data_1YYS # _model_server_result.job_id U5umVYwRiA3xeZdvOsN-4A _model_server_result.datetime_utc '2024-11-16 01:29:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1yys # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":702}' # _entry.id 1YYS # _exptl.entry_id 1YYS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1YYS _cell.length_a 121.138 _cell.length_b 121.138 _cell.length_c 150.286 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YYS _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B OD1 ASP 100 B ASP 100 1_555 E MG MG . B MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.642 ? metalc ? metalc2 B OD2 ASP 100 B ASP 100 1_555 F MG MG . B MG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc3 B OE1 GLU 164 B GLU 164 1_555 F MG MG . B MG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.9 ? metalc ? metalc4 B ND2 ASN 185 B ASN 185 1_555 F MG MG . B MG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? metalc ? metalc5 B OD1 ASN 225 B ASN 225 1_555 D MG MG . B MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? metalc ? metalc6 B OE1 GLU 233 B GLU 233 1_555 D MG MG . B MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc7 G O1 POP . B POP 700 1_555 D MG MG . B MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.055 ? metalc ? metalc8 G O4 POP . B POP 700 1_555 D MG MG . B MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.953 ? metalc ? metalc9 G O2 POP . B POP 700 1_555 E MG MG . B MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? metalc ? metalc10 G O5 POP . B POP 700 1_555 E MG MG . B MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc11 G O2 POP . B POP 700 1_555 F MG MG . B MG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1YYS _atom_sites.fract_transf_matrix[1][1] 0.008255 _atom_sites.fract_transf_matrix[1][2] 0.004766 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009532 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006654 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SAZ A 1 709 709 SAZ SAZ . D 3 MG B 1 701 701 MG MG2 . E 3 MG B 1 702 702 MG MG2 . F 3 MG B 1 703 703 MG MG2 . G 4 POP B 1 700 700 POP POP . H 5 HOH A 1 710 3 HOH WAT . H 5 HOH A 2 711 4 HOH WAT . H 5 HOH A 3 712 5 HOH WAT . H 5 HOH A 4 713 6 HOH WAT . H 5 HOH A 5 714 8 HOH WAT . H 5 HOH A 6 715 9 HOH WAT . H 5 HOH A 7 716 10 HOH WAT . H 5 HOH A 8 717 12 HOH WAT . H 5 HOH A 9 718 14 HOH WAT . H 5 HOH A 10 719 15 HOH WAT . H 5 HOH A 11 720 17 HOH WAT . H 5 HOH A 12 721 18 HOH WAT . H 5 HOH A 13 722 19 HOH WAT . H 5 HOH A 14 723 20 HOH WAT . H 5 HOH A 15 724 23 HOH WAT . H 5 HOH A 16 725 24 HOH WAT . H 5 HOH A 17 726 26 HOH WAT . H 5 HOH A 18 727 27 HOH WAT . H 5 HOH A 19 728 28 HOH WAT . H 5 HOH A 20 729 29 HOH WAT . H 5 HOH A 21 730 30 HOH WAT . I 5 HOH B 1 704 1 HOH WAT . I 5 HOH B 2 705 2 HOH WAT . I 5 HOH B 3 706 7 HOH WAT . I 5 HOH B 4 707 11 HOH WAT . I 5 HOH B 5 708 13 HOH WAT . I 5 HOH B 6 709 16 HOH WAT . I 5 HOH B 7 710 21 HOH WAT . I 5 HOH B 8 711 22 HOH WAT . I 5 HOH B 9 712 25 HOH WAT . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x 40.702 _atom_site.Cartn_y 1.382 _atom_site.Cartn_z 90.606 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 69.22 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 702 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 862 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #