data_1YXV # _model_server_result.job_id hv1cfEwNZNAXN9RmkfZN3Q _model_server_result.datetime_utc '2024-10-18 00:31:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1yxv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":322}' # _entry.id 1YXV # _exptl.entry_id 1YXV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 69.085 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description IMIDAZOLE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1YXV _cell.length_a 96.592 _cell.length_b 96.592 _cell.length_c 80.556 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YXV _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H5 N2 1' _chem_comp.formula_weight 69.085 _chem_comp.id IMD _chem_comp.mon_nstd_flag . _chem_comp.name IMIDAZOLE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 IMD sing 173 n y N1 C5 IMD sing 174 n y N1 HN1 IMD sing 175 n n C2 N3 IMD doub 176 n y C2 H2 IMD sing 177 n n N3 C4 IMD sing 178 n y N3 HN3 IMD sing 179 n n C4 C5 IMD doub 180 n y C4 H4 IMD sing 181 n n C5 H5 IMD sing 182 n n # _atom_sites.entry_id 1YXV _atom_sites.fract_transf_matrix[1][1] 0.010353 _atom_sites.fract_transf_matrix[1][2] 0.005977 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011954 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012414 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IMD A 1 322 171 IMD IMD . C 3 LI6 A 1 323 172 LI6 LI6 . D 4 HOH A 1 324 1 HOH HOH . D 4 HOH A 2 325 2 HOH HOH . D 4 HOH A 3 326 3 HOH HOH . D 4 HOH A 4 327 4 HOH HOH . D 4 HOH A 5 328 5 HOH HOH . D 4 HOH A 6 329 6 HOH HOH . D 4 HOH A 7 330 7 HOH HOH . D 4 HOH A 8 331 8 HOH HOH . D 4 HOH A 9 332 9 HOH HOH . D 4 HOH A 10 333 10 HOH HOH . D 4 HOH A 11 334 11 HOH HOH . D 4 HOH A 12 335 12 HOH HOH . D 4 HOH A 13 336 13 HOH HOH . D 4 HOH A 14 337 14 HOH HOH . D 4 HOH A 15 338 15 HOH HOH . D 4 HOH A 16 339 16 HOH HOH . D 4 HOH A 17 340 17 HOH HOH . D 4 HOH A 18 341 18 HOH HOH . D 4 HOH A 19 342 19 HOH HOH . D 4 HOH A 20 343 20 HOH HOH . D 4 HOH A 21 344 21 HOH HOH . D 4 HOH A 22 345 22 HOH HOH . D 4 HOH A 23 346 23 HOH HOH . D 4 HOH A 24 347 24 HOH HOH . D 4 HOH A 25 348 25 HOH HOH . D 4 HOH A 26 349 26 HOH HOH . D 4 HOH A 27 350 27 HOH HOH . D 4 HOH A 28 351 28 HOH HOH . D 4 HOH A 29 352 29 HOH HOH . D 4 HOH A 30 353 30 HOH HOH . D 4 HOH A 31 354 31 HOH HOH . D 4 HOH A 32 355 32 HOH HOH . D 4 HOH A 33 356 33 HOH HOH . D 4 HOH A 34 357 34 HOH HOH . D 4 HOH A 35 358 35 HOH HOH . D 4 HOH A 36 359 36 HOH HOH . D 4 HOH A 37 360 37 HOH HOH . D 4 HOH A 38 361 38 HOH HOH . D 4 HOH A 39 362 39 HOH HOH . D 4 HOH A 40 363 40 HOH HOH . D 4 HOH A 41 364 41 HOH HOH . D 4 HOH A 42 365 42 HOH HOH . D 4 HOH A 43 366 43 HOH HOH . D 4 HOH A 44 367 44 HOH HOH . D 4 HOH A 45 368 45 HOH HOH . D 4 HOH A 46 369 46 HOH HOH . D 4 HOH A 47 370 47 HOH HOH . D 4 HOH A 48 371 48 HOH HOH . D 4 HOH A 49 372 49 HOH HOH . D 4 HOH A 50 373 50 HOH HOH . D 4 HOH A 51 374 51 HOH HOH . D 4 HOH A 52 375 52 HOH HOH . D 4 HOH A 53 376 53 HOH HOH . D 4 HOH A 54 377 54 HOH HOH . D 4 HOH A 55 378 55 HOH HOH . D 4 HOH A 56 379 56 HOH HOH . D 4 HOH A 57 380 57 HOH HOH . D 4 HOH A 58 381 58 HOH HOH . D 4 HOH A 59 382 59 HOH HOH . D 4 HOH A 60 383 60 HOH HOH . D 4 HOH A 61 384 61 HOH HOH . D 4 HOH A 62 385 62 HOH HOH . D 4 HOH A 63 386 63 HOH HOH . D 4 HOH A 64 387 64 HOH HOH . D 4 HOH A 65 388 65 HOH HOH . D 4 HOH A 66 389 66 HOH HOH . D 4 HOH A 67 390 67 HOH HOH . D 4 HOH A 68 391 68 HOH HOH . D 4 HOH A 69 392 69 HOH HOH . D 4 HOH A 70 393 70 HOH HOH . D 4 HOH A 71 394 71 HOH HOH . D 4 HOH A 72 395 72 HOH HOH . D 4 HOH A 73 396 73 HOH HOH . D 4 HOH A 74 397 74 HOH HOH . D 4 HOH A 75 398 75 HOH HOH . D 4 HOH A 76 399 76 HOH HOH . D 4 HOH A 77 400 77 HOH HOH . D 4 HOH A 78 401 78 HOH HOH . D 4 HOH A 79 402 79 HOH HOH . D 4 HOH A 80 403 80 HOH HOH . D 4 HOH A 81 404 81 HOH HOH . D 4 HOH A 82 405 82 HOH HOH . D 4 HOH A 83 406 83 HOH HOH . D 4 HOH A 84 407 84 HOH HOH . D 4 HOH A 85 408 85 HOH HOH . D 4 HOH A 86 409 86 HOH HOH . D 4 HOH A 87 410 87 HOH HOH . D 4 HOH A 88 411 88 HOH HOH . D 4 HOH A 89 412 89 HOH HOH . D 4 HOH A 90 413 90 HOH HOH . D 4 HOH A 91 414 91 HOH HOH . D 4 HOH A 92 415 92 HOH HOH . D 4 HOH A 93 416 93 HOH HOH . D 4 HOH A 94 417 94 HOH HOH . D 4 HOH A 95 418 95 HOH HOH . D 4 HOH A 96 419 96 HOH HOH . D 4 HOH A 97 420 97 HOH HOH . D 4 HOH A 98 421 98 HOH HOH . D 4 HOH A 99 422 99 HOH HOH . D 4 HOH A 100 423 100 HOH HOH . D 4 HOH A 101 424 101 HOH HOH . D 4 HOH A 102 425 102 HOH HOH . D 4 HOH A 103 426 103 HOH HOH . D 4 HOH A 104 427 104 HOH HOH . D 4 HOH A 105 428 105 HOH HOH . D 4 HOH A 106 429 106 HOH HOH . D 4 HOH A 107 430 107 HOH HOH . D 4 HOH A 108 431 108 HOH HOH . D 4 HOH A 109 432 109 HOH HOH . D 4 HOH A 110 433 110 HOH HOH . D 4 HOH A 111 434 111 HOH HOH . D 4 HOH A 112 435 112 HOH HOH . D 4 HOH A 113 436 113 HOH HOH . D 4 HOH A 114 437 114 HOH HOH . D 4 HOH A 115 438 115 HOH HOH . D 4 HOH A 116 439 116 HOH HOH . D 4 HOH A 117 440 117 HOH HOH . D 4 HOH A 118 441 118 HOH HOH . D 4 HOH A 119 442 119 HOH HOH . D 4 HOH A 120 443 120 HOH HOH . D 4 HOH A 121 444 121 HOH HOH . D 4 HOH A 122 445 122 HOH HOH . D 4 HOH A 123 446 123 HOH HOH . D 4 HOH A 124 447 124 HOH HOH . D 4 HOH A 125 448 125 HOH HOH . D 4 HOH A 126 449 126 HOH HOH . D 4 HOH A 127 450 127 HOH HOH . D 4 HOH A 128 451 128 HOH HOH . D 4 HOH A 129 452 129 HOH HOH . D 4 HOH A 130 453 130 HOH HOH . D 4 HOH A 131 454 131 HOH HOH . D 4 HOH A 132 455 132 HOH HOH . D 4 HOH A 133 456 133 HOH HOH . D 4 HOH A 134 457 134 HOH HOH . D 4 HOH A 135 458 135 HOH HOH . D 4 HOH A 136 459 136 HOH HOH . D 4 HOH A 137 460 137 HOH HOH . D 4 HOH A 138 461 138 HOH HOH . D 4 HOH A 139 462 139 HOH HOH . D 4 HOH A 140 463 140 HOH HOH . D 4 HOH A 141 464 141 HOH HOH . D 4 HOH A 142 465 142 HOH HOH . D 4 HOH A 143 466 143 HOH HOH . D 4 HOH A 144 467 144 HOH HOH . D 4 HOH A 145 468 145 HOH HOH . D 4 HOH A 146 469 146 HOH HOH . D 4 HOH A 147 470 147 HOH HOH . D 4 HOH A 148 471 148 HOH HOH . D 4 HOH A 149 472 149 HOH HOH . D 4 HOH A 150 473 150 HOH HOH . D 4 HOH A 151 474 151 HOH HOH . D 4 HOH A 152 475 152 HOH HOH . D 4 HOH A 153 476 153 HOH HOH . D 4 HOH A 154 477 154 HOH HOH . D 4 HOH A 155 478 155 HOH HOH . D 4 HOH A 156 479 156 HOH HOH . D 4 HOH A 157 480 157 HOH HOH . D 4 HOH A 158 481 158 HOH HOH . D 4 HOH A 159 482 159 HOH HOH . D 4 HOH A 160 483 160 HOH HOH . D 4 HOH A 161 484 161 HOH HOH . D 4 HOH A 162 485 162 HOH HOH . D 4 HOH A 163 486 163 HOH HOH . D 4 HOH A 164 487 164 HOH HOH . D 4 HOH A 165 488 165 HOH HOH . D 4 HOH A 166 489 166 HOH HOH . D 4 HOH A 167 490 167 HOH HOH . D 4 HOH A 168 491 168 HOH HOH . D 4 HOH A 169 492 169 HOH HOH . D 4 HOH A 170 493 170 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 IMD . . . B 2 65.643 29.171 14.502 1 44.7 ? N1 IMD 322 A 1 HETATM 2 C C2 IMD . . . B 2 65.327 28.62 13.31 1 44.33 ? C2 IMD 322 A 1 HETATM 3 N N3 IMD . . . B 2 65.756 29.443 12.33 1 43.97 ? N3 IMD 322 A 1 HETATM 4 C C4 IMD . . . B 2 66.343 30.513 12.902 1 44.97 ? C4 IMD 322 A 1 HETATM 5 C C5 IMD . . . B 2 66.269 30.344 14.276 1 44.65 ? C5 IMD 322 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 5 #