data_1YXI # _model_server_result.job_id 0La41ECT7_q_3u9N7raGYw _model_server_result.datetime_utc '2024-10-20 19:20:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1yxi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":340}' # _entry.id 1YXI # _exptl.entry_id 1YXI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1YXI _cell.length_a 52.79 _cell.length_b 82.8 _cell.length_c 165.51 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YXI _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 68 A ASP 68 1_555 G MG MG . A MG 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc2 A OE1 GLU 97 A GLU 97 1_555 E MG MG . A MG 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc3 A OE2 GLU 97 A GLU 97 1_555 G MG MG . A MG 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc4 A OD2 ASP 118 A ASP 118 1_555 E MG MG . A MG 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc5 A OD1 ASP 118 A ASP 118 1_555 F MG MG . A MG 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? metalc ? metalc6 A O LEU 120 A LEU 120 1_555 E MG MG . A MG 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc7 A OD1 ASP 121 A ASP 121 1_555 F MG MG . A MG 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc8 A OE1 GLU 280 A GLU 280 1_555 F MG MG . A MG 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? metalc ? metalc9 E MG MG . A MG 340 1_555 D O2 PO4 . A PO4 434 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? metalc ? metalc10 E MG MG . A MG 340 1_555 D O4 PO4 . A PO4 434 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc11 F MG MG . A MG 341 1_555 D O2 PO4 . A PO4 434 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc12 G MG MG . A MG 342 1_555 D O4 PO4 . A PO4 434 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? metalc ? metalc13 G MG MG . A MG 342 1_555 D O3 PO4 . A PO4 434 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1YXI _atom_sites.fract_transf_matrix[1][1] 0.018943 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012077 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006042 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 F6P A 1 339 339 F6P F6P . C 3 PO4 A 1 338 338 PO4 PO4 . D 3 PO4 A 1 434 434 PO4 PO4 . E 4 MG A 1 340 340 MG MG . F 4 MG A 1 341 341 MG MG . G 4 MG A 1 342 342 MG MG . H 5 HOH A 1 501 501 HOH HOH . H 5 HOH A 2 502 502 HOH HOH . H 5 HOH A 3 503 503 HOH HOH . H 5 HOH A 4 504 504 HOH HOH . H 5 HOH A 5 505 505 HOH HOH . H 5 HOH A 6 506 506 HOH HOH . H 5 HOH A 7 507 507 HOH HOH . H 5 HOH A 8 508 508 HOH HOH . H 5 HOH A 9 509 509 HOH HOH . H 5 HOH A 10 510 510 HOH HOH . H 5 HOH A 11 511 511 HOH HOH . H 5 HOH A 12 512 512 HOH HOH . H 5 HOH A 13 513 513 HOH HOH . H 5 HOH A 14 514 514 HOH HOH . H 5 HOH A 15 515 515 HOH HOH . H 5 HOH A 16 516 516 HOH HOH . H 5 HOH A 17 518 518 HOH HOH . H 5 HOH A 18 519 519 HOH HOH . H 5 HOH A 19 520 520 HOH HOH . H 5 HOH A 20 521 521 HOH HOH . H 5 HOH A 21 522 522 HOH HOH . H 5 HOH A 22 523 523 HOH HOH . H 5 HOH A 23 524 524 HOH HOH . H 5 HOH A 24 525 525 HOH HOH . H 5 HOH A 25 526 526 HOH HOH . H 5 HOH A 26 527 527 HOH HOH . H 5 HOH A 27 528 528 HOH HOH . H 5 HOH A 28 529 529 HOH HOH . H 5 HOH A 29 530 530 HOH HOH . H 5 HOH A 30 531 531 HOH HOH . H 5 HOH A 31 532 532 HOH HOH . H 5 HOH A 32 533 533 HOH HOH . H 5 HOH A 33 534 534 HOH HOH . H 5 HOH A 34 535 535 HOH HOH . H 5 HOH A 35 536 536 HOH HOH . H 5 HOH A 36 537 537 HOH HOH . H 5 HOH A 37 538 538 HOH HOH . H 5 HOH A 38 539 539 HOH HOH . H 5 HOH A 39 540 540 HOH HOH . H 5 HOH A 40 541 541 HOH HOH . H 5 HOH A 41 542 542 HOH HOH . H 5 HOH A 42 543 543 HOH HOH . H 5 HOH A 43 544 544 HOH HOH . H 5 HOH A 44 545 545 HOH HOH . H 5 HOH A 45 546 546 HOH HOH . H 5 HOH A 46 547 547 HOH HOH . H 5 HOH A 47 548 548 HOH HOH . H 5 HOH A 48 549 549 HOH HOH . H 5 HOH A 49 550 550 HOH HOH . H 5 HOH A 50 551 551 HOH HOH . H 5 HOH A 51 552 552 HOH HOH . H 5 HOH A 52 553 553 HOH HOH . H 5 HOH A 53 554 554 HOH HOH . H 5 HOH A 54 556 556 HOH HOH . H 5 HOH A 55 557 557 HOH HOH . H 5 HOH A 56 558 558 HOH HOH . H 5 HOH A 57 559 559 HOH HOH . H 5 HOH A 58 560 560 HOH HOH . H 5 HOH A 59 561 561 HOH HOH . H 5 HOH A 60 562 562 HOH HOH . H 5 HOH A 61 563 563 HOH HOH . H 5 HOH A 62 564 564 HOH HOH . H 5 HOH A 63 565 565 HOH HOH . H 5 HOH A 64 566 566 HOH HOH . H 5 HOH A 65 567 567 HOH HOH . H 5 HOH A 66 568 568 HOH HOH . H 5 HOH A 67 569 569 HOH HOH . H 5 HOH A 68 570 570 HOH HOH . H 5 HOH A 69 571 571 HOH HOH . H 5 HOH A 70 572 572 HOH HOH . H 5 HOH A 71 573 573 HOH HOH . H 5 HOH A 72 574 574 HOH HOH . H 5 HOH A 73 575 575 HOH HOH . H 5 HOH A 74 576 576 HOH HOH . H 5 HOH A 75 577 577 HOH HOH . H 5 HOH A 76 578 578 HOH HOH . H 5 HOH A 77 579 579 HOH HOH . H 5 HOH A 78 580 580 HOH HOH . H 5 HOH A 79 581 581 HOH HOH . H 5 HOH A 80 582 582 HOH HOH . H 5 HOH A 81 583 583 HOH HOH . H 5 HOH A 82 584 584 HOH HOH . H 5 HOH A 83 585 585 HOH HOH . H 5 HOH A 84 586 586 HOH HOH . H 5 HOH A 85 587 587 HOH HOH . H 5 HOH A 86 588 588 HOH HOH . H 5 HOH A 87 589 589 HOH HOH . H 5 HOH A 88 590 590 HOH HOH . H 5 HOH A 89 591 591 HOH HOH . H 5 HOH A 90 592 592 HOH HOH . H 5 HOH A 91 593 593 HOH HOH . H 5 HOH A 92 594 594 HOH HOH . H 5 HOH A 93 595 595 HOH HOH . H 5 HOH A 94 596 596 HOH HOH . H 5 HOH A 95 597 597 HOH HOH . H 5 HOH A 96 598 598 HOH HOH . H 5 HOH A 97 599 599 HOH HOH . H 5 HOH A 98 600 600 HOH HOH . H 5 HOH A 99 601 601 HOH HOH . H 5 HOH A 100 602 602 HOH HOH . H 5 HOH A 101 603 603 HOH HOH . H 5 HOH A 102 604 604 HOH HOH . H 5 HOH A 103 605 605 HOH HOH . H 5 HOH A 104 606 606 HOH HOH . H 5 HOH A 105 607 607 HOH HOH . H 5 HOH A 106 608 608 HOH HOH . H 5 HOH A 107 609 609 HOH HOH . H 5 HOH A 108 610 610 HOH HOH . H 5 HOH A 109 611 611 HOH HOH . H 5 HOH A 110 612 612 HOH HOH . H 5 HOH A 111 613 613 HOH HOH . H 5 HOH A 112 614 614 HOH HOH . H 5 HOH A 113 615 615 HOH HOH . H 5 HOH A 114 616 616 HOH HOH . H 5 HOH A 115 617 617 HOH HOH . H 5 HOH A 116 618 618 HOH HOH . H 5 HOH A 117 619 619 HOH HOH . H 5 HOH A 118 620 620 HOH HOH . H 5 HOH A 119 621 621 HOH HOH . H 5 HOH A 120 622 622 HOH HOH . H 5 HOH A 121 623 623 HOH HOH . H 5 HOH A 122 624 624 HOH HOH . H 5 HOH A 123 625 625 HOH HOH . H 5 HOH A 124 626 626 HOH HOH . H 5 HOH A 125 627 627 HOH HOH . H 5 HOH A 126 628 628 HOH HOH . H 5 HOH A 127 629 629 HOH HOH . H 5 HOH A 128 630 630 HOH HOH . H 5 HOH A 129 631 631 HOH HOH . H 5 HOH A 130 632 632 HOH HOH . H 5 HOH A 131 633 633 HOH HOH . H 5 HOH A 132 634 634 HOH HOH . H 5 HOH A 133 635 635 HOH HOH . H 5 HOH A 134 636 636 HOH HOH . H 5 HOH A 135 637 637 HOH HOH . H 5 HOH A 136 638 638 HOH HOH . H 5 HOH A 137 639 639 HOH HOH . H 5 HOH A 138 640 640 HOH HOH . H 5 HOH A 139 641 641 HOH HOH . H 5 HOH A 140 642 642 HOH HOH . H 5 HOH A 141 643 643 HOH HOH . H 5 HOH A 142 644 644 HOH HOH . H 5 HOH A 143 645 645 HOH HOH . H 5 HOH A 144 646 646 HOH HOH . H 5 HOH A 145 647 647 HOH HOH . H 5 HOH A 146 648 648 HOH HOH . H 5 HOH A 147 649 649 HOH HOH . H 5 HOH A 148 650 650 HOH HOH . H 5 HOH A 149 651 651 HOH HOH . H 5 HOH A 150 652 652 HOH HOH . H 5 HOH A 151 653 653 HOH HOH . H 5 HOH A 152 654 654 HOH HOH . H 5 HOH A 153 655 655 HOH HOH . H 5 HOH A 154 656 656 HOH HOH . H 5 HOH A 155 657 657 HOH HOH . H 5 HOH A 156 658 658 HOH HOH . H 5 HOH A 157 659 659 HOH HOH . H 5 HOH A 158 660 660 HOH HOH . H 5 HOH A 159 661 661 HOH HOH . H 5 HOH A 160 662 662 HOH HOH . H 5 HOH A 161 663 663 HOH HOH . H 5 HOH A 162 664 664 HOH HOH . H 5 HOH A 163 665 665 HOH HOH . H 5 HOH A 164 666 666 HOH HOH . H 5 HOH A 165 667 667 HOH HOH . H 5 HOH A 166 668 668 HOH HOH . H 5 HOH A 167 669 669 HOH HOH . H 5 HOH A 168 670 670 HOH HOH . H 5 HOH A 169 671 671 HOH HOH . H 5 HOH A 170 672 672 HOH HOH . H 5 HOH A 171 673 673 HOH HOH . H 5 HOH A 172 674 674 HOH HOH . H 5 HOH A 173 675 675 HOH HOH . H 5 HOH A 174 676 676 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 4 _atom_site.Cartn_x 11.74 _atom_site.Cartn_y 10.902 _atom_site.Cartn_z 21.208 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 33.94 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 340 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #