data_1YW8
#
_model_server_result.job_id            WyicpJ6yDSL0qijCT39DRQ 
_model_server_result.datetime_utc      '2024-10-18 16:20:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1yw8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":481}' 
#
_entry.id    1YW8 
#
_exptl.entry_id    1YW8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              54.938 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MANGANESE (II) ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1YW8 
_cell.length_a            89.527 
_cell.length_b            99.225 
_cell.length_c            101.191 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1YW8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 119 A CYS 228 1_555 A SG CYS 339 A CYS 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
metalc ? metalc1 B MN MN . A MN 480 1_555 A OD2 ASP 153 A ASP 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? 
metalc ? metalc2 B MN MN . A MN 480 1_555 A OE2 GLU 350 A GLU 459 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? 
metalc ? metalc3 B MN MN . A MN 480 1_555 A OD1 ASP 142 A ASP 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? 
metalc ? metalc4 B MN MN . A MN 480 1_555 A OD2 ASP 142 A ASP 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? 
metalc ? metalc5 C MN MN . A MN 481 1_555 A OE1 GLU 255 A GLU 364 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? 
metalc ? metalc6 C MN MN . A MN 481 1_555 A OE1 GLU 350 A GLU 459 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? 
metalc ? metalc7 C MN MN . A MN 481 1_555 A NE2 HIS 222 A HIS 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? 
metalc ? metalc8 C MN MN . A MN 481 1_555 D O12 A75 . A A75 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? 
metalc ? metalc9 C MN MN . A MN 481 1_555 A OD1 ASP 153 A ASP 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? 
#
_chem_comp.formula           'Mn 2' 
_chem_comp.formula_weight    54.938 
_chem_comp.id                MN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MANGANESE (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1YW8 
_atom_sites.fract_transf_matrix[1][1]    0.01117 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010078 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009882 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MN A 1 480 480 MN MN . 
C 2 MN A 1 481 481 MN MN . 
D 3 A75 A 1 104 1 A75 A75 . 
E 4 HOH A 1 1 1 HOH TIP . 
E 4 HOH A 2 2 2 HOH TIP . 
E 4 HOH A 3 3 3 HOH TIP . 
E 4 HOH A 4 4 4 HOH TIP . 
E 4 HOH A 5 5 5 HOH TIP . 
E 4 HOH A 6 6 6 HOH TIP . 
E 4 HOH A 7 7 7 HOH TIP . 
E 4 HOH A 8 8 8 HOH TIP . 
E 4 HOH A 9 9 9 HOH TIP . 
E 4 HOH A 10 10 10 HOH TIP . 
E 4 HOH A 11 11 11 HOH TIP . 
E 4 HOH A 12 12 12 HOH TIP . 
E 4 HOH A 13 13 13 HOH TIP . 
E 4 HOH A 14 14 14 HOH TIP . 
E 4 HOH A 15 15 15 HOH TIP . 
E 4 HOH A 16 16 16 HOH TIP . 
E 4 HOH A 17 17 17 HOH TIP . 
E 4 HOH A 18 18 18 HOH TIP . 
E 4 HOH A 19 19 19 HOH TIP . 
E 4 HOH A 20 20 20 HOH TIP . 
E 4 HOH A 21 21 21 HOH TIP . 
E 4 HOH A 22 22 22 HOH TIP . 
E 4 HOH A 23 23 23 HOH TIP . 
E 4 HOH A 24 24 24 HOH TIP . 
E 4 HOH A 25 25 25 HOH TIP . 
E 4 HOH A 26 26 26 HOH TIP . 
E 4 HOH A 27 27 27 HOH TIP . 
E 4 HOH A 28 28 28 HOH TIP . 
E 4 HOH A 29 29 29 HOH TIP . 
E 4 HOH A 30 30 30 HOH TIP . 
E 4 HOH A 31 31 31 HOH TIP . 
E 4 HOH A 32 32 32 HOH TIP . 
E 4 HOH A 33 33 33 HOH TIP . 
E 4 HOH A 34 34 34 HOH TIP . 
E 4 HOH A 35 35 35 HOH TIP . 
E 4 HOH A 36 36 36 HOH TIP . 
E 4 HOH A 37 37 37 HOH TIP . 
E 4 HOH A 38 38 38 HOH TIP . 
E 4 HOH A 39 39 39 HOH TIP . 
E 4 HOH A 40 40 40 HOH TIP . 
E 4 HOH A 41 41 41 HOH TIP . 
E 4 HOH A 42 42 42 HOH TIP . 
E 4 HOH A 43 43 43 HOH TIP . 
E 4 HOH A 44 44 44 HOH TIP . 
E 4 HOH A 45 45 45 HOH TIP . 
E 4 HOH A 46 46 46 HOH TIP . 
E 4 HOH A 47 47 47 HOH TIP . 
E 4 HOH A 48 48 48 HOH TIP . 
E 4 HOH A 49 49 49 HOH TIP . 
E 4 HOH A 50 50 50 HOH TIP . 
E 4 HOH A 51 51 51 HOH TIP . 
E 4 HOH A 52 52 52 HOH TIP . 
E 4 HOH A 53 53 53 HOH TIP . 
E 4 HOH A 54 54 54 HOH TIP . 
E 4 HOH A 55 55 55 HOH TIP . 
E 4 HOH A 56 56 56 HOH TIP . 
E 4 HOH A 57 57 57 HOH TIP . 
E 4 HOH A 58 58 58 HOH TIP . 
E 4 HOH A 59 59 59 HOH TIP . 
E 4 HOH A 60 60 60 HOH TIP . 
E 4 HOH A 61 61 61 HOH TIP . 
E 4 HOH A 62 62 62 HOH TIP . 
E 4 HOH A 63 63 63 HOH TIP . 
E 4 HOH A 64 64 64 HOH TIP . 
E 4 HOH A 65 65 65 HOH TIP . 
E 4 HOH A 66 66 66 HOH TIP . 
E 4 HOH A 67 67 67 HOH TIP . 
E 4 HOH A 68 68 68 HOH TIP . 
E 4 HOH A 69 69 69 HOH TIP . 
E 4 HOH A 70 70 70 HOH TIP . 
E 4 HOH A 71 71 71 HOH TIP . 
E 4 HOH A 72 72 72 HOH TIP . 
E 4 HOH A 73 73 73 HOH TIP . 
E 4 HOH A 74 74 74 HOH TIP . 
E 4 HOH A 75 75 75 HOH TIP . 
E 4 HOH A 76 76 76 HOH TIP . 
E 4 HOH A 77 77 77 HOH TIP . 
E 4 HOH A 78 78 78 HOH TIP . 
E 4 HOH A 79 79 79 HOH TIP . 
E 4 HOH A 80 80 80 HOH TIP . 
E 4 HOH A 81 81 81 HOH TIP . 
E 4 HOH A 82 82 82 HOH TIP . 
E 4 HOH A 83 83 83 HOH TIP . 
E 4 HOH A 84 84 84 HOH TIP . 
E 4 HOH A 85 85 85 HOH TIP . 
E 4 HOH A 86 86 86 HOH TIP . 
E 4 HOH A 87 87 87 HOH TIP . 
E 4 HOH A 88 88 88 HOH TIP . 
E 4 HOH A 89 89 89 HOH TIP . 
E 4 HOH A 90 90 90 HOH TIP . 
E 4 HOH A 91 91 91 HOH TIP . 
E 4 HOH A 92 92 92 HOH TIP . 
E 4 HOH A 93 93 93 HOH TIP . 
E 4 HOH A 94 94 94 HOH TIP . 
E 4 HOH A 95 95 95 HOH TIP . 
E 4 HOH A 96 96 96 HOH TIP . 
E 4 HOH A 97 97 97 HOH TIP . 
E 4 HOH A 98 98 98 HOH TIP . 
E 4 HOH A 99 99 99 HOH TIP . 
E 4 HOH A 100 100 100 HOH TIP . 
E 4 HOH A 101 101 101 HOH TIP . 
E 4 HOH A 102 102 102 HOH TIP . 
E 4 HOH A 103 103 103 HOH TIP . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MN 
_atom_site.label_atom_id         MN 
_atom_site.label_comp_id         MN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               18.126 
_atom_site.Cartn_y               25.442 
_atom_site.Cartn_z               16.619 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        19.27 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MN 
_atom_site.auth_comp_id          MN 
_atom_site.auth_seq_id           481 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              37 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           311 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#