data_1YXW
#
_model_server_result.job_id            jZpyR-Heapp__pcBQ1nD3w 
_model_server_result.datetime_utc      '2025-02-28 16:56:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1yxw 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":5294}' 
#
_entry.id    1YXW 
#
_exptl.entry_id    1YXW 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              204.225 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            TRYPTOPHAN 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1YXW 
_cell.length_a            66.757 
_cell.length_b            79.183 
_cell.length_c            90.265 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1YXW 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B C TYR . A TYR 5292 1_555 C N GLU . A GLU 5293 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale2 C C GLU . A GLU 5293 1_555 D N TRP . A TRP 5294 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
#
_chem_comp.formula           'C11 H12 N2 O2' 
_chem_comp.formula_weight    204.225 
_chem_comp.id                TRP 
_chem_comp.mon_nstd_flag     y 
_chem_comp.name              TRYPTOPHAN 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA TRP sing 306 n n 
N H TRP sing 307 n n 
N H2 TRP sing 308 n n 
CA C TRP sing 309 n n 
CA CB TRP sing 310 n n 
CA HA TRP sing 311 n n 
C O TRP doub 312 n n 
C OXT TRP sing 313 n n 
CB CG TRP sing 314 n n 
CB HB2 TRP sing 315 n n 
CB HB3 TRP sing 316 n n 
CG CD1 TRP doub 317 n y 
CG CD2 TRP sing 318 n y 
CD1 NE1 TRP sing 319 n y 
CD1 HD1 TRP sing 320 n n 
CD2 CE2 TRP doub 321 n y 
CD2 CE3 TRP sing 322 n y 
NE1 CE2 TRP sing 323 n y 
NE1 HE1 TRP sing 324 n n 
CE2 CZ2 TRP sing 325 n y 
CE3 CZ3 TRP doub 326 n y 
CE3 HE3 TRP sing 327 n n 
CZ2 CH2 TRP doub 328 n y 
CZ2 HZ2 TRP sing 329 n n 
CZ3 CH2 TRP sing 330 n y 
CZ3 HZ3 TRP sing 331 n n 
CH2 HH2 TRP sing 332 n n 
OXT HXT TRP sing 333 n n 
#
_atom_sites.entry_id                     1YXW 
_atom_sites.fract_transf_matrix[1][1]    0.01498 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012629 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011078 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 TYR A 1 5292 5292 TYR TYR . 
C 3 GLU A 1 5293 5293 GLU GLU . 
D 4 TRP A 1 5294 5294 TRP TRP . 
E 5 HOH A 1 1 1 HOH TIP . 
E 5 HOH A 2 2 2 HOH TIP . 
E 5 HOH A 3 3 3 HOH TIP . 
E 5 HOH A 4 4 4 HOH TIP . 
E 5 HOH A 5 5 5 HOH TIP . 
E 5 HOH A 6 6 6 HOH TIP . 
E 5 HOH A 7 7 7 HOH TIP . 
E 5 HOH A 8 8 8 HOH TIP . 
E 5 HOH A 9 9 9 HOH TIP . 
E 5 HOH A 10 10 10 HOH TIP . 
E 5 HOH A 11 11 11 HOH TIP . 
E 5 HOH A 12 12 12 HOH TIP . 
E 5 HOH A 13 13 13 HOH TIP . 
E 5 HOH A 14 14 14 HOH TIP . 
E 5 HOH A 15 15 15 HOH TIP . 
E 5 HOH A 16 16 16 HOH TIP . 
E 5 HOH A 17 17 17 HOH TIP . 
E 5 HOH A 18 18 18 HOH TIP . 
E 5 HOH A 19 19 19 HOH TIP . 
E 5 HOH A 20 20 20 HOH TIP . 
E 5 HOH A 21 21 21 HOH TIP . 
E 5 HOH A 22 22 22 HOH TIP . 
E 5 HOH A 23 23 23 HOH TIP . 
E 5 HOH A 24 24 24 HOH TIP . 
E 5 HOH A 25 25 25 HOH TIP . 
E 5 HOH A 26 26 26 HOH TIP . 
E 5 HOH A 27 27 27 HOH TIP . 
E 5 HOH A 28 28 28 HOH TIP . 
E 5 HOH A 29 29 29 HOH TIP . 
E 5 HOH A 30 30 30 HOH TIP . 
E 5 HOH A 31 31 31 HOH TIP . 
E 5 HOH A 32 32 32 HOH TIP . 
E 5 HOH A 33 33 33 HOH TIP . 
E 5 HOH A 34 34 34 HOH TIP . 
E 5 HOH A 35 35 35 HOH TIP . 
E 5 HOH A 36 36 36 HOH TIP . 
E 5 HOH A 37 37 37 HOH TIP . 
E 5 HOH A 38 38 38 HOH TIP . 
E 5 HOH A 39 39 39 HOH TIP . 
E 5 HOH A 40 40 40 HOH TIP . 
E 5 HOH A 41 41 41 HOH TIP . 
E 5 HOH A 42 42 42 HOH TIP . 
E 5 HOH A 43 43 43 HOH TIP . 
E 5 HOH A 44 44 44 HOH TIP . 
E 5 HOH A 45 45 45 HOH TIP . 
E 5 HOH A 46 46 46 HOH TIP . 
E 5 HOH A 47 47 47 HOH TIP . 
E 5 HOH A 48 48 48 HOH TIP . 
E 5 HOH A 49 49 49 HOH TIP . 
E 5 HOH A 50 50 50 HOH TIP . 
E 5 HOH A 51 51 51 HOH TIP . 
E 5 HOH A 52 52 52 HOH TIP . 
E 5 HOH A 53 53 53 HOH TIP . 
E 5 HOH A 54 54 54 HOH TIP . 
E 5 HOH A 55 55 55 HOH TIP . 
E 5 HOH A 56 56 56 HOH TIP . 
E 5 HOH A 57 57 57 HOH TIP . 
E 5 HOH A 58 59 59 HOH TIP . 
E 5 HOH A 59 60 60 HOH TIP . 
E 5 HOH A 60 61 61 HOH TIP . 
E 5 HOH A 61 62 62 HOH TIP . 
E 5 HOH A 62 63 63 HOH TIP . 
E 5 HOH A 63 64 64 HOH TIP . 
E 5 HOH A 64 65 65 HOH TIP . 
E 5 HOH A 65 66 66 HOH TIP . 
E 5 HOH A 66 67 67 HOH TIP . 
E 5 HOH A 67 68 68 HOH TIP . 
E 5 HOH A 68 69 69 HOH TIP . 
E 5 HOH A 69 70 70 HOH TIP . 
E 5 HOH A 70 71 71 HOH TIP . 
E 5 HOH A 71 72 72 HOH TIP . 
E 5 HOH A 72 73 73 HOH TIP . 
E 5 HOH A 73 74 74 HOH TIP . 
E 5 HOH A 74 75 75 HOH TIP . 
E 5 HOH A 75 77 77 HOH TIP . 
E 5 HOH A 76 78 78 HOH TIP . 
E 5 HOH A 77 79 79 HOH TIP . 
E 5 HOH A 78 80 80 HOH TIP . 
E 5 HOH A 79 81 81 HOH TIP . 
E 5 HOH A 80 82 82 HOH TIP . 
E 5 HOH A 81 83 83 HOH TIP . 
E 5 HOH A 82 84 84 HOH TIP . 
E 5 HOH A 83 85 85 HOH TIP . 
E 5 HOH A 84 86 86 HOH TIP . 
E 5 HOH A 85 87 87 HOH TIP . 
E 5 HOH A 86 88 88 HOH TIP . 
E 5 HOH A 87 89 89 HOH TIP . 
E 5 HOH A 88 90 90 HOH TIP . 
E 5 HOH A 89 91 91 HOH TIP . 
E 5 HOH A 90 93 93 HOH TIP . 
E 5 HOH A 91 94 94 HOH TIP . 
E 5 HOH A 92 95 95 HOH TIP . 
E 5 HOH A 93 98 98 HOH TIP . 
E 5 HOH A 94 99 99 HOH TIP . 
E 5 HOH A 95 100 100 HOH TIP . 
E 5 HOH A 96 101 101 HOH TIP . 
E 5 HOH A 97 102 102 HOH TIP . 
E 5 HOH A 98 103 103 HOH TIP . 
E 5 HOH A 99 104 104 HOH TIP . 
E 5 HOH A 100 105 105 HOH TIP . 
E 5 HOH A 101 106 106 HOH TIP . 
E 5 HOH A 102 107 107 HOH TIP . 
E 5 HOH A 103 108 108 HOH TIP . 
E 5 HOH A 104 109 109 HOH TIP . 
E 5 HOH A 105 111 111 HOH TIP . 
E 5 HOH A 106 112 112 HOH TIP . 
E 5 HOH A 107 113 113 HOH TIP . 
E 5 HOH A 108 114 114 HOH TIP . 
E 5 HOH A 109 116 116 HOH TIP . 
E 5 HOH A 110 117 117 HOH TIP . 
E 5 HOH A 111 118 118 HOH TIP . 
E 5 HOH A 112 119 119 HOH TIP . 
E 5 HOH A 113 120 120 HOH TIP . 
E 5 HOH A 114 121 121 HOH TIP . 
E 5 HOH A 115 122 122 HOH TIP . 
E 5 HOH A 116 123 123 HOH TIP . 
E 5 HOH A 117 124 124 HOH TIP . 
E 5 HOH A 118 125 125 HOH TIP . 
E 5 HOH A 119 126 126 HOH TIP . 
E 5 HOH A 120 127 127 HOH TIP . 
E 5 HOH A 121 128 128 HOH TIP . 
E 5 HOH A 122 129 129 HOH TIP . 
E 5 HOH A 123 130 130 HOH TIP . 
E 5 HOH A 124 131 131 HOH TIP . 
E 5 HOH A 125 132 132 HOH TIP . 
E 5 HOH A 126 133 133 HOH TIP . 
E 5 HOH A 127 134 134 HOH TIP . 
E 5 HOH A 128 135 135 HOH TIP . 
E 5 HOH A 129 136 136 HOH TIP . 
E 5 HOH A 130 137 137 HOH TIP . 
E 5 HOH A 131 138 138 HOH TIP . 
E 5 HOH A 132 139 139 HOH TIP . 
E 5 HOH A 133 140 140 HOH TIP . 
E 5 HOH A 134 141 141 HOH TIP . 
E 5 HOH A 135 142 142 HOH TIP . 
E 5 HOH A 136 143 143 HOH TIP . 
E 5 HOH A 137 144 144 HOH TIP . 
E 5 HOH A 138 145 145 HOH TIP . 
E 5 HOH A 139 146 146 HOH TIP . 
E 5 HOH A 140 147 147 HOH TIP . 
E 5 HOH A 141 148 148 HOH TIP . 
E 5 HOH A 142 149 149 HOH TIP . 
E 5 HOH A 143 150 150 HOH TIP . 
E 5 HOH A 144 151 151 HOH TIP . 
E 5 HOH A 145 153 153 HOH TIP . 
E 5 HOH A 146 154 154 HOH TIP . 
E 5 HOH A 147 155 155 HOH TIP . 
E 5 HOH A 148 156 156 HOH TIP . 
E 5 HOH A 149 157 157 HOH TIP . 
E 5 HOH A 150 158 158 HOH TIP . 
E 5 HOH A 151 159 159 HOH TIP . 
E 5 HOH A 152 160 160 HOH TIP . 
E 5 HOH A 153 161 161 HOH TIP . 
E 5 HOH A 154 162 162 HOH TIP . 
E 5 HOH A 155 163 163 HOH TIP . 
E 5 HOH A 156 164 164 HOH TIP . 
E 5 HOH A 157 165 165 HOH TIP . 
E 5 HOH A 158 166 166 HOH TIP . 
E 5 HOH A 159 167 167 HOH TIP . 
E 5 HOH A 160 168 168 HOH TIP . 
E 5 HOH A 161 169 169 HOH TIP . 
E 5 HOH A 162 170 170 HOH TIP . 
E 5 HOH A 163 171 171 HOH TIP . 
E 5 HOH A 164 172 172 HOH TIP . 
E 5 HOH A 165 173 173 HOH TIP . 
E 5 HOH A 166 174 174 HOH TIP . 
E 5 HOH A 167 175 175 HOH TIP . 
E 5 HOH A 168 177 177 HOH TIP . 
E 5 HOH A 169 178 178 HOH TIP . 
E 5 HOH A 170 179 179 HOH TIP . 
E 5 HOH A 171 180 180 HOH TIP . 
E 5 HOH A 172 181 181 HOH TIP . 
E 5 HOH A 173 182 182 HOH TIP . 
E 5 HOH A 174 183 183 HOH TIP . 
E 5 HOH A 175 184 184 HOH TIP . 
E 5 HOH A 176 185 185 HOH TIP . 
E 5 HOH A 177 186 186 HOH TIP . 
E 5 HOH A 178 187 187 HOH TIP . 
E 5 HOH A 179 188 188 HOH TIP . 
E 5 HOH A 180 189 189 HOH TIP . 
E 5 HOH A 181 190 190 HOH TIP . 
E 5 HOH A 182 191 191 HOH TIP . 
E 5 HOH A 183 193 193 HOH TIP . 
E 5 HOH A 184 194 194 HOH TIP . 
E 5 HOH A 185 195 195 HOH TIP . 
E 5 HOH A 186 197 197 HOH TIP . 
E 5 HOH A 187 198 198 HOH TIP . 
E 5 HOH A 188 199 199 HOH TIP . 
E 5 HOH A 189 200 200 HOH TIP . 
E 5 HOH A 190 201 201 HOH TIP . 
E 5 HOH A 191 202 202 HOH TIP . 
E 5 HOH A 192 203 203 HOH TIP . 
E 5 HOH A 193 204 204 HOH TIP . 
E 5 HOH A 194 205 205 HOH TIP . 
E 5 HOH A 195 206 206 HOH TIP . 
E 5 HOH A 196 207 207 HOH TIP . 
E 5 HOH A 197 208 208 HOH TIP . 
E 5 HOH A 198 209 209 HOH TIP . 
E 5 HOH A 199 210 210 HOH TIP . 
E 5 HOH A 200 211 211 HOH TIP . 
E 5 HOH A 201 212 212 HOH TIP . 
E 5 HOH A 202 213 213 HOH TIP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N TRP . . . D 4 51.998 -7.824 56.563 1 31.21 ? N TRP 5294 A 1 
HETATM 2 C CA TRP . . . D 4 52.762 -8.54 55.557 1 30.19 ? CA TRP 5294 A 1 
HETATM 3 C C TRP . . . D 4 54.165 -7.919 55.529 1 38.51 ? C TRP 5294 A 1 
HETATM 4 O O TRP . . . D 4 54.748 -7.732 54.437 1 37.03 ? O TRP 5294 A 1 
HETATM 5 C CB TRP . . . D 4 52.063 -8.407 54.198 1 31.84 ? CB TRP 5294 A 1 
HETATM 6 C CG TRP . . . D 4 52.334 -7.116 53.513 1 33.43 ? CG TRP 5294 A 1 
HETATM 7 C CD1 TRP . . . D 4 52.453 -5.887 54.095 1 36.17 ? CD1 TRP 5294 A 1 
HETATM 8 C CD2 TRP . . . D 4 52.61 -6.93 52.121 1 36.42 ? CD2 TRP 5294 A 1 
HETATM 9 N NE1 TRP . . . D 4 52.802 -4.944 53.155 1 32.29 ? NE1 TRP 5294 A 1 
HETATM 10 C CE2 TRP . . . D 4 52.903 -5.56 51.932 1 37.37 ? CE2 TRP 5294 A 1 
HETATM 11 C CE3 TRP . . . D 4 52.641 -7.788 51.012 1 38.29 ? CE3 TRP 5294 A 1 
HETATM 12 C CZ2 TRP . . . D 4 53.225 -5.028 50.682 1 33.41 ? CZ2 TRP 5294 A 1 
HETATM 13 C CZ3 TRP . . . D 4 52.961 -7.255 49.764 1 30.38 ? CZ3 TRP 5294 A 1 
HETATM 14 C CH2 TRP . . . D 4 53.249 -5.885 49.614 1 31.39 ? CH2 TRP 5294 A 1 
HETATM 15 O OXT TRP . . . D 4 54.679 -7.629 56.631 1 33.1 ? OXT TRP 5294 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           297 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           15 
#