data_1YXS
#
_model_server_result.job_id            aNpOcNY4FB00O07gTed4vA 
_model_server_result.datetime_utc      '2024-10-18 00:24:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1yxs 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":1001}' 
#
_entry.id    1YXS 
#
_exptl.entry_id    1YXS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              69.085 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            IMIDAZOLE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1YXS 
_cell.length_a            99.315 
_cell.length_b            99.315 
_cell.length_c            80.561 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1YXS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        170 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C3 H5 N2 1' 
_chem_comp.formula_weight    69.085 
_chem_comp.id                IMD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              IMIDAZOLE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 IMD sing 173 n y 
N1 C5 IMD sing 174 n y 
N1 HN1 IMD sing 175 n n 
C2 N3 IMD doub 176 n y 
C2 H2 IMD sing 177 n n 
N3 C4 IMD sing 178 n y 
N3 HN3 IMD sing 179 n n 
C4 C5 IMD doub 180 n y 
C4 H4 IMD sing 181 n n 
C5 H5 IMD sing 182 n n 
#
_atom_sites.entry_id                     1YXS 
_atom_sites.fract_transf_matrix[1][1]    0.010069 
_atom_sites.fract_transf_matrix[1][2]    0.005813 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011627 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012413 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 IMD A 1 1001 1 IMD IMD . 
C 3 HOH A 1 1002 1 HOH HOH . 
C 3 HOH A 2 1003 2 HOH HOH . 
C 3 HOH A 3 1004 3 HOH HOH . 
C 3 HOH A 4 1005 4 HOH HOH . 
C 3 HOH A 5 1006 5 HOH HOH . 
C 3 HOH A 6 1007 6 HOH HOH . 
C 3 HOH A 7 1008 7 HOH HOH . 
C 3 HOH A 8 1009 8 HOH HOH . 
C 3 HOH A 9 1010 9 HOH HOH . 
C 3 HOH A 10 1011 10 HOH HOH . 
C 3 HOH A 11 1012 11 HOH HOH . 
C 3 HOH A 12 1013 12 HOH HOH . 
C 3 HOH A 13 1014 13 HOH HOH . 
C 3 HOH A 14 1015 14 HOH HOH . 
C 3 HOH A 15 1016 15 HOH HOH . 
C 3 HOH A 16 1017 16 HOH HOH . 
C 3 HOH A 17 1018 17 HOH HOH . 
C 3 HOH A 18 1019 18 HOH HOH . 
C 3 HOH A 19 1020 19 HOH HOH . 
C 3 HOH A 20 1021 20 HOH HOH . 
C 3 HOH A 21 1022 21 HOH HOH . 
C 3 HOH A 22 1023 22 HOH HOH . 
C 3 HOH A 23 1024 23 HOH HOH . 
C 3 HOH A 24 1025 24 HOH HOH . 
C 3 HOH A 25 1026 25 HOH HOH . 
C 3 HOH A 26 1027 26 HOH HOH . 
C 3 HOH A 27 1028 27 HOH HOH . 
C 3 HOH A 28 1029 28 HOH HOH . 
C 3 HOH A 29 1030 29 HOH HOH . 
C 3 HOH A 30 1031 30 HOH HOH . 
C 3 HOH A 31 1032 31 HOH HOH . 
C 3 HOH A 32 1033 32 HOH HOH . 
C 3 HOH A 33 1034 33 HOH HOH . 
C 3 HOH A 34 1035 34 HOH HOH . 
C 3 HOH A 35 1036 35 HOH HOH . 
C 3 HOH A 36 1037 36 HOH HOH . 
C 3 HOH A 37 1038 37 HOH HOH . 
C 3 HOH A 38 1039 38 HOH HOH . 
C 3 HOH A 39 1040 39 HOH HOH . 
C 3 HOH A 40 1041 40 HOH HOH . 
C 3 HOH A 41 1042 41 HOH HOH . 
C 3 HOH A 42 1043 42 HOH HOH . 
C 3 HOH A 43 1044 43 HOH HOH . 
C 3 HOH A 44 1045 44 HOH HOH . 
C 3 HOH A 45 1046 45 HOH HOH . 
C 3 HOH A 46 1047 46 HOH HOH . 
C 3 HOH A 47 1048 47 HOH HOH . 
C 3 HOH A 48 1049 48 HOH HOH . 
C 3 HOH A 49 1050 49 HOH HOH . 
C 3 HOH A 50 1051 50 HOH HOH . 
C 3 HOH A 51 1052 51 HOH HOH . 
C 3 HOH A 52 1053 52 HOH HOH . 
C 3 HOH A 53 1054 53 HOH HOH . 
C 3 HOH A 54 1055 54 HOH HOH . 
C 3 HOH A 55 1056 55 HOH HOH . 
C 3 HOH A 56 1057 56 HOH HOH . 
C 3 HOH A 57 1058 57 HOH HOH . 
C 3 HOH A 58 1059 58 HOH HOH . 
C 3 HOH A 59 1060 59 HOH HOH . 
C 3 HOH A 60 1061 60 HOH HOH . 
C 3 HOH A 61 1062 61 HOH HOH . 
C 3 HOH A 62 1063 62 HOH HOH . 
C 3 HOH A 63 1064 63 HOH HOH . 
C 3 HOH A 64 1065 64 HOH HOH . 
C 3 HOH A 65 1066 65 HOH HOH . 
C 3 HOH A 66 1067 66 HOH HOH . 
C 3 HOH A 67 1068 67 HOH HOH . 
C 3 HOH A 68 1069 68 HOH HOH . 
C 3 HOH A 69 1070 69 HOH HOH . 
C 3 HOH A 70 1071 70 HOH HOH . 
C 3 HOH A 71 1072 71 HOH HOH . 
C 3 HOH A 72 1073 72 HOH HOH . 
C 3 HOH A 73 1074 73 HOH HOH . 
C 3 HOH A 74 1075 74 HOH HOH . 
C 3 HOH A 75 1076 75 HOH HOH . 
C 3 HOH A 76 1077 76 HOH HOH . 
C 3 HOH A 77 1078 77 HOH HOH . 
C 3 HOH A 78 1079 78 HOH HOH . 
C 3 HOH A 79 1080 79 HOH HOH . 
C 3 HOH A 80 1081 80 HOH HOH . 
C 3 HOH A 81 1082 81 HOH HOH . 
C 3 HOH A 82 1083 82 HOH HOH . 
C 3 HOH A 83 1084 83 HOH HOH . 
C 3 HOH A 84 1085 84 HOH HOH . 
C 3 HOH A 85 1086 85 HOH HOH . 
C 3 HOH A 86 1087 86 HOH HOH . 
C 3 HOH A 87 1088 87 HOH HOH . 
C 3 HOH A 88 1089 88 HOH HOH . 
C 3 HOH A 89 1090 89 HOH HOH . 
C 3 HOH A 90 1091 90 HOH HOH . 
C 3 HOH A 91 1092 91 HOH HOH . 
C 3 HOH A 92 1093 92 HOH HOH . 
C 3 HOH A 93 1094 93 HOH HOH . 
C 3 HOH A 94 1095 94 HOH HOH . 
C 3 HOH A 95 1096 95 HOH HOH . 
C 3 HOH A 96 1097 96 HOH HOH . 
C 3 HOH A 97 1098 97 HOH HOH . 
C 3 HOH A 98 1099 98 HOH HOH . 
C 3 HOH A 99 1100 99 HOH HOH . 
C 3 HOH A 100 1101 100 HOH HOH . 
C 3 HOH A 101 1102 101 HOH HOH . 
C 3 HOH A 102 1103 102 HOH HOH . 
C 3 HOH A 103 1104 103 HOH HOH . 
C 3 HOH A 104 1105 104 HOH HOH . 
C 3 HOH A 105 1106 105 HOH HOH . 
C 3 HOH A 106 1107 106 HOH HOH . 
C 3 HOH A 107 1108 107 HOH HOH . 
C 3 HOH A 108 1109 108 HOH HOH . 
C 3 HOH A 109 1110 109 HOH HOH . 
C 3 HOH A 110 1111 110 HOH HOH . 
C 3 HOH A 111 1112 111 HOH HOH . 
C 3 HOH A 112 1113 112 HOH HOH . 
C 3 HOH A 113 1114 113 HOH HOH . 
C 3 HOH A 114 1115 114 HOH HOH . 
C 3 HOH A 115 1116 115 HOH HOH . 
C 3 HOH A 116 1117 116 HOH HOH . 
C 3 HOH A 117 1118 117 HOH HOH . 
C 3 HOH A 118 1119 118 HOH HOH . 
C 3 HOH A 119 1120 119 HOH HOH . 
C 3 HOH A 120 1121 120 HOH HOH . 
C 3 HOH A 121 1122 121 HOH HOH . 
C 3 HOH A 122 1123 122 HOH HOH . 
C 3 HOH A 123 1124 123 HOH HOH . 
C 3 HOH A 124 1125 124 HOH HOH . 
C 3 HOH A 125 1126 125 HOH HOH . 
C 3 HOH A 126 1127 126 HOH HOH . 
C 3 HOH A 127 1128 127 HOH HOH . 
C 3 HOH A 128 1129 128 HOH HOH . 
C 3 HOH A 129 1130 129 HOH HOH . 
C 3 HOH A 130 1131 130 HOH HOH . 
C 3 HOH A 131 1132 131 HOH HOH . 
C 3 HOH A 132 1133 132 HOH HOH . 
C 3 HOH A 133 1134 133 HOH HOH . 
C 3 HOH A 134 1135 134 HOH HOH . 
C 3 HOH A 135 1136 135 HOH HOH . 
C 3 HOH A 136 1137 136 HOH HOH . 
C 3 HOH A 137 1138 137 HOH HOH . 
C 3 HOH A 138 1139 138 HOH HOH . 
C 3 HOH A 139 1140 139 HOH HOH . 
C 3 HOH A 140 1141 140 HOH HOH . 
C 3 HOH A 141 1142 141 HOH HOH . 
C 3 HOH A 142 1143 142 HOH HOH . 
C 3 HOH A 143 1144 143 HOH HOH . 
C 3 HOH A 144 1145 144 HOH HOH . 
C 3 HOH A 145 1146 145 HOH HOH . 
C 3 HOH A 146 1147 146 HOH HOH . 
C 3 HOH A 147 1148 147 HOH HOH . 
C 3 HOH A 148 1149 148 HOH HOH . 
C 3 HOH A 149 1150 149 HOH HOH . 
C 3 HOH A 150 1151 150 HOH HOH . 
C 3 HOH A 151 1152 151 HOH HOH . 
C 3 HOH A 152 1153 152 HOH HOH . 
C 3 HOH A 153 1154 153 HOH HOH . 
C 3 HOH A 154 1155 154 HOH HOH . 
C 3 HOH A 155 1156 155 HOH HOH . 
C 3 HOH A 156 1157 156 HOH HOH . 
C 3 HOH A 157 1158 157 HOH HOH . 
C 3 HOH A 158 1159 158 HOH HOH . 
C 3 HOH A 159 1160 159 HOH HOH . 
C 3 HOH A 160 1161 160 HOH HOH . 
C 3 HOH A 161 1162 161 HOH HOH . 
C 3 HOH A 162 1163 162 HOH HOH . 
C 3 HOH A 163 1164 163 HOH HOH . 
C 3 HOH A 164 1165 164 HOH HOH . 
C 3 HOH A 165 1166 165 HOH HOH . 
C 3 HOH A 166 1167 166 HOH HOH . 
C 3 HOH A 167 1168 167 HOH HOH . 
C 3 HOH A 168 1169 168 HOH HOH . 
C 3 HOH A 169 1170 169 HOH HOH . 
C 3 HOH A 170 1171 170 HOH HOH . 
C 3 HOH A 171 1172 171 HOH HOH . 
C 3 HOH A 172 1173 172 HOH HOH . 
C 3 HOH A 173 1174 173 HOH HOH . 
C 3 HOH A 174 1175 174 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 IMD . . . B 2 66.069 29.069 12.447 1 55.06 ? N1 IMD 1001 A 1 
HETATM 2 C C2 IMD . . . B 2 66.462 30.297 12.837 1 54.16 ? C2 IMD 1001 A 1 
HETATM 3 N N3 IMD . . . B 2 66.653 30.285 14.178 1 53.08 ? N3 IMD 1001 A 1 
HETATM 4 C C4 IMD . . . B 2 66.394 29.047 14.637 1 53.72 ? C4 IMD 1001 A 1 
HETATM 5 C C5 IMD . . . B 2 66.026 28.278 13.54 1 55.2 ? C5 IMD 1001 A 1 
#
_model_server_stats.io_time_ms              62 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           282 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           5 
#