data_1YY5
#
_model_server_result.job_id            DXEEgNqcIoseh2HysjJJRA 
_model_server_result.datetime_utc      '2024-11-05 00:09:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1yy5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":803}' 
#
_entry.id    1YY5 
#
_exptl.entry_id    1YY5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1YY5 
_cell.length_a            102.711 
_cell.length_b            215.365 
_cell.length_c            118.157 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1YY5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 221 A CYS 221 1_555 A SG CYS 238 A CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
disulf ? disulf2 B SG CYS 221 B CYS 221 1_555 B SG CYS 238 B CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 83 n n 
PA O2A FAD sing 84 n n 
PA O5B FAD sing 85 n n 
PA O3P FAD sing 86 n n 
O2A HOA2 FAD sing 87 n n 
O5B C5B FAD sing 88 n n 
C5B C4B FAD sing 89 n n 
C5B H51A FAD sing 90 n n 
C5B H52A FAD sing 91 n n 
C4B O4B FAD sing 92 n n 
C4B C3B FAD sing 93 n n 
C4B H4B FAD sing 94 n n 
O4B C1B FAD sing 95 n n 
C3B O3B FAD sing 96 n n 
C3B C2B FAD sing 97 n n 
C3B H3B FAD sing 98 n n 
O3B HO3A FAD sing 99 n n 
C2B O2B FAD sing 100 n n 
C2B C1B FAD sing 101 n n 
C2B H2B FAD sing 102 n n 
O2B HO2A FAD sing 103 n n 
C1B N9A FAD sing 104 n n 
C1B H1B FAD sing 105 n n 
N9A C8A FAD sing 106 n y 
N9A C4A FAD sing 107 n y 
C8A N7A FAD doub 108 n y 
C8A H8A FAD sing 109 n n 
N7A C5A FAD sing 110 n y 
C5A C6A FAD sing 111 n y 
C5A C4A FAD doub 112 n y 
C6A N6A FAD sing 113 n n 
C6A N1A FAD doub 114 n y 
N6A H61A FAD sing 115 n n 
N6A H62A FAD sing 116 n n 
N1A C2A FAD sing 117 n y 
C2A N3A FAD doub 118 n y 
C2A H2A FAD sing 119 n n 
N3A C4A FAD sing 120 n y 
N1 C2 FAD sing 121 n n 
N1 C10 FAD doub 122 n n 
C2 O2 FAD doub 123 n n 
C2 N3 FAD sing 124 n n 
N3 C4 FAD sing 125 n n 
N3 HN3 FAD sing 126 n n 
C4 O4 FAD doub 127 n n 
C4 C4X FAD sing 128 n n 
C4X N5 FAD doub 129 n n 
C4X C10 FAD sing 130 n n 
N5 C5X FAD sing 131 n n 
C5X C6 FAD doub 132 n y 
C5X C9A FAD sing 133 n y 
C6 C7 FAD sing 134 n y 
C6 H6 FAD sing 135 n n 
C7 C7M FAD sing 136 n n 
C7 C8 FAD doub 137 n y 
C7M HM71 FAD sing 138 n n 
C7M HM72 FAD sing 139 n n 
C7M HM73 FAD sing 140 n n 
C8 C8M FAD sing 141 n n 
C8 C9 FAD sing 142 n y 
C8M HM81 FAD sing 143 n n 
C8M HM82 FAD sing 144 n n 
C8M HM83 FAD sing 145 n n 
C9 C9A FAD doub 146 n y 
C9 H9 FAD sing 147 n n 
C9A N10 FAD sing 148 n n 
N10 C10 FAD sing 149 n n 
N10 C1' FAD sing 150 n n 
C1' C2' FAD sing 151 n n 
C1' "H1'1" FAD sing 152 n n 
C1' "H1'2" FAD sing 153 n n 
C2' O2' FAD sing 154 n n 
C2' C3' FAD sing 155 n n 
C2' H2' FAD sing 156 n n 
O2' HO2' FAD sing 157 n n 
C3' O3' FAD sing 158 n n 
C3' C4' FAD sing 159 n n 
C3' H3' FAD sing 160 n n 
O3' HO3' FAD sing 161 n n 
C4' O4' FAD sing 162 n n 
C4' C5' FAD sing 163 n n 
C4' H4' FAD sing 164 n n 
O4' HO4' FAD sing 165 n n 
C5' O5' FAD sing 166 n n 
C5' "H5'1" FAD sing 167 n n 
C5' "H5'2" FAD sing 168 n n 
O5' P FAD sing 169 n n 
P O1P FAD doub 170 n n 
P O2P FAD sing 171 n n 
P O3P FAD sing 172 n n 
O2P HOP2 FAD sing 173 n n 
#
_atom_sites.entry_id                     1YY5 
_atom_sites.fract_transf_matrix[1][1]    0.009736 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004643 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008463 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FAD A 1 803 803 FAD FAD . 
D 2 FAD B 1 804 804 FAD FAD . 
E 3 HOH A 1 804 3 HOH TIP . 
E 3 HOH A 2 805 5 HOH TIP . 
E 3 HOH A 3 806 7 HOH TIP . 
E 3 HOH A 4 807 8 HOH TIP . 
E 3 HOH A 5 808 10 HOH TIP . 
E 3 HOH A 6 809 11 HOH TIP . 
E 3 HOH A 7 810 12 HOH TIP . 
E 3 HOH A 8 811 20 HOH TIP . 
E 3 HOH A 9 812 21 HOH TIP . 
E 3 HOH A 10 813 25 HOH TIP . 
E 3 HOH A 11 814 26 HOH TIP . 
E 3 HOH A 12 815 27 HOH TIP . 
E 3 HOH A 13 816 28 HOH TIP . 
E 3 HOH A 14 817 29 HOH TIP . 
E 3 HOH A 15 818 30 HOH TIP . 
E 3 HOH A 16 819 31 HOH TIP . 
E 3 HOH A 17 820 34 HOH TIP . 
E 3 HOH A 18 821 36 HOH TIP . 
E 3 HOH A 19 822 37 HOH TIP . 
E 3 HOH A 20 823 40 HOH TIP . 
E 3 HOH A 21 824 41 HOH TIP . 
E 3 HOH A 22 825 43 HOH TIP . 
E 3 HOH A 23 826 46 HOH TIP . 
E 3 HOH A 24 827 47 HOH TIP . 
E 3 HOH A 25 828 48 HOH TIP . 
E 3 HOH A 26 829 49 HOH TIP . 
E 3 HOH A 27 830 51 HOH TIP . 
E 3 HOH A 28 831 52 HOH TIP . 
E 3 HOH A 29 832 53 HOH TIP . 
E 3 HOH A 30 833 58 HOH TIP . 
E 3 HOH A 31 834 59 HOH TIP . 
E 3 HOH A 32 835 60 HOH TIP . 
E 3 HOH A 33 836 62 HOH TIP . 
E 3 HOH A 34 837 63 HOH TIP . 
E 3 HOH A 35 838 64 HOH TIP . 
E 3 HOH A 36 839 65 HOH TIP . 
E 3 HOH A 37 840 66 HOH TIP . 
E 3 HOH A 38 841 72 HOH TIP . 
F 3 HOH B 1 805 1 HOH TIP . 
F 3 HOH B 2 806 2 HOH TIP . 
F 3 HOH B 3 807 4 HOH TIP . 
F 3 HOH B 4 808 6 HOH TIP . 
F 3 HOH B 5 809 9 HOH TIP . 
F 3 HOH B 6 810 13 HOH TIP . 
F 3 HOH B 7 811 14 HOH TIP . 
F 3 HOH B 8 812 15 HOH TIP . 
F 3 HOH B 9 813 16 HOH TIP . 
F 3 HOH B 10 814 17 HOH TIP . 
F 3 HOH B 11 815 18 HOH TIP . 
F 3 HOH B 12 816 19 HOH TIP . 
F 3 HOH B 13 817 22 HOH TIP . 
F 3 HOH B 14 818 23 HOH TIP . 
F 3 HOH B 15 819 24 HOH TIP . 
F 3 HOH B 16 820 32 HOH TIP . 
F 3 HOH B 17 821 33 HOH TIP . 
F 3 HOH B 18 822 35 HOH TIP . 
F 3 HOH B 19 823 38 HOH TIP . 
F 3 HOH B 20 824 39 HOH TIP . 
F 3 HOH B 21 825 42 HOH TIP . 
F 3 HOH B 22 826 44 HOH TIP . 
F 3 HOH B 23 827 45 HOH TIP . 
F 3 HOH B 24 828 50 HOH TIP . 
F 3 HOH B 25 829 54 HOH TIP . 
F 3 HOH B 26 830 55 HOH TIP . 
F 3 HOH B 27 831 56 HOH TIP . 
F 3 HOH B 28 832 57 HOH TIP . 
F 3 HOH B 29 833 61 HOH TIP . 
F 3 HOH B 30 834 67 HOH TIP . 
F 3 HOH B 31 835 68 HOH TIP . 
F 3 HOH B 32 836 69 HOH TIP . 
F 3 HOH B 33 837 70 HOH TIP . 
F 3 HOH B 34 838 71 HOH TIP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . C 2 72.657 -13.308 5.362 1 42.68 ? PA FAD 803 A 1 
HETATM 2 O O1A FAD . . . C 2 72.122 -14.411 4.611 1 52.24 ? O1A FAD 803 A 1 
HETATM 3 O O2A FAD . . . C 2 73.003 -12.744 4.022 1 44.95 ? O2A FAD 803 A 1 
HETATM 4 O O5B FAD . . . C 2 74.098 -12.583 5.511 1 49.69 ? O5B FAD 803 A 1 
HETATM 5 C C5B FAD . . . C 2 74.858 -12.379 6.718 1 44.65 ? C5B FAD 803 A 1 
HETATM 6 C C4B FAD . . . C 2 74.919 -10.803 6.91 1 45.05 ? C4B FAD 803 A 1 
HETATM 7 O O4B FAD . . . C 2 76.267 -10.314 6.777 1 43.73 ? O4B FAD 803 A 1 
HETATM 8 C C3B FAD . . . C 2 74.094 -9.948 5.902 1 42.26 ? C3B FAD 803 A 1 
HETATM 9 O O3B FAD . . . C 2 73.053 -9.259 6.536 1 45.15 ? O3B FAD 803 A 1 
HETATM 10 C C2B FAD . . . C 2 75.116 -9.024 5.253 1 43.44 ? C2B FAD 803 A 1 
HETATM 11 O O2B FAD . . . C 2 74.639 -7.766 4.804 1 40.04 ? O2B FAD 803 A 1 
HETATM 12 C C1B FAD . . . C 2 76.199 -8.945 6.328 1 42.94 ? C1B FAD 803 A 1 
HETATM 13 N N9A FAD . . . C 2 77.553 -8.552 5.871 1 42.19 ? N9A FAD 803 A 1 
HETATM 14 C C8A FAD . . . C 2 78.2 -8.952 4.719 1 42.04 ? C8A FAD 803 A 1 
HETATM 15 N N7A FAD . . . C 2 79.425 -8.429 4.615 1 39.47 ? N7A FAD 803 A 1 
HETATM 16 C C5A FAD . . . C 2 79.584 -7.656 5.741 1 38.35 ? C5A FAD 803 A 1 
HETATM 17 C C6A FAD . . . C 2 80.665 -6.86 6.208 1 38.73 ? C6A FAD 803 A 1 
HETATM 18 N N6A FAD . . . C 2 81.823 -6.721 5.571 1 33.4 ? N6A FAD 803 A 1 
HETATM 19 N N1A FAD . . . C 2 80.489 -6.192 7.408 1 38.64 ? N1A FAD 803 A 1 
HETATM 20 C C2A FAD . . . C 2 79.308 -6.314 8.099 1 39.66 ? C2A FAD 803 A 1 
HETATM 21 N N3A FAD . . . C 2 78.246 -7.063 7.712 1 41.27 ? N3A FAD 803 A 1 
HETATM 22 C C4A FAD . . . C 2 78.425 -7.715 6.53 1 40.94 ? C4A FAD 803 A 1 
HETATM 23 N N1 FAD . . . C 2 66.116 -20.386 2.233 1 33.95 ? N1 FAD 803 A 1 
HETATM 24 C C2 FAD . . . C 2 65.064 -21.126 2.698 1 33.44 ? C2 FAD 803 A 1 
HETATM 25 O O2 FAD . . . C 2 65.173 -21.823 3.705 1 36.55 ? O2 FAD 803 A 1 
HETATM 26 N N3 FAD . . . C 2 63.861 -21.049 2.004 1 31.7 ? N3 FAD 803 A 1 
HETATM 27 C C4 FAD . . . C 2 63.657 -20.279 0.875 1 33.24 ? C4 FAD 803 A 1 
HETATM 28 O O4 FAD . . . C 2 62.541 -20.248 0.309 1 35.84 ? O4 FAD 803 A 1 
HETATM 29 C C4X FAD . . . C 2 64.739 -19.526 0.412 1 32.16 ? C4X FAD 803 A 1 
HETATM 30 N N5 FAD . . . C 2 64.611 -18.708 -0.702 1 33.1 ? N5 FAD 803 A 1 
HETATM 31 C C5X FAD . . . C 2 65.668 -17.912 -1.126 1 30.72 ? C5X FAD 803 A 1 
HETATM 32 C C6 FAD . . . C 2 65.511 -17.061 -2.232 1 30.19 ? C6 FAD 803 A 1 
HETATM 33 C C7 FAD . . . C 2 66.538 -16.203 -2.667 1 29.46 ? C7 FAD 803 A 1 
HETATM 34 C C7M FAD . . . C 2 66.31 -15.298 -3.85 1 28.58 ? C7M FAD 803 A 1 
HETATM 35 C C8 FAD . . . C 2 67.779 -16.213 -1.945 1 31.28 ? C8 FAD 803 A 1 
HETATM 36 C C8M FAD . . . C 2 68.922 -15.295 -2.331 1 29.11 ? C8M FAD 803 A 1 
HETATM 37 C C9 FAD . . . C 2 67.959 -17.089 -0.837 1 29.36 ? C9 FAD 803 A 1 
HETATM 38 C C9A FAD . . . C 2 66.916 -17.947 -0.408 1 30.8 ? C9A FAD 803 A 1 
HETATM 39 N N10 FAD . . . C 2 67.044 -18.833 0.72 1 31.2 ? N10 FAD 803 A 1 
HETATM 40 C C10 FAD . . . C 2 65.96 -19.602 1.128 1 31.27 ? C10 FAD 803 A 1 
HETATM 41 C C1' FAD . . . C 2 68.314 -18.947 1.513 1 30.43 ? C1' FAD 803 A 1 
HETATM 42 C C2' FAD . . . C 2 68.288 -18.153 2.816 1 31.63 ? C2' FAD 803 A 1 
HETATM 43 O O2' FAD . . . C 2 67.872 -16.844 2.503 1 27.65 ? O2' FAD 803 A 1 
HETATM 44 C C3' FAD . . . C 2 69.703 -18.162 3.435 1 30.71 ? C3' FAD 803 A 1 
HETATM 45 O O3' FAD . . . C 2 70.115 -19.496 3.757 1 33.1 ? O3' FAD 803 A 1 
HETATM 46 C C4' FAD . . . C 2 69.875 -17.42 4.766 1 33.67 ? C4' FAD 803 A 1 
HETATM 47 O O4' FAD . . . C 2 69.135 -16.197 4.759 1 30.59 ? O4' FAD 803 A 1 
HETATM 48 C C5' FAD . . . C 2 71.372 -17.149 4.999 1 34.71 ? C5' FAD 803 A 1 
HETATM 49 O O5' FAD . . . C 2 71.479 -16.494 6.269 1 38 ? O5' FAD 803 A 1 
HETATM 50 P P FAD . . . C 2 72.808 -15.892 6.873 1 38.45 ? P FAD 803 A 1 
HETATM 51 O O1P FAD . . . C 2 72.386 -15.377 8.175 1 41.23 ? O1P FAD 803 A 1 
HETATM 52 O O2P FAD . . . C 2 73.901 -16.887 6.934 1 42.1 ? O2P FAD 803 A 1 
HETATM 53 O O3P FAD . . . C 2 73.329 -14.685 5.932 1 41.56 ? O3P FAD 803 A 1 
#
_model_server_stats.io_time_ms              72 
_model_server_stats.parse_time_ms           28 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           327 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           53 
#