data_1YWQ # _model_server_result.job_id aZlhuSMouqF08KP0YSnW3Q _model_server_result.datetime_utc '2025-02-16 22:55:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ywq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 1YWQ # _exptl.entry_id 1YWQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1YWQ _cell.length_a 80.94 _cell.length_b 80.94 _cell.length_c 91.674 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YWQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 70 n n N1 C10 FMN doub 71 n n C2 O2 FMN doub 72 n n C2 N3 FMN sing 73 n n N3 C4 FMN sing 74 n n N3 HN3 FMN sing 75 n n C4 O4 FMN doub 76 n n C4 C4A FMN sing 77 n n C4A N5 FMN doub 78 n n C4A C10 FMN sing 79 n n N5 C5A FMN sing 80 n n C5A C6 FMN doub 81 n y C5A C9A FMN sing 82 n y C6 C7 FMN sing 83 n y C6 H6 FMN sing 84 n n C7 C7M FMN sing 85 n n C7 C8 FMN doub 86 n y C7M HM71 FMN sing 87 n n C7M HM72 FMN sing 88 n n C7M HM73 FMN sing 89 n n C8 C8M FMN sing 90 n n C8 C9 FMN sing 91 n y C8M HM81 FMN sing 92 n n C8M HM82 FMN sing 93 n n C8M HM83 FMN sing 94 n n C9 C9A FMN doub 95 n y C9 H9 FMN sing 96 n n C9A N10 FMN sing 97 n n N10 C10 FMN sing 98 n n N10 C1' FMN sing 99 n n C1' C2' FMN sing 100 n n C1' "H1'1" FMN sing 101 n n C1' "H1'2" FMN sing 102 n n C2' O2' FMN sing 103 n n C2' C3' FMN sing 104 n n C2' H2' FMN sing 105 n n O2' HO2' FMN sing 106 n n C3' O3' FMN sing 107 n n C3' C4' FMN sing 108 n n C3' H3' FMN sing 109 n n O3' HO3' FMN sing 110 n n C4' O4' FMN sing 111 n n C4' C5' FMN sing 112 n n C4' H4' FMN sing 113 n n O4' HO4' FMN sing 114 n n C5' O5' FMN sing 115 n n C5' "H5'1" FMN sing 116 n n C5' "H5'2" FMN sing 117 n n O5' P FMN sing 118 n n P O1P FMN doub 119 n n P O2P FMN sing 120 n n P O3P FMN sing 121 n n O2P HOP2 FMN sing 122 n n O3P HOP3 FMN sing 123 n n # _atom_sites.entry_id 1YWQ _atom_sites.fract_transf_matrix[1][1] 0.012355 _atom_sites.fract_transf_matrix[1][2] 0.007133 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014266 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010908 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 201 151 FMN FMN . C 3 HOH A 1 301 301 HOH TIP . C 3 HOH A 2 302 302 HOH TIP . C 3 HOH A 3 303 303 HOH TIP . C 3 HOH A 4 304 304 HOH TIP . C 3 HOH A 5 305 305 HOH TIP . C 3 HOH A 6 306 306 HOH TIP . C 3 HOH A 7 307 307 HOH TIP . C 3 HOH A 8 308 308 HOH TIP . C 3 HOH A 9 309 309 HOH TIP . C 3 HOH A 10 310 310 HOH TIP . C 3 HOH A 11 311 311 HOH TIP . C 3 HOH A 12 312 312 HOH TIP . C 3 HOH A 13 313 313 HOH TIP . C 3 HOH A 14 314 314 HOH TIP . C 3 HOH A 15 315 315 HOH TIP . C 3 HOH A 16 316 316 HOH TIP . C 3 HOH A 17 317 317 HOH TIP . C 3 HOH A 18 318 318 HOH TIP . C 3 HOH A 19 319 319 HOH TIP . C 3 HOH A 20 320 320 HOH TIP . C 3 HOH A 21 321 321 HOH TIP . C 3 HOH A 22 322 322 HOH TIP . C 3 HOH A 23 323 323 HOH TIP . C 3 HOH A 24 324 324 HOH TIP . C 3 HOH A 25 325 325 HOH TIP . C 3 HOH A 26 326 326 HOH TIP . C 3 HOH A 27 327 327 HOH TIP . C 3 HOH A 28 328 328 HOH TIP . C 3 HOH A 29 329 329 HOH TIP . C 3 HOH A 30 330 330 HOH TIP . C 3 HOH A 31 331 331 HOH TIP . C 3 HOH A 32 332 332 HOH TIP . C 3 HOH A 33 333 333 HOH TIP . C 3 HOH A 34 334 334 HOH TIP . C 3 HOH A 35 335 335 HOH TIP . C 3 HOH A 36 336 336 HOH TIP . C 3 HOH A 37 337 337 HOH TIP . C 3 HOH A 38 338 338 HOH TIP . C 3 HOH A 39 339 339 HOH TIP . C 3 HOH A 40 340 340 HOH TIP . C 3 HOH A 41 341 341 HOH TIP . C 3 HOH A 42 342 342 HOH TIP . C 3 HOH A 43 343 343 HOH TIP . C 3 HOH A 44 344 344 HOH TIP . C 3 HOH A 45 345 345 HOH TIP . C 3 HOH A 46 346 346 HOH TIP . C 3 HOH A 47 347 347 HOH TIP . C 3 HOH A 48 348 348 HOH TIP . C 3 HOH A 49 349 349 HOH TIP . C 3 HOH A 50 350 350 HOH TIP . C 3 HOH A 51 351 351 HOH TIP . C 3 HOH A 52 352 352 HOH TIP . C 3 HOH A 53 353 353 HOH TIP . C 3 HOH A 54 354 354 HOH TIP . C 3 HOH A 55 355 355 HOH TIP . C 3 HOH A 56 356 356 HOH TIP . C 3 HOH A 57 357 357 HOH TIP . C 3 HOH A 58 358 358 HOH TIP . C 3 HOH A 59 359 359 HOH TIP . C 3 HOH A 60 360 360 HOH TIP . C 3 HOH A 61 361 361 HOH TIP . C 3 HOH A 62 362 362 HOH TIP . C 3 HOH A 63 363 363 HOH TIP . C 3 HOH A 64 364 364 HOH TIP . C 3 HOH A 65 365 365 HOH TIP . C 3 HOH A 66 366 366 HOH TIP . C 3 HOH A 67 367 367 HOH TIP . C 3 HOH A 68 368 368 HOH TIP . C 3 HOH A 69 369 369 HOH TIP . C 3 HOH A 70 370 370 HOH TIP . C 3 HOH A 71 371 371 HOH TIP . C 3 HOH A 72 372 372 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . B 2 26.437 21.21 -7.829 1 35.28 ? N1 FMN 201 A 1 HETATM 2 C C2 FMN . . . B 2 27.183 21.399 -8.965 1 35.2 ? C2 FMN 201 A 1 HETATM 3 O O2 FMN . . . B 2 27.637 20.476 -9.615 1 35.07 ? O2 FMN 201 A 1 HETATM 4 N N3 FMN . . . B 2 27.387 22.749 -9.343 1 35.07 ? N3 FMN 201 A 1 HETATM 5 C C4 FMN . . . B 2 26.902 23.927 -8.67 1 37.63 ? C4 FMN 201 A 1 HETATM 6 O O4 FMN . . . B 2 27.153 25.043 -9.119 1 40.89 ? O4 FMN 201 A 1 HETATM 7 C C4A FMN . . . B 2 26.138 23.667 -7.518 1 37.31 ? C4A FMN 201 A 1 HETATM 8 N N5 FMN . . . B 2 25.533 24.616 -6.692 1 39.26 ? N5 FMN 201 A 1 HETATM 9 C C5A FMN . . . B 2 24.733 24.466 -5.549 1 36.7 ? C5A FMN 201 A 1 HETATM 10 C C6 FMN . . . B 2 24.153 25.614 -4.815 1 37.68 ? C6 FMN 201 A 1 HETATM 11 C C7 FMN . . . B 2 23.292 25.349 -3.636 1 36.42 ? C7 FMN 201 A 1 HETATM 12 C C7M FMN . . . B 2 22.698 26.549 -2.906 1 37.94 ? C7M FMN 201 A 1 HETATM 13 C C8 FMN . . . B 2 23.039 23.954 -3.224 1 37.69 ? C8 FMN 201 A 1 HETATM 14 C C8M FMN . . . B 2 22.149 23.511 -2.017 1 38.83 ? C8M FMN 201 A 1 HETATM 15 C C9 FMN . . . B 2 23.649 22.9 -3.982 1 35.75 ? C9 FMN 201 A 1 HETATM 16 C C9A FMN . . . B 2 24.506 23.148 -5.159 1 37.75 ? C9A FMN 201 A 1 HETATM 17 N N10 FMN . . . B 2 25.126 22.153 -5.968 1 38.25 ? N10 FMN 201 A 1 HETATM 18 C C10 FMN . . . B 2 25.929 22.288 -7.131 1 36.91 ? C10 FMN 201 A 1 HETATM 19 C C1' FMN . . . B 2 24.837 20.796 -5.493 1 39.19 ? C1' FMN 201 A 1 HETATM 20 C C2' FMN . . . B 2 25.625 20.279 -4.279 1 43.21 ? C2' FMN 201 A 1 HETATM 21 O O2' FMN . . . B 2 27.016 20.109 -4.562 1 42.57 ? O2' FMN 201 A 1 HETATM 22 C C3' FMN . . . B 2 24.95 19.011 -4.058 1 45.45 ? C3' FMN 201 A 1 HETATM 23 O O3' FMN . . . B 2 23.557 19.273 -3.803 1 48.29 ? O3' FMN 201 A 1 HETATM 24 C C4' FMN . . . B 2 25.402 18.101 -2.925 1 47.25 ? C4' FMN 201 A 1 HETATM 25 O O4' FMN . . . B 2 26.812 17.827 -2.926 1 45.89 ? O4' FMN 201 A 1 HETATM 26 C C5' FMN . . . B 2 24.644 16.976 -3.329 1 51.43 ? C5' FMN 201 A 1 HETATM 27 O O5' FMN . . . B 2 24.658 15.856 -2.687 1 53.49 ? O5' FMN 201 A 1 HETATM 28 P P FMN . . . B 2 23.71 14.927 -3.415 1 52.65 ? P FMN 201 A 1 HETATM 29 O O1P FMN . . . B 2 24.169 13.962 -4.437 1 56.49 ? O1P FMN 201 A 1 HETATM 30 O O2P FMN . . . B 2 22.403 14.741 -2.722 1 57.31 ? O2P FMN 201 A 1 HETATM 31 O O3P FMN . . . B 2 24.227 14.101 -2.322 1 60.49 ? O3P FMN 201 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #