data_1YYR
#
_model_server_result.job_id            DTmNKDzDlAOCpxNQKm3RPQ 
_model_server_result.datetime_utc      '2025-05-20 03:33:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1yyr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":709}' 
#
_entry.id    1YYR 
#
_exptl.entry_id    1YYR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              208.363 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (1S)-N,4-DIMETHYL-N-(4-METHYLPENT-3-ENYL)CYCLOHEX-3-ENAMINIUM 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1YYR 
_cell.length_a            122.02 
_cell.length_b            122.02 
_cell.length_c            150.36 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1YYR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B OD1 ASP 100 B ASP 100 1_555 F MG MG . B MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.756 ? 
metalc ? metalc2 B OD2 ASP 100 B ASP 100 1_555 G MG MG . B MG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.946 ? 
metalc ? metalc3 B OD1 ASN 225 B ASN 225 1_555 E MG MG . B MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? 
metalc ? metalc4 B OG SER 229 B SER 229 1_555 E MG MG . B MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? 
metalc ? metalc5 B OE1 GLU 233 B GLU 233 1_555 E MG MG . B MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? 
metalc ? metalc6 I O4 POP . B POP 700 1_555 E MG MG . B MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? 
metalc ? metalc7 I O POP . B POP 700 1_555 E MG MG . B MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.133 ? 
metalc ? metalc8 I O1 POP . B POP 700 1_555 E MG MG . B MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? 
metalc ? metalc9 I O5 POP . B POP 700 1_555 F MG MG . B MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.545 ? 
metalc ? metalc10 I O2 POP . B POP 700 1_555 F MG MG . B MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? 
metalc ? metalc11 I O2 POP . B POP 700 1_555 G MG MG . B MG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? 
metalc ? metalc12 E MG MG . B MG 701 1_555 L O HOH . B HOH 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? 
metalc ? metalc13 F MG MG . B MG 702 1_555 L O HOH . B HOH 820 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? 
metalc ? metalc14 F MG MG . B MG 702 1_555 L O HOH . B HOH 822 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? 
metalc ? metalc15 G MG MG . B MG 703 1_555 L O HOH . B HOH 820 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? 
metalc ? metalc16 G MG MG . B MG 703 1_555 L O HOH . B HOH 821 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? 
metalc ? metalc17 G MG MG . B MG 703 1_555 L O HOH . B HOH 823 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? 
#
_chem_comp.formula           'C14 H26 N 1' 
_chem_comp.formula_weight    208.363 
_chem_comp.id                SAZ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (1S)-N,4-DIMETHYL-N-(4-METHYLPENT-3-ENYL)CYCLOHEX-3-ENAMINIUM 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     (4S)-7-AZABISABOLENE;S-AZABISABOLENE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C01 C02 SAZ sing 296 n n 
C01 C03 SAZ sing 297 n n 
C01 N35 SAZ sing 298 n n 
C01 H01 SAZ sing 299 n n 
C02 C05 SAZ sing 300 n n 
C02 H021 SAZ sing 301 n n 
C02 H022 SAZ sing 302 n n 
C03 C07 SAZ sing 303 n n 
C03 H031 SAZ sing 304 n n 
C03 H032 SAZ sing 305 n n 
C05 C25 SAZ doub 306 n n 
C05 H05 SAZ sing 307 n n 
C07 C25 SAZ sing 308 n n 
C07 H071 SAZ sing 309 n n 
C07 H072 SAZ sing 310 n n 
C08 C09 SAZ sing 311 n n 
C08 C13 SAZ doub 312 n n 
C08 H08 SAZ sing 313 n n 
C09 C10 SAZ sing 314 n n 
C09 H091 SAZ sing 315 n n 
C09 H092 SAZ sing 316 n n 
C10 N35 SAZ sing 317 n n 
C10 H101 SAZ sing 318 n n 
C10 H102 SAZ sing 319 n n 
C13 C16 SAZ sing 320 n n 
C13 C17 SAZ sing 321 n n 
C16 H161 SAZ sing 322 n n 
C16 H162 SAZ sing 323 n n 
C16 H163 SAZ sing 324 n n 
C17 H171 SAZ sing 325 n n 
C17 H172 SAZ sing 326 n n 
C17 H173 SAZ sing 327 n n 
C25 C26 SAZ sing 328 n n 
C26 H261 SAZ sing 329 n n 
C26 H262 SAZ sing 330 n n 
C26 H263 SAZ sing 331 n n 
N35 C36 SAZ sing 332 n n 
N35 H35 SAZ sing 333 n n 
C36 H361 SAZ sing 334 n n 
C36 H362 SAZ sing 335 n n 
C36 H363 SAZ sing 336 n n 
#
_atom_sites.entry_id                     1YYR 
_atom_sites.fract_transf_matrix[1][1]    0.008195 
_atom_sites.fract_transf_matrix[1][2]    0.004731 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009463 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006651 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SAZ A 1 709 709 SAZ RAZ . 
D 3 EDO A 1 802 802 EDO EDO . 
E 4 MG B 1 701 701 MG MG2 . 
F 4 MG B 1 702 702 MG MG2 . 
G 4 MG B 1 703 703 MG MG2 . 
H 2 SAZ B 1 704 704 SAZ RAZ . 
I 5 POP B 1 700 700 POP POP . 
J 3 EDO B 1 801 801 EDO EDO . 
K 6 HOH A 1 803 1 HOH WAT . 
K 6 HOH A 2 804 2 HOH WAT . 
K 6 HOH A 3 805 5 HOH WAT . 
K 6 HOH A 4 806 6 HOH WAT . 
K 6 HOH A 5 807 11 HOH WAT . 
K 6 HOH A 6 808 13 HOH WAT . 
K 6 HOH A 7 809 15 HOH WAT . 
K 6 HOH A 8 810 17 HOH WAT . 
K 6 HOH A 9 811 22 HOH WAT . 
K 6 HOH A 10 812 23 HOH WAT . 
K 6 HOH A 11 813 24 HOH WAT . 
K 6 HOH A 12 814 28 HOH WAT . 
K 6 HOH A 13 815 35 HOH WAT . 
K 6 HOH A 14 816 36 HOH WAT . 
K 6 HOH A 15 817 38 HOH WAT . 
K 6 HOH A 16 818 40 HOH WAT . 
K 6 HOH A 17 819 42 HOH WAT . 
K 6 HOH A 18 820 46 HOH WAT . 
L 6 HOH B 1 802 3 HOH WAT . 
L 6 HOH B 2 803 4 HOH WAT . 
L 6 HOH B 3 804 7 HOH WAT . 
L 6 HOH B 4 805 8 HOH WAT . 
L 6 HOH B 5 806 9 HOH WAT . 
L 6 HOH B 6 807 10 HOH WAT . 
L 6 HOH B 7 808 12 HOH WAT . 
L 6 HOH B 8 809 14 HOH WAT . 
L 6 HOH B 9 810 16 HOH WAT . 
L 6 HOH B 10 811 18 HOH WAT . 
L 6 HOH B 11 812 19 HOH WAT . 
L 6 HOH B 12 813 20 HOH WAT . 
L 6 HOH B 13 814 21 HOH WAT . 
L 6 HOH B 14 815 25 HOH WAT . 
L 6 HOH B 15 816 26 HOH WAT . 
L 6 HOH B 16 817 27 HOH WAT . 
L 6 HOH B 17 818 29 HOH WAT . 
L 6 HOH B 18 819 30 HOH WAT . 
L 6 HOH B 19 820 31 HOH WAT . 
L 6 HOH B 20 821 32 HOH WAT . 
L 6 HOH B 21 822 33 HOH WAT . 
L 6 HOH B 22 823 34 HOH WAT . 
L 6 HOH B 23 824 37 HOH WAT . 
L 6 HOH B 24 825 39 HOH WAT . 
L 6 HOH B 25 826 41 HOH WAT . 
L 6 HOH B 26 827 43 HOH WAT . 
L 6 HOH B 27 828 44 HOH WAT . 
L 6 HOH B 28 829 45 HOH WAT . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C01 SAZ . . . C 2 -8.413 91.923 37.412 1 66.59 ? C01 SAZ 709 A 1 
HETATM 2 C C02 SAZ . . . C 2 -8.394 93.459 37.832 1 66.39 ? C02 SAZ 709 A 1 
HETATM 3 C C03 SAZ . . . C 2 -7.438 91.67 36.207 1 65.5 ? C03 SAZ 709 A 1 
HETATM 4 C C05 SAZ . . . C 2 -6.95 93.924 38.243 1 65.49 ? C05 SAZ 709 A 1 
HETATM 5 C C07 SAZ . . . C 2 -6.031 92.162 36.598 1 66.03 ? C07 SAZ 709 A 1 
HETATM 6 C C08 SAZ . . . C 2 -9.181 90.136 40.455 1 66.36 ? C08 SAZ 709 A 1 
HETATM 7 C C09 SAZ . . . C 2 -9.539 89.708 39.027 1 66.09 ? C09 SAZ 709 A 1 
HETATM 8 C C10 SAZ . . . C 2 -10.392 90.78 38.268 1 66.36 ? C10 SAZ 709 A 1 
HETATM 9 C C13 SAZ . . . C 2 -7.979 90.465 41.015 1 64.4 ? C13 SAZ 709 A 1 
HETATM 10 C C16 SAZ . . . C 2 -6.635 90.485 40.317 1 62.69 ? C16 SAZ 709 A 1 
HETATM 11 C C17 SAZ . . . C 2 -7.909 90.86 42.483 1 61.77 ? C17 SAZ 709 A 1 
HETATM 12 C C25 SAZ . . . C 2 -5.806 93.172 37.521 1 66.33 ? C25 SAZ 709 A 1 
HETATM 13 C C26 SAZ . . . C 2 -4.429 93.607 37.889 1 67.39 ? C26 SAZ 709 A 1 
HETATM 14 N N35 SAZ . . . C 2 -9.782 91.383 37.076 1 66.73 ? N35 SAZ 709 A 1 
HETATM 15 C C36 SAZ . . . C 2 -10.787 92.358 36.564 1 66.21 ? C36 SAZ 709 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    33 
_model_server_stats.query_time_ms           328 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           15 
#