data_1YZI
#
_model_server_result.job_id            dABNNcfkCXtm9JN93WTrUQ 
_model_server_result.datetime_utc      '2024-11-04 23:02:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1yzi 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":203}' 
#
_entry.id    1YZI 
#
_exptl.entry_id    1YZI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.138 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            TOLUENE 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1YZI 
_cell.length_a            61.464 
_cell.length_b            61.464 
_cell.length_c            174.75 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1YZI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        91 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/4 0 -1 0 -1 0 0 0 0 -1 61.464 61.464 43.6875 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 E N N 
? 5 F N N 
? 5 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 87 A HIS 87 1_555 D FE HEM . A HEM 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? 
metalc ? metalc2 C C CMO . A CMO 142 1_555 D FE HEM . A HEM 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.756 ? 
metalc ? metalc3 C O CMO . A CMO 142 1_555 D FE HEM . A HEM 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.922 ? 
metalc ? metalc4 B NE2 HIS 92 B HIS 92 1_555 I FE HEM . B HEM 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
metalc ? metalc5 H C CMO . B CMO 147 1_555 I FE HEM . B HEM 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.894 ? 
metalc ? metalc6 H O CMO . B CMO 147 1_555 I FE HEM . B HEM 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.072 ? 
#
_chem_comp.formula           'C7 H8' 
_chem_comp.formula_weight    92.138 
_chem_comp.id                MBN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              TOLUENE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C C1 MBN sing 280 n n 
C H1 MBN sing 281 n n 
C H2A MBN sing 282 n n 
C H3A MBN sing 283 n n 
C1 C2 MBN doub 284 n y 
C1 C6 MBN sing 285 n y 
C2 C3 MBN sing 286 n y 
C2 H2 MBN sing 287 n n 
C3 C4 MBN doub 288 n y 
C3 H3 MBN sing 289 n n 
C4 C5 MBN sing 290 n y 
C4 H4 MBN sing 291 n n 
C5 C6 MBN doub 292 n y 
C5 H5 MBN sing 293 n n 
C6 H6 MBN sing 294 n n 
#
_atom_sites.entry_id                     1YZI 
_atom_sites.fract_transf_matrix[1][1]    0.01627 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01627 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005722 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 CMO A 1 142 142 CMO CMO . 
D 4 HEM A 1 143 143 HEM HEM . 
E 5 MBN A 1 201 201 MBN MBN . 
F 5 MBN A 1 203 203 MBN MBN . 
G 5 MBN A 1 205 205 MBN MBN . 
H 3 CMO B 1 147 147 CMO CMO . 
I 4 HEM B 1 148 148 HEM HEM . 
J 6 HOH A 1 206 1 HOH HOH . 
J 6 HOH A 2 207 2 HOH HOH . 
J 6 HOH A 3 208 3 HOH HOH . 
J 6 HOH A 4 209 4 HOH HOH . 
J 6 HOH A 5 210 5 HOH HOH . 
J 6 HOH A 6 211 6 HOH HOH . 
J 6 HOH A 7 212 7 HOH HOH . 
J 6 HOH A 8 213 9 HOH HOH . 
J 6 HOH A 9 214 10 HOH HOH . 
J 6 HOH A 10 215 11 HOH HOH . 
J 6 HOH A 11 216 12 HOH HOH . 
J 6 HOH A 12 217 13 HOH HOH . 
J 6 HOH A 13 218 14 HOH HOH . 
J 6 HOH A 14 219 15 HOH HOH . 
J 6 HOH A 15 220 16 HOH HOH . 
J 6 HOH A 16 221 17 HOH HOH . 
J 6 HOH A 17 222 18 HOH HOH . 
J 6 HOH A 18 223 19 HOH HOH . 
J 6 HOH A 19 224 20 HOH HOH . 
J 6 HOH A 20 225 21 HOH HOH . 
J 6 HOH A 21 226 22 HOH HOH . 
J 6 HOH A 22 227 23 HOH HOH . 
J 6 HOH A 23 228 24 HOH HOH . 
J 6 HOH A 24 229 25 HOH HOH . 
J 6 HOH A 25 230 26 HOH HOH . 
J 6 HOH A 26 231 27 HOH HOH . 
J 6 HOH A 27 232 28 HOH HOH . 
J 6 HOH A 28 233 30 HOH HOH . 
J 6 HOH A 29 234 31 HOH HOH . 
J 6 HOH A 30 235 32 HOH HOH . 
J 6 HOH A 31 236 33 HOH HOH . 
J 6 HOH A 32 237 34 HOH HOH . 
J 6 HOH A 33 238 35 HOH HOH . 
J 6 HOH A 34 239 36 HOH HOH . 
J 6 HOH A 35 240 37 HOH HOH . 
J 6 HOH A 36 241 38 HOH HOH . 
J 6 HOH A 37 242 39 HOH HOH . 
J 6 HOH A 38 243 58 HOH HOH . 
J 6 HOH A 39 244 59 HOH HOH . 
J 6 HOH A 40 245 60 HOH HOH . 
J 6 HOH A 41 246 61 HOH HOH . 
J 6 HOH A 42 247 62 HOH HOH . 
J 6 HOH A 43 248 63 HOH HOH . 
J 6 HOH A 44 249 64 HOH HOH . 
J 6 HOH A 45 250 65 HOH HOH . 
J 6 HOH A 46 251 66 HOH HOH . 
J 6 HOH A 47 252 67 HOH HOH . 
J 6 HOH A 48 253 75 HOH HOH . 
J 6 HOH A 49 254 83 HOH HOH . 
J 6 HOH A 50 255 84 HOH HOH . 
J 6 HOH A 51 256 85 HOH HOH . 
J 6 HOH A 52 257 86 HOH HOH . 
J 6 HOH A 53 258 87 HOH HOH . 
J 6 HOH A 54 259 88 HOH HOH . 
J 6 HOH A 55 260 89 HOH HOH . 
J 6 HOH A 56 261 90 HOH HOH . 
J 6 HOH A 57 262 95 HOH HOH . 
J 6 HOH A 58 263 96 HOH HOH . 
J 6 HOH A 59 264 97 HOH HOH . 
J 6 HOH A 60 265 98 HOH HOH . 
J 6 HOH A 61 266 99 HOH HOH . 
J 6 HOH A 62 267 100 HOH HOH . 
J 6 HOH A 63 268 101 HOH HOH . 
J 6 HOH A 64 269 102 HOH HOH . 
J 6 HOH A 65 270 103 HOH HOH . 
J 6 HOH A 66 271 104 HOH HOH . 
J 6 HOH A 67 272 105 HOH HOH . 
J 6 HOH A 68 273 106 HOH HOH . 
J 6 HOH A 69 274 107 HOH HOH . 
J 6 HOH A 70 275 108 HOH HOH . 
J 6 HOH A 71 276 109 HOH HOH . 
J 6 HOH A 72 277 120 HOH HOH . 
J 6 HOH A 73 278 121 HOH HOH . 
J 6 HOH A 74 279 122 HOH HOH . 
J 6 HOH A 75 280 123 HOH HOH . 
J 6 HOH A 76 281 124 HOH HOH . 
J 6 HOH A 77 282 125 HOH HOH . 
J 6 HOH A 78 283 126 HOH HOH . 
J 6 HOH A 79 284 135 HOH HOH . 
K 6 HOH B 1 149 8 HOH HOH . 
K 6 HOH B 2 150 29 HOH HOH . 
K 6 HOH B 3 151 40 HOH HOH . 
K 6 HOH B 4 152 41 HOH HOH . 
K 6 HOH B 5 153 42 HOH HOH . 
K 6 HOH B 6 154 43 HOH HOH . 
K 6 HOH B 7 155 44 HOH HOH . 
K 6 HOH B 8 156 45 HOH HOH . 
K 6 HOH B 9 157 46 HOH HOH . 
K 6 HOH B 10 158 47 HOH HOH . 
K 6 HOH B 11 159 48 HOH HOH . 
K 6 HOH B 12 160 49 HOH HOH . 
K 6 HOH B 13 161 50 HOH HOH . 
K 6 HOH B 14 162 51 HOH HOH . 
K 6 HOH B 15 163 52 HOH HOH . 
K 6 HOH B 16 164 53 HOH HOH . 
K 6 HOH B 17 165 54 HOH HOH . 
K 6 HOH B 18 166 55 HOH HOH . 
K 6 HOH B 19 167 56 HOH HOH . 
K 6 HOH B 20 168 57 HOH HOH . 
K 6 HOH B 21 169 68 HOH HOH . 
K 6 HOH B 22 170 69 HOH HOH . 
K 6 HOH B 23 171 70 HOH HOH . 
K 6 HOH B 24 172 71 HOH HOH . 
K 6 HOH B 25 173 72 HOH HOH . 
K 6 HOH B 26 174 73 HOH HOH . 
K 6 HOH B 27 175 74 HOH HOH . 
K 6 HOH B 28 176 76 HOH HOH . 
K 6 HOH B 29 177 77 HOH HOH . 
K 6 HOH B 30 178 78 HOH HOH . 
K 6 HOH B 31 179 79 HOH HOH . 
K 6 HOH B 32 180 80 HOH HOH . 
K 6 HOH B 33 181 81 HOH HOH . 
K 6 HOH B 34 182 82 HOH HOH . 
K 6 HOH B 35 183 91 HOH HOH . 
K 6 HOH B 36 184 92 HOH HOH . 
K 6 HOH B 37 185 93 HOH HOH . 
K 6 HOH B 38 186 94 HOH HOH . 
K 6 HOH B 39 187 110 HOH HOH . 
K 6 HOH B 40 188 111 HOH HOH . 
K 6 HOH B 41 189 112 HOH HOH . 
K 6 HOH B 42 190 113 HOH HOH . 
K 6 HOH B 43 191 114 HOH HOH . 
K 6 HOH B 44 192 115 HOH HOH . 
K 6 HOH B 45 193 116 HOH HOH . 
K 6 HOH B 46 194 117 HOH HOH . 
K 6 HOH B 47 195 118 HOH HOH . 
K 6 HOH B 48 196 119 HOH HOH . 
K 6 HOH B 49 197 127 HOH HOH . 
K 6 HOH B 50 198 128 HOH HOH . 
K 6 HOH B 51 199 129 HOH HOH . 
K 6 HOH B 52 200 130 HOH HOH . 
K 6 HOH B 53 201 131 HOH HOH . 
K 6 HOH B 54 202 132 HOH HOH . 
K 6 HOH B 55 203 133 HOH HOH . 
K 6 HOH B 56 204 134 HOH HOH . 
K 6 HOH B 57 205 136 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C MBN . . . F 5 55.848 35.729 33.058 1 35.71 ? C MBN 203 A 1 
HETATM 2 C C1 MBN . . . F 5 55.329 36.691 34.075 1 38.12 ? C1 MBN 203 A 1 
HETATM 3 C C2 MBN . . . F 5 54.245 36.306 34.937 1 39.42 ? C2 MBN 203 A 1 
HETATM 4 C C3 MBN . . . F 5 53.776 37.218 35.907 1 42.63 ? C3 MBN 203 A 1 
HETATM 5 C C4 MBN . . . F 5 54.374 38.524 36.044 1 41.93 ? C4 MBN 203 A 1 
HETATM 6 C C5 MBN . . . F 5 55.446 38.905 35.187 1 33 ? C5 MBN 203 A 1 
HETATM 7 C C6 MBN . . . F 5 55.919 37.98 34.202 1 39.08 ? C6 MBN 203 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           270 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           7 
#