data_1YXL # _model_server_result.job_id oIfacKlDnL-SXme4Lr4XNg _model_server_result.datetime_utc '2024-11-15 20:13:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1yxl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 1YXL # _exptl.entry_id 1YXL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1YXL _cell.length_a 42.017 _cell.length_b 42.017 _cell.length_c 64.451 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YXL _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 11 A CYS 11 1_555 A SG CYS 71 A CYS 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? disulf ? disulf2 A SG CYS 26 A CYS 27 1_555 A SG CYS 118 A CYS 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf3 A SG CYS 28 A CYS 29 1_555 A SG CYS 44 A CYS 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf4 A SG CYS 43 A CYS 44 1_555 A SG CYS 99 A CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? disulf ? disulf5 A SG CYS 50 A CYS 51 1_555 A SG CYS 92 A CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? disulf ? disulf6 A SG CYS 60 A CYS 61 1_555 A SG CYS 85 A CYS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf7 A SG CYS 78 A CYS 79 1_555 A SG CYS 90 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc1 A O TYR 27 A TYR 28 1_555 B CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.587 ? metalc ? metalc2 A O GLY 29 A GLY 30 1_555 B CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc3 A O GLY 31 A GLY 32 1_555 B CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc4 A OD2 ASP 48 A ASP 49 1_555 B CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.542 ? metalc ? metalc5 A OD1 ASP 48 A ASP 49 1_555 B CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.572 ? metalc ? metalc6 B CA CA . A CA 201 1_555 D O ACY . A ACY 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? metalc ? metalc7 B CA CA . A CA 201 1_555 E O HOH . A HOH 450 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 267 n n P O2 PO4 sing 268 n n P O3 PO4 sing 269 n n P O4 PO4 sing 270 n n # _atom_sites.entry_id 1YXL _atom_sites.fract_transf_matrix[1][1] 0.0238 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0238 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015516 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 201 201 CA CA . C 3 PO4 A 1 401 401 PO4 PO4 . D 4 ACY A 1 301 301 ACY ACY . E 5 HOH A 1 402 1 HOH HOH . E 5 HOH A 2 403 2 HOH HOH . E 5 HOH A 3 404 3 HOH HOH . E 5 HOH A 4 405 4 HOH HOH . E 5 HOH A 5 406 5 HOH HOH . E 5 HOH A 6 407 6 HOH HOH . E 5 HOH A 7 408 7 HOH HOH . E 5 HOH A 8 409 8 HOH HOH . E 5 HOH A 9 410 9 HOH HOH . E 5 HOH A 10 411 10 HOH HOH . E 5 HOH A 11 412 11 HOH HOH . E 5 HOH A 12 413 12 HOH HOH . E 5 HOH A 13 414 13 HOH HOH . E 5 HOH A 14 415 14 HOH HOH . E 5 HOH A 15 416 15 HOH HOH . E 5 HOH A 16 417 16 HOH HOH . E 5 HOH A 17 418 17 HOH HOH . E 5 HOH A 18 419 18 HOH HOH . E 5 HOH A 19 420 19 HOH HOH . E 5 HOH A 20 421 20 HOH HOH . E 5 HOH A 21 422 21 HOH HOH . E 5 HOH A 22 423 22 HOH HOH . E 5 HOH A 23 424 23 HOH HOH . E 5 HOH A 24 425 24 HOH HOH . E 5 HOH A 25 426 25 HOH HOH . E 5 HOH A 26 427 26 HOH HOH . E 5 HOH A 27 428 27 HOH HOH . E 5 HOH A 28 429 28 HOH HOH . E 5 HOH A 29 430 29 HOH HOH . E 5 HOH A 30 431 30 HOH HOH . E 5 HOH A 31 432 31 HOH HOH . E 5 HOH A 32 433 32 HOH HOH . E 5 HOH A 33 434 33 HOH HOH . E 5 HOH A 34 435 34 HOH HOH . E 5 HOH A 35 436 35 HOH HOH . E 5 HOH A 36 437 36 HOH HOH . E 5 HOH A 37 438 37 HOH HOH . E 5 HOH A 38 439 38 HOH HOH . E 5 HOH A 39 440 39 HOH HOH . E 5 HOH A 40 441 40 HOH HOH . E 5 HOH A 41 442 41 HOH HOH . E 5 HOH A 42 443 42 HOH HOH . E 5 HOH A 43 444 43 HOH HOH . E 5 HOH A 44 445 44 HOH HOH . E 5 HOH A 45 446 45 HOH HOH . E 5 HOH A 46 447 46 HOH HOH . E 5 HOH A 47 448 47 HOH HOH . E 5 HOH A 48 449 48 HOH HOH . E 5 HOH A 49 450 49 HOH HOH . E 5 HOH A 50 451 50 HOH HOH . E 5 HOH A 51 452 51 HOH HOH . E 5 HOH A 52 453 52 HOH HOH . E 5 HOH A 53 454 53 HOH HOH . E 5 HOH A 54 455 54 HOH HOH . E 5 HOH A 55 456 55 HOH HOH . E 5 HOH A 56 457 56 HOH HOH . E 5 HOH A 57 458 57 HOH HOH . E 5 HOH A 58 459 58 HOH HOH . E 5 HOH A 59 460 59 HOH HOH . E 5 HOH A 60 461 60 HOH HOH . E 5 HOH A 61 462 61 HOH HOH . E 5 HOH A 62 463 62 HOH HOH . E 5 HOH A 63 464 63 HOH HOH . E 5 HOH A 64 465 64 HOH HOH . E 5 HOH A 65 466 65 HOH HOH . E 5 HOH A 66 467 66 HOH HOH . E 5 HOH A 67 468 67 HOH HOH . E 5 HOH A 68 469 68 HOH HOH . E 5 HOH A 69 470 69 HOH HOH . E 5 HOH A 70 471 70 HOH HOH . E 5 HOH A 71 472 71 HOH HOH . E 5 HOH A 72 473 72 HOH HOH . E 5 HOH A 73 474 73 HOH HOH . E 5 HOH A 74 475 74 HOH HOH . E 5 HOH A 75 476 75 HOH HOH . E 5 HOH A 76 477 76 HOH HOH . E 5 HOH A 77 478 77 HOH HOH . E 5 HOH A 78 479 78 HOH HOH . E 5 HOH A 79 480 79 HOH HOH . E 5 HOH A 80 481 80 HOH HOH . E 5 HOH A 81 482 81 HOH HOH . E 5 HOH A 82 483 82 HOH HOH . E 5 HOH A 83 484 83 HOH HOH . E 5 HOH A 84 485 84 HOH HOH . E 5 HOH A 85 486 85 HOH HOH . E 5 HOH A 86 487 86 HOH HOH . E 5 HOH A 87 488 87 HOH HOH . E 5 HOH A 88 489 88 HOH HOH . E 5 HOH A 89 490 89 HOH HOH . E 5 HOH A 90 491 90 HOH HOH . E 5 HOH A 91 492 91 HOH HOH . E 5 HOH A 92 493 92 HOH HOH . E 5 HOH A 93 494 93 HOH HOH . E 5 HOH A 94 495 94 HOH HOH . E 5 HOH A 95 496 95 HOH HOH . E 5 HOH A 96 497 96 HOH HOH . E 5 HOH A 97 498 97 HOH HOH . E 5 HOH A 98 499 98 HOH HOH . E 5 HOH A 99 500 99 HOH HOH . E 5 HOH A 100 501 100 HOH HOH . E 5 HOH A 101 502 101 HOH HOH . E 5 HOH A 102 503 102 HOH HOH . E 5 HOH A 103 504 103 HOH HOH . E 5 HOH A 104 505 104 HOH HOH . E 5 HOH A 105 506 105 HOH HOH . E 5 HOH A 106 507 106 HOH HOH . E 5 HOH A 107 508 107 HOH HOH . E 5 HOH A 108 509 108 HOH HOH . E 5 HOH A 109 510 109 HOH HOH . E 5 HOH A 110 511 110 HOH HOH . E 5 HOH A 111 512 111 HOH HOH . E 5 HOH A 112 513 112 HOH HOH . E 5 HOH A 113 514 113 HOH HOH . E 5 HOH A 114 515 114 HOH HOH . E 5 HOH A 115 516 115 HOH HOH . E 5 HOH A 116 517 116 HOH HOH . E 5 HOH A 117 518 117 HOH HOH . E 5 HOH A 118 519 118 HOH HOH . E 5 HOH A 119 520 119 HOH HOH . E 5 HOH A 120 521 120 HOH HOH . E 5 HOH A 121 522 121 HOH HOH . E 5 HOH A 122 523 122 HOH HOH . E 5 HOH A 123 524 123 HOH HOH . E 5 HOH A 124 525 124 HOH HOH . E 5 HOH A 125 526 125 HOH HOH . E 5 HOH A 126 527 126 HOH HOH . E 5 HOH A 127 528 127 HOH HOH . E 5 HOH A 128 529 128 HOH HOH . E 5 HOH A 129 530 129 HOH HOH . E 5 HOH A 130 531 130 HOH HOH . E 5 HOH A 131 532 131 HOH HOH . E 5 HOH A 132 533 132 HOH HOH . E 5 HOH A 133 534 133 HOH HOH . E 5 HOH A 134 535 134 HOH HOH . E 5 HOH A 135 536 135 HOH HOH . E 5 HOH A 136 537 136 HOH HOH . E 5 HOH A 137 538 137 HOH HOH . E 5 HOH A 138 539 138 HOH HOH . E 5 HOH A 139 540 139 HOH HOH . E 5 HOH A 140 541 140 HOH HOH . E 5 HOH A 141 542 141 HOH HOH . E 5 HOH A 142 543 142 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . C 3 52.158 46.102 -0.912 1 28.53 ? P PO4 401 A 1 HETATM 2 O O1 PO4 . . . C 3 53.537 45.801 -0.342 1 25.67 ? O1 PO4 401 A 1 HETATM 3 O O2 PO4 . . . C 3 51.927 47.588 -1.09 1 27.96 ? O2 PO4 401 A 1 HETATM 4 O O3 PO4 . . . C 3 52.089 45.415 -2.272 1 28.78 ? O3 PO4 401 A 1 HETATM 5 O O4 PO4 . . . C 3 51.095 45.48 -0.006 1 21.91 ? O4 PO4 401 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 5 #