data_1YYT # _model_server_result.job_id kHVyF2xCLRLV6ZFceuDpHw _model_server_result.datetime_utc '2025-05-14 05:25:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1yyt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":701}' # _entry.id 1YYT # _exptl.entry_id 1YYT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1YYT _cell.length_a 122.703 _cell.length_b 122.703 _cell.length_c 151.297 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YYT _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B OE1 GLU 100 B GLU 100 1_555 D MG MG . B MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.791 ? metalc ? metalc2 B OD1 ASN 225 B ASN 225 1_555 E MG MG . B MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.908 ? metalc ? metalc3 B OG SER 229 B SER 229 1_555 E MG MG . B MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.921 ? metalc ? metalc4 F O5 POP . B POP 700 1_555 D MG MG . B MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc5 F O2 POP . B POP 700 1_555 D MG MG . B MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.69 ? metalc ? metalc6 F O1 POP . B POP 700 1_555 E MG MG . B MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.996 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1YYT _atom_sites.fract_transf_matrix[1][1] 0.00815 _atom_sites.fract_transf_matrix[1][2] 0.004705 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009411 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00661 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SAZ A 1 709 709 SAZ RAZ . D 3 MG B 1 701 701 MG MG . E 3 MG B 1 702 702 MG MG . F 4 POP B 1 700 700 POP POP . G 2 SAZ B 1 704 704 SAZ RAZ . H 5 HOH A 1 710 1 HOH HOH . H 5 HOH A 2 711 2 HOH HOH . H 5 HOH A 3 712 3 HOH HOH . H 5 HOH A 4 713 4 HOH HOH . H 5 HOH A 5 714 6 HOH HOH . H 5 HOH A 6 715 9 HOH HOH . H 5 HOH A 7 716 11 HOH HOH . H 5 HOH A 8 717 12 HOH HOH . H 5 HOH A 9 718 14 HOH HOH . H 5 HOH A 10 719 15 HOH HOH . H 5 HOH A 11 720 16 HOH HOH . H 5 HOH A 12 721 17 HOH HOH . H 5 HOH A 13 722 19 HOH HOH . H 5 HOH A 14 723 20 HOH HOH . H 5 HOH A 15 724 22 HOH HOH . H 5 HOH A 16 725 23 HOH HOH . H 5 HOH A 17 726 24 HOH HOH . H 5 HOH A 18 727 25 HOH HOH . H 5 HOH A 19 728 27 HOH HOH . H 5 HOH A 20 729 28 HOH HOH . H 5 HOH A 21 730 29 HOH HOH . H 5 HOH A 22 731 34 HOH HOH . H 5 HOH A 23 732 35 HOH HOH . H 5 HOH A 24 733 38 HOH HOH . H 5 HOH A 25 734 39 HOH HOH . H 5 HOH A 26 735 41 HOH HOH . H 5 HOH A 27 736 46 HOH HOH . H 5 HOH A 28 737 47 HOH HOH . H 5 HOH A 29 738 48 HOH HOH . H 5 HOH A 30 739 49 HOH HOH . H 5 HOH A 31 740 52 HOH HOH . H 5 HOH A 32 741 54 HOH HOH . H 5 HOH A 33 742 58 HOH HOH . H 5 HOH A 34 743 63 HOH HOH . H 5 HOH A 35 744 68 HOH HOH . H 5 HOH A 36 745 69 HOH HOH . H 5 HOH A 37 746 70 HOH HOH . H 5 HOH A 38 747 45 HOH HOH . I 5 HOH B 1 705 18 HOH HOH . I 5 HOH B 2 706 5 HOH HOH . I 5 HOH B 3 707 7 HOH HOH . I 5 HOH B 4 708 8 HOH HOH . I 5 HOH B 5 709 10 HOH HOH . I 5 HOH B 6 710 13 HOH HOH . I 5 HOH B 7 711 21 HOH HOH . I 5 HOH B 8 712 26 HOH HOH . I 5 HOH B 9 713 30 HOH HOH . I 5 HOH B 10 714 31 HOH HOH . I 5 HOH B 11 715 32 HOH HOH . I 5 HOH B 12 716 33 HOH HOH . I 5 HOH B 13 717 36 HOH HOH . I 5 HOH B 14 718 37 HOH HOH . I 5 HOH B 15 719 40 HOH HOH . I 5 HOH B 16 720 42 HOH HOH . I 5 HOH B 17 721 43 HOH HOH . I 5 HOH B 18 722 44 HOH HOH . I 5 HOH B 19 723 50 HOH HOH . I 5 HOH B 20 724 51 HOH HOH . I 5 HOH B 21 725 53 HOH HOH . I 5 HOH B 22 726 55 HOH HOH . I 5 HOH B 23 727 56 HOH HOH . I 5 HOH B 24 728 57 HOH HOH . I 5 HOH B 25 729 59 HOH HOH . I 5 HOH B 26 730 60 HOH HOH . I 5 HOH B 27 731 61 HOH HOH . I 5 HOH B 28 732 62 HOH HOH . I 5 HOH B 29 733 64 HOH HOH . I 5 HOH B 30 734 65 HOH HOH . I 5 HOH B 31 735 66 HOH HOH . I 5 HOH B 32 736 67 HOH HOH . I 5 HOH B 33 737 71 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 40.084 _atom_site.Cartn_y 70.736 _atom_site.Cartn_z 40.822 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 114.82 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 701 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 391 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #