data_1YWR # _model_server_result.job_id RkeLQAoogMNoH951GPLPhA _model_server_result.datetime_utc '2024-10-20 20:44:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ywr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":361}' # _entry.id 1YWR # _exptl.entry_id 1YWR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 472.557 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-(4-FLUOROPHENYL)-1-METHYL-5-(2-{[(1S)-1-PHENYLETHYL]AMINO}PYRIMIDIN-4-YL)-2-PIPERIDIN-4-YL-1,2-DIHYDRO-3H-PYRAZOL-3-ONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1YWR _cell.length_a 65.736 _cell.length_b 74.575 _cell.length_c 77.377 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YWR _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H29 F N6 O' _chem_comp.formula_weight 472.557 _chem_comp.id LI9 _chem_comp.mon_nstd_flag . _chem_comp.name 4-(4-FLUOROPHENYL)-1-METHYL-5-(2-{[(1S)-1-PHENYLETHYL]AMINO}PYRIMIDIN-4-YL)-2-PIPERIDIN-4-YL-1,2-DIHYDRO-3H-PYRAZOL-3-ONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C3 LI9 doub 194 n y C1 C4 LI9 sing 195 n y C1 H1 LI9 sing 196 n n C2 C5 LI9 sing 197 n y C2 C6 LI9 doub 198 n y C2 H2 LI9 sing 199 n n C3 C6 LI9 sing 200 n y C3 C7 LI9 sing 201 n y C4 C5 LI9 doub 202 n y C4 H4 LI9 sing 203 n n C5 F9 LI9 sing 204 n n C6 H6 LI9 sing 205 n n C7 C13 LI9 doub 206 n y C7 C16 LI9 sing 207 n y N10 C11 LI9 sing 208 n n N10 C16 LI9 sing 209 n y N10 N17 LI9 sing 210 n y C11 C20 LI9 sing 211 n n C11 C21 LI9 sing 212 n n C11 H11 LI9 sing 213 n n C12 N17 LI9 sing 214 n n C12 H121 LI9 sing 215 n n C12 H122 LI9 sing 216 n n C12 H123 LI9 sing 217 n n C13 C14 LI9 sing 218 n y C13 N17 LI9 sing 219 n y C14 N23 LI9 doub 220 n y C14 C26 LI9 sing 221 n y O15 C16 LI9 doub 222 n n C18 C21 LI9 sing 223 n n C18 N22 LI9 sing 224 n n C18 H181 LI9 sing 225 n n C18 H182 LI9 sing 226 n n C19 C20 LI9 sing 227 n n C19 N22 LI9 sing 228 n n C19 H191 LI9 sing 229 n n C19 H192 LI9 sing 230 n n C20 H201 LI9 sing 231 n n C20 H202 LI9 sing 232 n n C21 H211 LI9 sing 233 n n C21 H212 LI9 sing 234 n n N22 H22 LI9 sing 235 n n N23 C27 LI9 sing 236 n y C24 C26 LI9 doub 237 n y C24 N28 LI9 sing 238 n y C24 H24 LI9 sing 239 n n N25 C27 LI9 sing 240 n n N25 C29 LI9 sing 241 n n N25 H25 LI9 sing 242 n n C26 H26 LI9 sing 243 n n C27 N28 LI9 doub 244 n y C29 C30 LI9 sing 245 n n C29 C31 LI9 sing 246 n n C29 H29 LI9 sing 247 n n C30 C33 LI9 doub 248 n y C30 C34 LI9 sing 249 n y C31 H311 LI9 sing 250 n n C31 H312 LI9 sing 251 n n C31 H313 LI9 sing 252 n n C32 C35 LI9 sing 253 n y C32 C36 LI9 doub 254 n y C32 H32 LI9 sing 255 n n C33 C36 LI9 sing 256 n y C33 H33 LI9 sing 257 n n C34 C35 LI9 doub 258 n y C34 H34 LI9 sing 259 n n C35 H35 LI9 sing 260 n n C36 H36 LI9 sing 261 n n # _atom_sites.entry_id 1YWR _atom_sites.fract_transf_matrix[1][1] 0.015212 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013409 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012924 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 LI9 A 1 361 1 LI9 LIG . C 3 HOH A 1 362 1 HOH HOH . C 3 HOH A 2 363 2 HOH HOH . C 3 HOH A 3 364 3 HOH HOH . C 3 HOH A 4 365 4 HOH HOH . C 3 HOH A 5 366 5 HOH HOH . C 3 HOH A 6 367 6 HOH HOH . C 3 HOH A 7 368 7 HOH HOH . C 3 HOH A 8 369 8 HOH HOH . C 3 HOH A 9 370 9 HOH HOH . C 3 HOH A 10 371 10 HOH HOH . C 3 HOH A 11 372 11 HOH HOH . C 3 HOH A 12 373 12 HOH HOH . C 3 HOH A 13 374 13 HOH HOH . C 3 HOH A 14 375 14 HOH HOH . C 3 HOH A 15 376 15 HOH HOH . C 3 HOH A 16 377 16 HOH HOH . C 3 HOH A 17 378 17 HOH HOH . C 3 HOH A 18 379 18 HOH HOH . C 3 HOH A 19 380 19 HOH HOH . C 3 HOH A 20 381 20 HOH HOH . C 3 HOH A 21 382 21 HOH HOH . C 3 HOH A 22 383 22 HOH HOH . C 3 HOH A 23 384 23 HOH HOH . C 3 HOH A 24 385 24 HOH HOH . C 3 HOH A 25 386 25 HOH HOH . C 3 HOH A 26 387 26 HOH HOH . C 3 HOH A 27 388 27 HOH HOH . C 3 HOH A 28 389 28 HOH HOH . C 3 HOH A 29 390 29 HOH HOH . C 3 HOH A 30 391 30 HOH HOH . C 3 HOH A 31 392 31 HOH HOH . C 3 HOH A 32 393 32 HOH HOH . C 3 HOH A 33 394 33 HOH HOH . C 3 HOH A 34 395 34 HOH HOH . C 3 HOH A 35 396 35 HOH HOH . C 3 HOH A 36 397 36 HOH HOH . C 3 HOH A 37 398 37 HOH HOH . C 3 HOH A 38 399 38 HOH HOH . C 3 HOH A 39 400 39 HOH HOH . C 3 HOH A 40 401 40 HOH HOH . C 3 HOH A 41 402 41 HOH HOH . C 3 HOH A 42 403 42 HOH HOH . C 3 HOH A 43 404 43 HOH HOH . C 3 HOH A 44 405 44 HOH HOH . C 3 HOH A 45 406 45 HOH HOH . C 3 HOH A 46 407 46 HOH HOH . C 3 HOH A 47 408 47 HOH HOH . C 3 HOH A 48 409 48 HOH HOH . C 3 HOH A 49 410 49 HOH HOH . C 3 HOH A 50 411 50 HOH HOH . C 3 HOH A 51 412 51 HOH HOH . C 3 HOH A 52 413 52 HOH HOH . C 3 HOH A 53 414 53 HOH HOH . C 3 HOH A 54 415 54 HOH HOH . C 3 HOH A 55 416 55 HOH HOH . C 3 HOH A 56 417 56 HOH HOH . C 3 HOH A 57 418 57 HOH HOH . C 3 HOH A 58 419 58 HOH HOH . C 3 HOH A 59 420 59 HOH HOH . C 3 HOH A 60 421 60 HOH HOH . C 3 HOH A 61 422 61 HOH HOH . C 3 HOH A 62 423 62 HOH HOH . C 3 HOH A 63 424 63 HOH HOH . C 3 HOH A 64 425 64 HOH HOH . C 3 HOH A 65 426 65 HOH HOH . C 3 HOH A 66 427 66 HOH HOH . C 3 HOH A 67 428 67 HOH HOH . C 3 HOH A 68 429 68 HOH HOH . C 3 HOH A 69 430 69 HOH HOH . C 3 HOH A 70 431 70 HOH HOH . C 3 HOH A 71 432 71 HOH HOH . C 3 HOH A 72 433 72 HOH HOH . C 3 HOH A 73 434 73 HOH HOH . C 3 HOH A 74 435 74 HOH HOH . C 3 HOH A 75 436 75 HOH HOH . C 3 HOH A 76 437 76 HOH HOH . C 3 HOH A 77 438 77 HOH HOH . C 3 HOH A 78 439 78 HOH HOH . C 3 HOH A 79 440 79 HOH HOH . C 3 HOH A 80 441 80 HOH HOH . C 3 HOH A 81 442 81 HOH HOH . C 3 HOH A 82 443 82 HOH HOH . C 3 HOH A 83 444 83 HOH HOH . C 3 HOH A 84 445 84 HOH HOH . C 3 HOH A 85 446 85 HOH HOH . C 3 HOH A 86 447 86 HOH HOH . C 3 HOH A 87 448 87 HOH HOH . C 3 HOH A 88 449 88 HOH HOH . C 3 HOH A 89 450 89 HOH HOH . C 3 HOH A 90 451 90 HOH HOH . C 3 HOH A 91 452 91 HOH HOH . C 3 HOH A 92 453 92 HOH HOH . C 3 HOH A 93 454 93 HOH HOH . C 3 HOH A 94 455 94 HOH HOH . C 3 HOH A 95 456 95 HOH HOH . C 3 HOH A 96 457 96 HOH HOH . C 3 HOH A 97 458 97 HOH HOH . C 3 HOH A 98 459 98 HOH HOH . C 3 HOH A 99 460 99 HOH HOH . C 3 HOH A 100 461 100 HOH HOH . C 3 HOH A 101 462 101 HOH HOH . C 3 HOH A 102 463 102 HOH HOH . C 3 HOH A 103 464 103 HOH HOH . C 3 HOH A 104 465 104 HOH HOH . C 3 HOH A 105 466 105 HOH HOH . C 3 HOH A 106 467 106 HOH HOH . C 3 HOH A 107 468 107 HOH HOH . C 3 HOH A 108 469 108 HOH HOH . C 3 HOH A 109 470 109 HOH HOH . C 3 HOH A 110 471 110 HOH HOH . C 3 HOH A 111 472 111 HOH HOH . C 3 HOH A 112 473 112 HOH HOH . C 3 HOH A 113 474 113 HOH HOH . C 3 HOH A 114 475 114 HOH HOH . C 3 HOH A 115 476 115 HOH HOH . C 3 HOH A 116 477 116 HOH HOH . C 3 HOH A 117 478 117 HOH HOH . C 3 HOH A 118 479 118 HOH HOH . C 3 HOH A 119 480 119 HOH HOH . C 3 HOH A 120 481 120 HOH HOH . C 3 HOH A 121 482 121 HOH HOH . C 3 HOH A 122 483 122 HOH HOH . C 3 HOH A 123 484 123 HOH HOH . C 3 HOH A 124 485 124 HOH HOH . C 3 HOH A 125 486 125 HOH HOH . C 3 HOH A 126 487 126 HOH HOH . C 3 HOH A 127 488 127 HOH HOH . C 3 HOH A 128 489 128 HOH HOH . C 3 HOH A 129 490 129 HOH HOH . C 3 HOH A 130 491 130 HOH HOH . C 3 HOH A 131 492 131 HOH HOH . C 3 HOH A 132 493 132 HOH HOH . C 3 HOH A 133 494 133 HOH HOH . C 3 HOH A 134 495 134 HOH HOH . C 3 HOH A 135 496 135 HOH HOH . C 3 HOH A 136 497 136 HOH HOH . C 3 HOH A 137 498 137 HOH HOH . C 3 HOH A 138 499 138 HOH HOH . C 3 HOH A 139 500 139 HOH HOH . C 3 HOH A 140 501 140 HOH HOH . C 3 HOH A 141 502 141 HOH HOH . C 3 HOH A 142 503 142 HOH HOH . C 3 HOH A 143 504 143 HOH HOH . C 3 HOH A 144 505 144 HOH HOH . C 3 HOH A 145 506 145 HOH HOH . C 3 HOH A 146 507 146 HOH HOH . C 3 HOH A 147 508 147 HOH HOH . C 3 HOH A 148 509 148 HOH HOH . C 3 HOH A 149 510 149 HOH HOH . C 3 HOH A 150 511 150 HOH HOH . C 3 HOH A 151 512 151 HOH HOH . C 3 HOH A 152 513 152 HOH HOH . C 3 HOH A 153 514 153 HOH HOH . C 3 HOH A 154 515 154 HOH HOH . C 3 HOH A 155 516 155 HOH HOH . C 3 HOH A 156 517 156 HOH HOH . C 3 HOH A 157 518 157 HOH HOH . C 3 HOH A 158 519 158 HOH HOH . C 3 HOH A 159 520 159 HOH HOH . C 3 HOH A 160 521 160 HOH HOH . C 3 HOH A 161 522 161 HOH HOH . C 3 HOH A 162 523 162 HOH HOH . C 3 HOH A 163 524 163 HOH HOH . C 3 HOH A 164 525 164 HOH HOH . C 3 HOH A 165 526 165 HOH HOH . C 3 HOH A 166 527 166 HOH HOH . C 3 HOH A 167 528 167 HOH HOH . C 3 HOH A 168 529 168 HOH HOH . C 3 HOH A 169 530 169 HOH HOH . C 3 HOH A 170 531 170 HOH HOH . C 3 HOH A 171 532 171 HOH HOH . C 3 HOH A 172 533 172 HOH HOH . C 3 HOH A 173 534 173 HOH HOH . C 3 HOH A 174 535 174 HOH HOH . C 3 HOH A 175 536 175 HOH HOH . C 3 HOH A 176 537 176 HOH HOH . C 3 HOH A 177 538 177 HOH HOH . C 3 HOH A 178 539 178 HOH HOH . C 3 HOH A 179 540 179 HOH HOH . C 3 HOH A 180 541 180 HOH HOH . C 3 HOH A 181 542 181 HOH HOH . C 3 HOH A 182 543 182 HOH HOH . C 3 HOH A 183 544 183 HOH HOH . C 3 HOH A 184 545 184 HOH HOH . C 3 HOH A 185 546 185 HOH HOH . C 3 HOH A 186 547 186 HOH HOH . C 3 HOH A 187 548 187 HOH HOH . C 3 HOH A 188 549 188 HOH HOH . C 3 HOH A 189 550 189 HOH HOH . C 3 HOH A 190 551 190 HOH HOH . C 3 HOH A 191 552 191 HOH HOH . C 3 HOH A 192 553 192 HOH HOH . C 3 HOH A 193 554 193 HOH HOH . C 3 HOH A 194 555 194 HOH HOH . C 3 HOH A 195 556 195 HOH HOH . C 3 HOH A 196 557 196 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 LI9 . . . B 2 5.449 -0.508 18.624 1 21.56 ? C1 LI9 361 A 1 HETATM 2 C C2 LI9 . . . B 2 4.565 -0.81 16.006 1 28.16 ? C2 LI9 361 A 1 HETATM 3 C C3 LI9 . . . B 2 4.182 -1.073 18.382 1 24.13 ? C3 LI9 361 A 1 HETATM 4 C C4 LI9 . . . B 2 6.285 -0.091 17.586 1 16.55 ? C4 LI9 361 A 1 HETATM 5 C C5 LI9 . . . B 2 5.81 -0.257 16.289 1 26.67 ? C5 LI9 361 A 1 HETATM 6 C C6 LI9 . . . B 2 3.737 -1.224 17.06 1 29.84 ? C6 LI9 361 A 1 HETATM 7 C C7 LI9 . . . B 2 3.381 -1.479 19.543 1 29.91 ? C7 LI9 361 A 1 HETATM 8 F F9 LI9 . . . B 2 6.599 0.137 15.295 1 30.94 ? F9 LI9 361 A 1 HETATM 9 N N10 LI9 . . . B 2 2.175 -2.989 20.849 1 39.19 ? N10 LI9 361 A 1 HETATM 10 C C11 LI9 . . . B 2 1.48 -4.159 21.375 1 46.41 ? C11 LI9 361 A 1 HETATM 11 C C12 LI9 . . . B 2 1.576 -1.634 22.778 1 37.26 ? C12 LI9 361 A 1 HETATM 12 C C13 LI9 . . . B 2 2.908 -0.868 20.651 1 31.84 ? C13 LI9 361 A 1 HETATM 13 C C14 LI9 . . . B 2 3.075 0.531 21.058 1 27.16 ? C14 LI9 361 A 1 HETATM 14 O O15 LI9 . . . B 2 3.097 -3.803 18.877 1 40.54 ? O15 LI9 361 A 1 HETATM 15 C C16 LI9 . . . B 2 2.895 -2.902 19.667 1 37.03 ? C16 LI9 361 A 1 HETATM 16 N N17 LI9 . . . B 2 2.178 -1.731 21.466 1 34.79 ? N17 LI9 361 A 1 HETATM 17 C C18 LI9 . . . B 2 -0.59 -5.572 21.213 1 49.49 ? C18 LI9 361 A 1 HETATM 18 C C19 LI9 . . . B 2 1.536 -6.678 21.496 1 45.61 ? C19 LI9 361 A 1 HETATM 19 C C20 LI9 . . . B 2 2.315 -5.42 21.132 1 48.56 ? C20 LI9 361 A 1 HETATM 20 C C21 LI9 . . . B 2 0.081 -4.277 20.76 1 47.35 ? C21 LI9 361 A 1 HETATM 21 N N22 LI9 . . . B 2 0.242 -6.707 20.816 1 47.73 ? N22 LI9 361 A 1 HETATM 22 N N23 LI9 . . . B 2 3.228 0.82 22.359 1 23.79 ? N23 LI9 361 A 1 HETATM 23 C C24 LI9 . . . B 2 3.229 2.809 20.514 1 27.51 ? C24 LI9 361 A 1 HETATM 24 N N25 LI9 . . . B 2 3.537 2.465 23.989 1 34.36 ? N25 LI9 361 A 1 HETATM 25 C C26 LI9 . . . B 2 3.069 1.514 20.085 1 29.09 ? C26 LI9 361 A 1 HETATM 26 C C27 LI9 . . . B 2 3.378 2.105 22.689 1 30.71 ? C27 LI9 361 A 1 HETATM 27 N N28 LI9 . . . B 2 3.384 3.114 21.813 1 27.11 ? N28 LI9 361 A 1 HETATM 28 C C29 LI9 . . . B 2 3.445 1.565 25.099 1 34.27 ? C29 LI9 361 A 1 HETATM 29 C C30 LI9 . . . B 2 2.105 0.886 25.292 1 35.46 ? C30 LI9 361 A 1 HETATM 30 C C31 LI9 . . . B 2 3.796 2.306 26.405 1 41.09 ? C31 LI9 361 A 1 HETATM 31 C C32 LI9 . . . B 2 -0.327 -0.429 25.695 1 36.12 ? C32 LI9 361 A 1 HETATM 32 C C33 LI9 . . . B 2 2.063 -0.309 26.029 1 36.24 ? C33 LI9 361 A 1 HETATM 33 C C34 LI9 . . . B 2 0.918 1.403 24.767 1 38.22 ? C34 LI9 361 A 1 HETATM 34 C C35 LI9 . . . B 2 -0.299 0.75 24.965 1 36.98 ? C35 LI9 361 A 1 HETATM 35 C C36 LI9 . . . B 2 0.846 -0.952 26.222 1 41.4 ? C36 LI9 361 A 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 35 #