data_1YYO
#
_model_server_result.job_id            m2V26w6_ZGfaeEEK1GHFMw 
_model_server_result.datetime_utc      '2025-02-27 02:36:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1yyo 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":201}' 
#
_entry.id    1YYO 
#
_exptl.entry_id    1YYO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              122.143 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1YYO 
_cell.length_a            84.486 
_cell.length_b            61.625 
_cell.length_c            131.114 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1YYO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
hydrog WATSON-CRICK hydrog1 A N3 C 1 C C 1 1_555 B N1 G 12 D G 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog2 A N4 C 1 C C 1 1_555 B O6 G 12 D G 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog3 A O2 C 1 C C 1 1_555 B N2 G 12 D G 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog4 A N1 G 2 C G 2 1_555 B N3 C 11 D C 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog5 A N2 G 2 C G 2 1_555 B O2 C 11 D C 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog6 A O6 G 2 C G 2 1_555 B N4 C 11 D C 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog7 A N3 C 3 C C 3 1_555 B N1 G 10 D G 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog8 A N4 C 3 C C 3 1_555 B O6 G 10 D G 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog9 A O2 C 3 C C 3 1_555 B N2 G 10 D G 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog 'G-C PAIR' hydrog10 A N1 G 4 C G 4 1_555 B O2 C 9 D C 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog11 A N1 A 5 C A 5 1_555 B N3 U 8 D U 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog12 A N6 A 5 C A 5 1_555 B O4 U 8 D U 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog13 A N1 A 6 C A 6 1_555 B N3 U 7 D U 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog14 A N6 A 6 C A 6 1_555 B O4 U 7 D U 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog15 A N3 U 7 C U 7 1_555 B N1 A 6 D A 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog16 A O4 U 7 C U 7 1_555 B N6 A 6 D A 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog17 A N3 U 8 C U 8 1_555 B N1 A 5 D A 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog18 A O4 U 8 C U 8 1_555 B N6 A 5 D A 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog19 A N3 C 9 C C 9 1_555 B N1 G 4 D G 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog20 A N4 C 9 C C 9 1_555 B O6 G 4 D G 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog21 A O2 C 9 C C 9 1_555 B N2 G 4 D G 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog 'G-C PAIR' hydrog22 A N1 G 10 C G 10 1_555 B N3 C 3 D C 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog23 A N3 C 11 C C 11 1_555 B N1 G 2 D G 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog24 A N4 C 11 C C 11 1_555 B O6 G 2 D G 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog25 A O2 C 11 C C 11 1_555 B N2 G 2 D G 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog26 A N1 G 12 C G 12 1_555 B N3 C 1 D C 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog27 A N2 G 12 C G 12 1_555 B O2 C 1 D C 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog28 A O6 G 12 C G 12 1_555 B N4 C 1 D C 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog 'C-G PAIR' hydrog29 C N4 C 1 E C 1 1_555 D O6 G 12 F G 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog30 C N1 G 2 E G 2 1_555 D N3 C 11 F C 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog31 C N2 G 2 E G 2 1_555 D O2 C 11 F C 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog32 C O6 G 2 E G 2 1_555 D N4 C 11 F C 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog33 C N3 C 3 E C 3 1_555 D N1 G 10 F G 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog34 C N4 C 3 E C 3 1_555 D O6 G 10 F G 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog35 C O2 C 3 E C 3 1_555 D N2 G 10 F G 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog36 C N1 G 4 E G 4 1_555 D N3 C 9 F C 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog37 C N2 G 4 E G 4 1_555 D O2 C 9 F C 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog38 C O6 G 4 E G 4 1_555 D N4 C 9 F C 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog39 C N1 A 5 E A 5 1_555 D N3 U 8 F U 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog40 C N6 A 5 E A 5 1_555 D O4 U 8 F U 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog41 C N1 A 6 E A 6 1_555 D N3 U 7 F U 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog42 C N6 A 6 E A 6 1_555 D O4 U 7 F U 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog43 C N3 U 7 E U 7 1_555 D N1 A 6 F A 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog44 C O4 U 7 E U 7 1_555 D N6 A 6 F A 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog45 C N3 U 8 E U 8 1_555 D N1 A 5 F A 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog46 C O4 U 8 E U 8 1_555 D N6 A 5 F A 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog47 C N3 C 9 E C 9 1_555 D N1 G 4 F G 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog48 C N4 C 9 E C 9 1_555 D O6 G 4 F G 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog49 C O2 C 9 E C 9 1_555 D N2 G 4 F G 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog 'G-C PAIR' hydrog50 C N1 G 10 E G 10 1_555 D N3 C 3 F C 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog 'C-G PAIR' hydrog51 C O2 C 11 E C 11 1_555 D N2 G 2 F G 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog52 C N1 G 12 E G 12 1_555 D N3 C 1 F C 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog53 C N2 G 12 E G 12 1_555 D O2 C 1 F C 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog54 C O6 G 12 E G 12 1_555 D N4 C 1 F C 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
#
_chem_comp.formula           'C4 H12 N O3 1' 
_chem_comp.formula_weight    122.143 
_chem_comp.id                TRS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'TRIS BUFFER' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C C1 TRS sing 436 n n 
C C2 TRS sing 437 n n 
C C3 TRS sing 438 n n 
C N TRS sing 439 n n 
C1 O1 TRS sing 440 n n 
C1 H11 TRS sing 441 n n 
C1 H12 TRS sing 442 n n 
C2 O2 TRS sing 443 n n 
C2 H21 TRS sing 444 n n 
C2 H22 TRS sing 445 n n 
C3 O3 TRS sing 446 n n 
C3 H31 TRS sing 447 n n 
C3 H32 TRS sing 448 n n 
N HN1 TRS sing 449 n n 
N HN2 TRS sing 450 n n 
N HN3 TRS sing 451 n n 
O1 HO1 TRS sing 452 n n 
O2 HO2 TRS sing 453 n n 
O3 HO3 TRS sing 454 n n 
#
_atom_sites.entry_id                     1YYO 
_atom_sites.fract_transf_matrix[1][1]    0.011836 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016227 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007627 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 3 TRS E 1 201 1 TRS TRS . 
H 4 HOH C 1 13 12 HOH HOH . 
H 4 HOH C 2 14 34 HOH HOH . 
I 4 HOH D 1 25 13 HOH HOH . 
I 4 HOH D 2 26 20 HOH HOH . 
J 4 HOH E 1 21 21 HOH HOH . 
J 4 HOH E 2 23 23 HOH HOH . 
J 4 HOH E 3 24 24 HOH HOH . 
J 4 HOH E 4 29 29 HOH HOH . 
K 4 HOH F 1 25 9 HOH HOH . 
K 4 HOH F 2 26 10 HOH HOH . 
K 4 HOH F 3 27 11 HOH HOH . 
K 4 HOH F 4 28 14 HOH HOH . 
K 4 HOH F 5 29 22 HOH HOH . 
K 4 HOH F 6 30 25 HOH HOH . 
K 4 HOH F 7 31 26 HOH HOH . 
K 4 HOH F 8 32 27 HOH HOH . 
L 4 HOH A 1 222 15 HOH HOH . 
L 4 HOH A 2 223 19 HOH HOH . 
L 4 HOH A 3 224 30 HOH HOH . 
L 4 HOH A 4 225 31 HOH HOH . 
L 4 HOH A 5 226 32 HOH HOH . 
M 4 HOH B 1 222 1 HOH HOH . 
M 4 HOH B 2 223 2 HOH HOH . 
M 4 HOH B 3 224 3 HOH HOH . 
M 4 HOH B 4 225 4 HOH HOH . 
M 4 HOH B 5 226 5 HOH HOH . 
M 4 HOH B 6 227 6 HOH HOH . 
M 4 HOH B 7 228 7 HOH HOH . 
M 4 HOH B 8 229 8 HOH HOH . 
M 4 HOH B 9 230 16 HOH HOH . 
M 4 HOH B 10 231 17 HOH HOH . 
M 4 HOH B 11 232 18 HOH HOH . 
M 4 HOH B 12 233 28 HOH HOH . 
M 4 HOH B 13 234 33 HOH HOH . 
M 4 HOH B 14 235 35 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C TRS . . . G 3 55.193 23.941 45.102 1 79.9 ? C TRS 201 E 1 
HETATM 2 C C1 TRS . . . G 3 54.058 23.847 44.051 1 87.85 ? C1 TRS 201 E 1 
HETATM 3 C C2 TRS . . . G 3 55.948 22.592 45.219 1 80.29 ? C2 TRS 201 E 1 
HETATM 4 C C3 TRS . . . G 3 54.616 24.407 46.485 1 72.11 ? C3 TRS 201 E 1 
HETATM 5 N N TRS . . . G 3 56.151 24.944 44.667 1 82.68 ? N TRS 201 E 1 
HETATM 6 O O1 TRS . . . G 3 53.654 22.503 43.925 1 105.25 ? O1 TRS 201 E 1 
HETATM 7 O O2 TRS . . . G 3 56.035 22.164 46.573 1 88.18 ? O2 TRS 201 E 1 
HETATM 8 O O3 TRS . . . G 3 53.182 24.164 46.57 1 74.68 ? O3 TRS 201 E 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           251 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           8 
#