH HOH . 
D 4 HOH A 55 2661 55 HOH HOH . 
D 4 HOH A 56 2662 56 HOH HOH . 
D 4 HOH A 57 2663 57 HOH HOH . 
D 4 HOH A 58 2664 58 HOH HOH . 
D 4 HOH A 59 2665 59 HOH HOH . 
D 4 HOH A 60 2666 60 HOH HOH . 
D 4 HOH A 61 2667 61 HOH HOH . 
D 4 HOH A 62 2668 62 HOH HOH . 
D 4 HOH A 63 2669 63 HOH HOH . 
D 4 HOH A 64 2670 64 HOH HOH . 
D 4 HOH A 65 2671 65 HOH HOH . 
D 4 HOH A 66 2672 66 HOH HOH . 
D 4 HOH A 67 2673 67 HOH HOH . 
D 4 HOH A 68 2674 68 HOH HOH . 
D 4 HOH A 69 2675 69 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 FMN . . . C 3 -11.044 63.641 16.099 1 67.89 ? N1 FMN 2606 A 1 
HETATM 2 C C2 FMN . . . C 3 -11.87 64.404 15.293 1 66.23 ? C2 FMN 2606 A 1 
HETATM 3 O O2 FMN . . . C 3 -13.064 64.149 15.118 1 67.59 ? O2 FMN 2606 A 1 
HETATM 4 N N3 FMN . . . C 3 -11.36 65.502 14.645 1 62.88 ? N3 FMN 2606 A 1 
HETATM 5 C C4 FMN . . . C 3 -10.037 65.834 14.795 1 62.06 ? C4 FMN 2606 A 1 
HETATM 6 O O4 FMN . . . C 3 -9.514 66.749 14.166 1 62.1 ? O4 FMN 2606 A 1 
HETATM 7 C C4A FMN . . . C 3 -9.203 65.075 15.593 1 67.27 ? C4A FMN 2606 A 1 
HETATM 8 N N5 FMN . . . C 3 -7.878 65.45 15.71 1 68.3 ? N5 FMN 2606 A 1 
HETATM 9 C C5A FMN . . . C 3 -7.013 64.723 16.518 1 68.88 ? C5A FMN 2606 A 1 
HETATM 10 C C6 FMN . . . C 3 -5.664 65.11 16.636 1 68.51 ? C6 FMN 2606 A 1 
HETATM 11 C C7 FMN . . . C 3 -4.732 64.427 17.429 1 65.48 ? C7 FMN 2606 A 1 
HETATM 12 C C7M FMN . . . C 3 -3.354 65.07 17.465 1 60.41 ? C7M FMN 2606 A 1 
HETATM 13 C C8 FMN . . . C 3 -5.232 63.297 18.122 1 63.97 ? C8 FMN 2606 A 1 
HETATM 14 C C8M FMN . . . C 3 -4.473 62.564 19.184 1 61.68 ? C8M FMN 2606 A 1 
HETATM 15 C C9 FMN . . . C 3 -6.57 62.891 18.012 1 65.13 ? C9 FMN 2606 A 1 
HETATM 16 C C9A FMN . . . C 3 -7.475 63.602 17.212 1 66.15 ? C9A FMN 2606 A 1 
HETATM 17 N N10 FMN . . . C 3 -8.802 63.254 17.057 1 67.29 ? N10 FMN 2606 A 1 
HETATM 18 C C10 FMN . . . C 3 -9.699 63.965 16.264 1 70.22 ? C10 FMN 2606 A 1 
HETATM 19 C C1' FMN . . . C 3 -9.336 62.237 18.003 1 74.05 ? C1' FMN 2606 A 1 
HETATM 20 C C2' FMN . . . C 3 -9.333 60.822 17.431 1 76.22 ? C2' FMN 2606 A 1 
HETATM 21 O O2' FMN . . . C 3 -10.498 60.778 16.6 1 70.35 ? O2' FMN 2606 A 1 
HETATM 22 C C3' FMN . . . C 3 -9.139 59.899 18.668 1 79.5 ? C3' FMN 2606 A 1 
HETATM 23 O O3' FMN . . . C 3 -7.865 60.145 19.266 1 72.07 ? O3' FMN 2606 A 1 
HETATM 24 C C4' FMN . . . C 3 -9.288 58.366 18.555 1 81.21 ? C4' FMN 2606 A 1 
HETATM 25 O O4' FMN . . . C 3 -8.445 57.836 17.548 1 85.79 ? O4' FMN 2606 A 1 
HETATM 26 C C5' FMN . . . C 3 -10.705 57.803 18.384 1 79.88 ? C5' FMN 2606 A 1 
HETATM 27 O O5' FMN . . . C 3 -10.845 56.971 17.244 1 78.16 ? O5' FMN 2606 A 1 
HETATM 28 P P FMN . . . C 3 -10.759 55.362 17.291 1 73.1 ? P FMN 2606 A 1 
HETATM 29 O O1P FMN . . . C 3 -11.087 54.77 15.954 1 75.22 ? O1P FMN 2606 A 1 
HETATM 30 O O2P FMN . . . C 3 -9.344 54.903 17.51 1 69.41 ? O2P FMN 2606 A 1 
HETATM 31 O O3P FMN . . . C 3 -11.829 54.885 18.245 1 73.73 ? O3P FMN 2606 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           430 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           31 
#