data_1YXX # _model_server_result.job_id yC66yeo8qiS_Zwa60FbFdA _model_server_result.datetime_utc '2024-12-02 17:30:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1yxx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":323}' # _entry.id 1YXX # _exptl.entry_id 1YXX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.241 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3E)-3-[(4-HYDROXYPHENYL)IMINO]-1H-INDOL-2(3H)-ONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1YXX _cell.length_a 96.592 _cell.length_b 96.592 _cell.length_c 80.556 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YXX _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H10 N2 O2' _chem_comp.formula_weight 238.241 _chem_comp.id LI7 _chem_comp.mon_nstd_flag . _chem_comp.name (3E)-3-[(4-HYDROXYPHENYL)IMINO]-1H-INDOL-2(3H)-ONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C4 C5 LI7 doub 204 n y C4 C3 LI7 sing 205 n y C4 H4 LI7 sing 206 n n C5 C6 LI7 sing 207 n y C5 C9 LI7 sing 208 n n C6 N7 LI7 sing 209 n n C6 C1 LI7 doub 210 n y C8 O18 LI7 doub 211 n n C8 C9 LI7 sing 212 n n C8 N7 LI7 sing 213 n n C13 C12 LI7 doub 214 n y C13 C14 LI7 sing 215 n y C13 H13 LI7 sing 216 n n C15 C14 LI7 doub 217 n y C15 C16 LI7 sing 218 n y C15 H15 LI7 sing 219 n n C9 N10 LI7 doub 220 z n N7 HN7 LI7 sing 221 n n C3 C2 LI7 doub 222 n y C3 H3 LI7 sing 223 n n C2 C1 LI7 sing 224 n y C2 H2 LI7 sing 225 n n C1 H1 LI7 sing 226 n n N10 C11 LI7 sing 227 n n C11 C12 LI7 sing 228 n y C11 C16 LI7 doub 229 n y C12 H12 LI7 sing 230 n n C14 O17 LI7 sing 231 n n O17 H17 LI7 sing 232 n n C16 H16 LI7 sing 233 n n # _atom_sites.entry_id 1YXX _atom_sites.fract_transf_matrix[1][1] 0.01035 _atom_sites.fract_transf_matrix[1][2] 0.00598 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01195 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01241 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IMD A 1 322 106 IMD IMD . C 3 LI7 A 1 323 107 LI7 LI7 . D 4 HOH A 1 324 1 HOH HOH . D 4 HOH A 2 325 2 HOH HOH . D 4 HOH A 3 326 3 HOH HOH . D 4 HOH A 4 327 4 HOH HOH . D 4 HOH A 5 328 5 HOH HOH . D 4 HOH A 6 329 6 HOH HOH . D 4 HOH A 7 330 7 HOH HOH . D 4 HOH A 8 331 8 HOH HOH . D 4 HOH A 9 332 9 HOH HOH . D 4 HOH A 10 333 10 HOH HOH . D 4 HOH A 11 334 11 HOH HOH . D 4 HOH A 12 335 12 HOH HOH . D 4 HOH A 13 336 13 HOH HOH . D 4 HOH A 14 337 14 HOH HOH . D 4 HOH A 15 338 15 HOH HOH . D 4 HOH A 16 339 16 HOH HOH . D 4 HOH A 17 340 17 HOH HOH . D 4 HOH A 18 341 18 HOH HOH . D 4 HOH A 19 342 19 HOH HOH . D 4 HOH A 20 343 20 HOH HOH . D 4 HOH A 21 344 21 HOH HOH . D 4 HOH A 22 345 22 HOH HOH . D 4 HOH A 23 346 23 HOH HOH . D 4 HOH A 24 347 24 HOH HOH . D 4 HOH A 25 348 25 HOH HOH . D 4 HOH A 26 349 26 HOH HOH . D 4 HOH A 27 350 27 HOH HOH . D 4 HOH A 28 351 28 HOH HOH . D 4 HOH A 29 352 29 HOH HOH . D 4 HOH A 30 353 30 HOH HOH . D 4 HOH A 31 354 31 HOH HOH . D 4 HOH A 32 355 32 HOH HOH . D 4 HOH A 33 356 33 HOH HOH . D 4 HOH A 34 357 34 HOH HOH . D 4 HOH A 35 358 35 HOH HOH . D 4 HOH A 36 359 36 HOH HOH . D 4 HOH A 37 360 37 HOH HOH . D 4 HOH A 38 361 38 HOH HOH . D 4 HOH A 39 362 39 HOH HOH . D 4 HOH A 40 363 40 HOH HOH . D 4 HOH A 41 364 41 HOH HOH . D 4 HOH A 42 365 42 HOH HOH . D 4 HOH A 43 366 43 HOH HOH . D 4 HOH A 44 367 44 HOH HOH . D 4 HOH A 45 368 45 HOH HOH . D 4 HOH A 46 369 46 HOH HOH . D 4 HOH A 47 370 47 HOH HOH . D 4 HOH A 48 371 48 HOH HOH . D 4 HOH A 49 372 49 HOH HOH . D 4 HOH A 50 373 50 HOH HOH . D 4 HOH A 51 374 51 HOH HOH . D 4 HOH A 52 375 52 HOH HOH . D 4 HOH A 53 376 53 HOH HOH . D 4 HOH A 54 377 54 HOH HOH . D 4 HOH A 55 378 55 HOH HOH . D 4 HOH A 56 379 56 HOH HOH . D 4 HOH A 57 380 57 HOH HOH . D 4 HOH A 58 381 58 HOH HOH . D 4 HOH A 59 382 59 HOH HOH . D 4 HOH A 60 383 60 HOH HOH . D 4 HOH A 61 384 61 HOH HOH . D 4 HOH A 62 385 62 HOH HOH . D 4 HOH A 63 386 63 HOH HOH . D 4 HOH A 64 387 64 HOH HOH . D 4 HOH A 65 388 65 HOH HOH . D 4 HOH A 66 389 66 HOH HOH . D 4 HOH A 67 390 67 HOH HOH . D 4 HOH A 68 391 68 HOH HOH . D 4 HOH A 69 392 69 HOH HOH . D 4 HOH A 70 393 70 HOH HOH . D 4 HOH A 71 394 71 HOH HOH . D 4 HOH A 72 395 72 HOH HOH . D 4 HOH A 73 396 73 HOH HOH . D 4 HOH A 74 397 74 HOH HOH . D 4 HOH A 75 398 75 HOH HOH . D 4 HOH A 76 399 76 HOH HOH . D 4 HOH A 77 400 77 HOH HOH . D 4 HOH A 78 401 78 HOH HOH . D 4 HOH A 79 402 79 HOH HOH . D 4 HOH A 80 403 80 HOH HOH . D 4 HOH A 81 404 81 HOH HOH . D 4 HOH A 82 405 82 HOH HOH . D 4 HOH A 83 406 83 HOH HOH . D 4 HOH A 84 407 84 HOH HOH . D 4 HOH A 85 408 85 HOH HOH . D 4 HOH A 86 409 86 HOH HOH . D 4 HOH A 87 410 87 HOH HOH . D 4 HOH A 88 411 88 HOH HOH . D 4 HOH A 89 412 89 HOH HOH . D 4 HOH A 90 413 90 HOH HOH . D 4 HOH A 91 414 91 HOH HOH . D 4 HOH A 92 415 92 HOH HOH . D 4 HOH A 93 416 93 HOH HOH . D 4 HOH A 94 417 94 HOH HOH . D 4 HOH A 95 418 95 HOH HOH . D 4 HOH A 96 419 96 HOH HOH . D 4 HOH A 97 420 97 HOH HOH . D 4 HOH A 98 421 98 HOH HOH . D 4 HOH A 99 422 99 HOH HOH . D 4 HOH A 100 423 100 HOH HOH . D 4 HOH A 101 424 101 HOH HOH . D 4 HOH A 102 425 102 HOH HOH . D 4 HOH A 103 426 103 HOH HOH . D 4 HOH A 104 427 104 HOH HOH . D 4 HOH A 105 428 105 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 LI7 . . . C 3 73.977 36.32 2.649 1 60.5 ? C4 LI7 323 A 1 HETATM 2 C C5 LI7 . . . C 3 73.77 36.852 1.379 1 59.73 ? C5 LI7 323 A 1 HETATM 3 C C6 LI7 . . . C 3 73.365 38.24 1.102 1 60.71 ? C6 LI7 323 A 1 HETATM 4 C C8 LI7 . . . C 3 73.527 37.32 -0.92 1 59.42 ? C8 LI7 323 A 1 HETATM 5 C C13 LI7 . . . C 3 74.872 31.776 -1.922 1 57.43 ? C13 LI7 323 A 1 HETATM 6 C C15 LI7 . . . C 3 73.961 33.455 -3.408 1 56.67 ? C15 LI7 323 A 1 HETATM 7 O O18 LI7 . . . C 3 73.478 37.238 -2.21 1 59.07 ? O18 LI7 323 A 1 HETATM 8 C C9 LI7 . . . C 3 73.879 36.22 0.058 1 57.79 ? C9 LI7 323 A 1 HETATM 9 N N7 LI7 . . . C 3 73.224 38.485 -0.277 1 59.28 ? N7 LI7 323 A 1 HETATM 10 C C3 LI7 . . . C 3 73.788 37.174 3.732 1 60.71 ? C3 LI7 323 A 1 HETATM 11 C C2 LI7 . . . C 3 73.404 38.515 3.53 1 61.29 ? C2 LI7 323 A 1 HETATM 12 C C1 LI7 . . . C 3 73.195 39.05 2.241 1 61.33 ? C1 LI7 323 A 1 HETATM 13 N N10 LI7 . . . C 3 74.301 34.922 -0.034 1 57.21 ? N10 LI7 323 A 1 HETATM 14 C C11 LI7 . . . C 3 74.4 34.04 -1.117 1 56.6 ? C11 LI7 323 A 1 HETATM 15 C C12 LI7 . . . C 3 74.838 32.722 -0.878 1 56.82 ? C12 LI7 323 A 1 HETATM 16 C C14 LI7 . . . C 3 74.422 32.163 -3.196 1 55.8 ? C14 LI7 323 A 1 HETATM 17 O O17 LI7 . . . C 3 74.395 31.352 -4.23 1 52.18 ? O17 LI7 323 A 1 HETATM 18 C C16 LI7 . . . C 3 73.935 34.391 -2.384 1 55.83 ? C16 LI7 323 A 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 639 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 18 #