data_1YWM
#
_model_server_result.job_id            8GlWf6UFC4RNCmUF-SO3RA 
_model_server_result.datetime_utc      '2024-10-11 00:22:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1ywm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":1001}' 
#
_entry.id    1YWM 
#
_exptl.entry_id    1YWM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              154.251 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2R,3S)-1,4-DIMERCAPTOBUTANE-2,3-DIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1YWM 
_cell.length_a            56.464 
_cell.length_b            56.464 
_cell.length_c            271.617 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1YWM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C4 H10 O2 S2' 
_chem_comp.formula_weight    154.251 
_chem_comp.id                DTU 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2R,3S)-1,4-DIMERCAPTOBUTANE-2,3-DIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S1 C1 DTU sing 70 n n 
S1 H1 DTU sing 71 n n 
C1 C2 DTU sing 72 n n 
C1 H1C1 DTU sing 73 n n 
C1 H1C2 DTU sing 74 n n 
C2 O2 DTU sing 75 n n 
C2 C3 DTU sing 76 n n 
C2 H2 DTU sing 77 n n 
O2 HA DTU sing 78 n n 
C3 O3 DTU sing 79 n n 
C3 C4 DTU sing 80 n n 
C3 H3 DTU sing 81 n n 
O3 HB DTU sing 82 n n 
C4 S4 DTU sing 83 n n 
C4 H4C1 DTU sing 84 n n 
C4 H4C2 DTU sing 85 n n 
S4 H4 DTU sing 86 n n 
#
_atom_sites.entry_id                     1YWM 
_atom_sites.fract_transf_matrix[1][1]    0.01771 
_atom_sites.fract_transf_matrix[1][2]    0.010225 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.02045 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003682 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 DTU A 1 1001 1001 DTU DTT . 
C 3 GOL A 1 2001 2001 GOL GOL . 
D 3 GOL A 1 2002 2002 GOL GOL . 
E 4 HOH A 1 300 300 HOH HOH . 
E 4 HOH A 2 301 301 HOH HOH . 
E 4 HOH A 3 302 302 HOH HOH . 
E 4 HOH A 4 303 303 HOH HOH . 
E 4 HOH A 5 304 304 HOH HOH . 
E 4 HOH A 6 305 305 HOH HOH . 
E 4 HOH A 7 306 306 HOH HOH . 
E 4 HOH A 8 307 307 HOH HOH . 
E 4 HOH A 9 308 308 HOH HOH . 
E 4 HOH A 10 309 309 HOH HOH . 
E 4 HOH A 11 310 310 HOH HOH . 
E 4 HOH A 12 311 311 HOH HOH . 
E 4 HOH A 13 312 312 HOH HOH . 
E 4 HOH A 14 313 313 HOH HOH . 
E 4 HOH A 15 314 314 HOH HOH . 
E 4 HOH A 16 315 315 HOH HOH . 
E 4 HOH A 17 316 316 HOH HOH . 
E 4 HOH A 18 317 317 HOH HOH . 
E 4 HOH A 19 318 318 HOH HOH . 
E 4 HOH A 20 319 319 HOH HOH . 
E 4 HOH A 21 320 320 HOH HOH . 
E 4 HOH A 22 321 321 HOH HOH . 
E 4 HOH A 23 322 322 HOH HOH . 
E 4 HOH A 24 323 323 HOH HOH . 
E 4 HOH A 25 324 324 HOH HOH . 
E 4 HOH A 26 325 325 HOH HOH . 
E 4 HOH A 27 326 326 HOH HOH . 
E 4 HOH A 28 327 327 HOH HOH . 
E 4 HOH A 29 328 328 HOH HOH . 
E 4 HOH A 30 329 329 HOH HOH . 
E 4 HOH A 31 330 330 HOH HOH . 
E 4 HOH A 32 331 331 HOH HOH . 
E 4 HOH A 33 332 332 HOH HOH . 
E 4 HOH A 34 333 333 HOH HOH . 
E 4 HOH A 35 334 334 HOH HOH . 
E 4 HOH A 36 335 335 HOH HOH . 
E 4 HOH A 37 336 336 HOH HOH . 
E 4 HOH A 38 337 337 HOH HOH . 
E 4 HOH A 39 338 338 HOH HOH . 
E 4 HOH A 40 339 339 HOH HOH . 
E 4 HOH A 41 340 340 HOH HOH . 
E 4 HOH A 42 341 341 HOH HOH . 
E 4 HOH A 43 342 342 HOH HOH . 
E 4 HOH A 44 343 343 HOH HOH . 
E 4 HOH A 45 344 344 HOH HOH . 
E 4 HOH A 46 345 345 HOH HOH . 
E 4 HOH A 47 346 346 HOH HOH . 
E 4 HOH A 48 347 347 HOH HOH . 
E 4 HOH A 49 348 348 HOH HOH . 
E 4 HOH A 50 349 349 HOH HOH . 
E 4 HOH A 51 350 350 HOH HOH . 
E 4 HOH A 52 351 351 HOH HOH . 
E 4 HOH A 53 352 352 HOH HOH . 
E 4 HOH A 54 353 353 HOH HOH . 
E 4 HOH A 55 354 354 HOH HOH . 
E 4 HOH A 56 355 355 HOH HOH . 
E 4 HOH A 57 356 356 HOH HOH . 
E 4 HOH A 58 357 357 HOH HOH . 
E 4 HOH A 59 358 358 HOH HOH . 
E 4 HOH A 60 359 359 HOH HOH . 
E 4 HOH A 61 360 360 HOH HOH . 
E 4 HOH A 62 361 361 HOH HOH . 
E 4 HOH A 63 362 362 HOH HOH . 
E 4 HOH A 64 363 363 HOH HOH . 
E 4 HOH A 65 364 364 HOH HOH . 
E 4 HOH A 66 365 365 HOH HOH . 
E 4 HOH A 67 366 366 HOH HOH . 
E 4 HOH A 68 367 367 HOH HOH . 
E 4 HOH A 69 368 368 HOH HOH . 
E 4 HOH A 70 369 369 HOH HOH . 
E 4 HOH A 71 370 370 HOH HOH . 
E 4 HOH A 72 371 371 HOH HOH . 
E 4 HOH A 73 372 372 HOH HOH . 
E 4 HOH A 74 373 373 HOH HOH . 
E 4 HOH A 75 374 374 HOH HOH . 
E 4 HOH A 76 375 375 HOH HOH . 
E 4 HOH A 77 376 376 HOH HOH . 
E 4 HOH A 78 377 377 HOH HOH . 
E 4 HOH A 79 378 378 HOH HOH . 
E 4 HOH A 80 379 379 HOH HOH . 
E 4 HOH A 81 380 380 HOH HOH . 
E 4 HOH A 82 381 381 HOH HOH . 
E 4 HOH A 83 382 382 HOH HOH . 
E 4 HOH A 84 383 383 HOH HOH . 
E 4 HOH A 85 384 384 HOH HOH . 
E 4 HOH A 86 385 385 HOH HOH . 
E 4 HOH A 87 386 386 HOH HOH . 
E 4 HOH A 88 387 387 HOH HOH . 
E 4 HOH A 89 388 388 HOH HOH . 
E 4 HOH A 90 389 389 HOH HOH . 
E 4 HOH A 91 390 390 HOH HOH . 
E 4 HOH A 92 391 391 HOH HOH . 
E 4 HOH A 93 392 392 HOH HOH . 
E 4 HOH A 94 393 393 HOH HOH . 
E 4 HOH A 95 394 394 HOH HOH . 
E 4 HOH A 96 395 395 HOH HOH . 
E 4 HOH A 97 396 396 HOH HOH . 
E 4 HOH A 98 397 397 HOH HOH . 
E 4 HOH A 99 398 398 HOH HOH . 
E 4 HOH A 100 399 399 HOH HOH . 
E 4 HOH A 101 400 400 HOH HOH . 
E 4 HOH A 102 401 401 HOH HOH . 
E 4 HOH A 103 402 402 HOH HOH . 
E 4 HOH A 104 403 403 HOH HOH . 
E 4 HOH A 105 404 404 HOH HOH . 
E 4 HOH A 106 405 405 HOH HOH . 
E 4 HOH A 107 406 406 HOH HOH . 
E 4 HOH A 108 407 407 HOH HOH . 
E 4 HOH A 109 408 408 HOH HOH . 
E 4 HOH A 110 409 409 HOH HOH . 
E 4 HOH A 111 410 410 HOH HOH . 
E 4 HOH A 112 411 411 HOH HOH . 
E 4 HOH A 113 412 412 HOH HOH . 
E 4 HOH A 114 413 413 HOH HOH . 
E 4 HOH A 115 414 414 HOH HOH . 
E 4 HOH A 116 415 415 HOH HOH . 
E 4 HOH A 117 416 416 HOH HOH . 
E 4 HOH A 118 417 417 HOH HOH . 
E 4 HOH A 119 418 418 HOH HOH . 
E 4 HOH A 120 419 419 HOH HOH . 
E 4 HOH A 121 420 420 HOH HOH . 
E 4 HOH A 122 421 421 HOH HOH . 
E 4 HOH A 123 422 422 HOH HOH . 
E 4 HOH A 124 423 423 HOH HOH . 
E 4 HOH A 125 424 424 HOH HOH . 
E 4 HOH A 126 425 425 HOH HOH . 
E 4 HOH A 127 426 426 HOH HOH . 
E 4 HOH A 128 427 427 HOH HOH . 
E 4 HOH A 129 428 428 HOH HOH . 
E 4 HOH A 130 429 429 HOH HOH . 
E 4 HOH A 131 430 430 HOH HOH . 
E 4 HOH A 132 431 431 HOH HOH . 
E 4 HOH A 133 432 432 HOH HOH . 
E 4 HOH A 134 433 433 HOH HOH . 
E 4 HOH A 135 434 434 HOH HOH . 
E 4 HOH A 136 435 435 HOH HOH . 
E 4 HOH A 137 436 436 HOH HOH . 
E 4 HOH A 138 437 437 HOH HOH . 
E 4 HOH A 139 438 438 HOH HOH . 
E 4 HOH A 140 439 439 HOH HOH . 
E 4 HOH A 141 440 440 HOH HOH . 
E 4 HOH A 142 441 441 HOH HOH . 
E 4 HOH A 143 442 442 HOH HOH . 
E 4 HOH A 144 443 443 HOH HOH . 
E 4 HOH A 145 444 444 HOH HOH . 
E 4 HOH A 146 445 445 HOH HOH . 
E 4 HOH A 147 446 446 HOH HOH . 
E 4 HOH A 148 447 447 HOH HOH . 
E 4 HOH A 149 448 448 HOH HOH . 
E 4 HOH A 150 449 449 HOH HOH . 
E 4 HOH A 151 450 450 HOH HOH . 
E 4 HOH A 152 451 451 HOH HOH . 
E 4 HOH A 153 452 452 HOH HOH . 
E 4 HOH A 154 453 453 HOH HOH . 
E 4 HOH A 155 454 454 HOH HOH . 
E 4 HOH A 156 455 455 HOH HOH . 
E 4 HOH A 157 456 456 HOH HOH . 
E 4 HOH A 158 457 457 HOH HOH . 
E 4 HOH A 159 458 458 HOH HOH . 
E 4 HOH A 160 459 459 HOH HOH . 
E 4 HOH A 161 460 460 HOH HOH . 
E 4 HOH A 162 461 461 HOH HOH . 
E 4 HOH A 163 462 462 HOH HOH . 
E 4 HOH A 164 463 463 HOH HOH . 
E 4 HOH A 165 464 464 HOH HOH . 
E 4 HOH A 166 465 465 HOH HOH . 
E 4 HOH A 167 466 466 HOH HOH . 
E 4 HOH A 168 467 467 HOH HOH . 
E 4 HOH A 169 468 468 HOH HOH . 
E 4 HOH A 170 469 469 HOH HOH . 
E 4 HOH A 171 470 470 HOH HOH . 
E 4 HOH A 172 471 471 HOH HOH . 
E 4 HOH A 173 472 472 HOH HOH . 
E 4 HOH A 174 473 473 HOH HOH . 
E 4 HOH A 175 474 474 HOH HOH . 
E 4 HOH A 176 475 475 HOH HOH . 
E 4 HOH A 177 476 476 HOH HOH . 
E 4 HOH A 178 477 477 HOH HOH . 
E 4 HOH A 179 478 478 HOH HOH . 
E 4 HOH A 180 479 479 HOH HOH . 
E 4 HOH A 181 480 480 HOH HOH . 
E 4 HOH A 182 481 481 HOH HOH . 
E 4 HOH A 183 482 482 HOH HOH . 
E 4 HOH A 184 483 483 HOH HOH . 
E 4 HOH A 185 484 484 HOH HOH . 
E 4 HOH A 186 485 485 HOH HOH . 
E 4 HOH A 187 486 486 HOH HOH . 
E 4 HOH A 188 487 487 HOH HOH . 
E 4 HOH A 189 488 488 HOH HOH . 
E 4 HOH A 190 489 489 HOH HOH . 
E 4 HOH A 191 490 490 HOH HOH . 
E 4 HOH A 192 491 491 HOH HOH . 
E 4 HOH A 193 492 492 HOH HOH . 
E 4 HOH A 194 493 493 HOH HOH . 
E 4 HOH A 195 494 494 HOH HOH . 
E 4 HOH A 196 495 495 HOH HOH . 
E 4 HOH A 197 496 496 HOH HOH . 
E 4 HOH A 198 497 497 HOH HOH . 
E 4 HOH A 199 498 498 HOH HOH . 
E 4 HOH A 200 499 499 HOH HOH . 
E 4 HOH A 201 500 500 HOH HOH . 
E 4 HOH A 202 501 501 HOH HOH . 
E 4 HOH A 203 502 502 HOH HOH . 
E 4 HOH A 204 503 503 HOH HOH . 
E 4 HOH A 205 504 504 HOH HOH . 
E 4 HOH A 206 505 505 HOH HOH . 
E 4 HOH A 207 506 506 HOH HOH . 
E 4 HOH A 208 507 507 HOH HOH . 
E 4 HOH A 209 508 508 HOH HOH . 
E 4 HOH A 210 509 509 HOH HOH . 
E 4 HOH A 211 510 510 HOH HOH . 
E 4 HOH A 212 511 511 HOH HOH . 
E 4 HOH A 213 512 512 HOH HOH . 
E 4 HOH A 214 513 513 HOH HOH . 
E 4 HOH A 215 514 514 HOH HOH . 
E 4 HOH A 216 515 515 HOH HOH . 
E 4 HOH A 217 516 516 HOH HOH . 
E 4 HOH A 218 517 517 HOH HOH . 
E 4 HOH A 219 518 518 HOH HOH . 
E 4 HOH A 220 519 519 HOH HOH . 
E 4 HOH A 221 520 520 HOH HOH . 
E 4 HOH A 222 521 521 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S1 DTU . . . B 2 22.418 43.189 169.359 1 67.16 ? S1 DTU 1001 A 1 
HETATM 2 C C1 DTU . . . B 2 21.176 44.124 168.431 1 53.62 ? C1 DTU 1001 A 1 
HETATM 3 C C2 DTU . . . B 2 21.091 43.683 166.969 1 62.01 ? C2 DTU 1001 A 1 
HETATM 4 O O2 DTU . . . B 2 20.982 42.278 166.873 1 75.1 ? O2 DTU 1001 A 1 
HETATM 5 C C3 DTU . . . B 2 22.316 44.208 166.226 1 63.13 ? C3 DTU 1001 A 1 
HETATM 6 O O3 DTU . . . B 2 21.986 45.504 165.798 1 50.55 ? O3 DTU 1001 A 1 
HETATM 7 C C4 DTU . . . B 2 22.79 43.364 165.04 1 49.98 ? C4 DTU 1001 A 1 
HETATM 8 S S4 DTU . . . B 2 24.4 42.54 165.306 1 46.89 ? S4 DTU 1001 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           271 
_model_server_stats.encode_time_ms          13 
_model_server_stats.element_count           8 
#