data_1YZK # _model_server_result.job_id 0Nf7FRsv3YX6_l-5KxFNPg _model_server_result.datetime_utc '2024-11-04 20:28:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1yzk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 1YZK # _exptl.entry_id 1YZK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1YZK _cell.length_a 73.946 _cell.length_b 73.946 _cell.length_c 148.197 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YZK _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 34 A SER 25 1_555 B MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? metalc ? metalc2 A OG1 THR 52 A THR 43 1_555 B MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc3 C O2G GNP . A GNP 200 1_555 B MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.928 ? metalc ? metalc4 C O2B GNP . A GNP 200 1_555 B MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? metalc ? metalc5 B MG MG . A MG 201 1_555 D O HOH . A HOH 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? metalc ? metalc6 B MG MG . A MG 201 1_555 D O HOH . A HOH 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1YZK _atom_sites.fract_transf_matrix[1][1] 0.013523 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013523 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006748 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 201 201 MG MG . C 3 GNP A 1 200 200 GNP GNP . D 4 HOH A 1 202 1 HOH HOH . D 4 HOH A 2 203 3 HOH HOH . D 4 HOH A 3 204 4 HOH HOH . D 4 HOH A 4 205 5 HOH HOH . D 4 HOH A 5 206 6 HOH HOH . D 4 HOH A 6 207 7 HOH HOH . D 4 HOH A 7 208 8 HOH HOH . D 4 HOH A 8 209 10 HOH HOH . D 4 HOH A 9 210 11 HOH HOH . D 4 HOH A 10 211 12 HOH HOH . D 4 HOH A 11 212 13 HOH HOH . D 4 HOH A 12 213 14 HOH HOH . D 4 HOH A 13 214 15 HOH HOH . D 4 HOH A 14 215 16 HOH HOH . D 4 HOH A 15 216 17 HOH HOH . D 4 HOH A 16 217 18 HOH HOH . D 4 HOH A 17 218 19 HOH HOH . D 4 HOH A 18 219 20 HOH HOH . D 4 HOH A 19 220 21 HOH HOH . D 4 HOH A 20 221 22 HOH HOH . D 4 HOH A 21 222 23 HOH HOH . D 4 HOH A 22 223 25 HOH HOH . D 4 HOH A 23 224 28 HOH HOH . D 4 HOH A 24 225 29 HOH HOH . D 4 HOH A 25 226 30 HOH HOH . D 4 HOH A 26 227 32 HOH HOH . D 4 HOH A 27 228 34 HOH HOH . D 4 HOH A 28 229 35 HOH HOH . D 4 HOH A 29 230 36 HOH HOH . D 4 HOH A 30 231 37 HOH HOH . D 4 HOH A 31 232 38 HOH HOH . D 4 HOH A 32 233 39 HOH HOH . D 4 HOH A 33 234 41 HOH HOH . D 4 HOH A 34 235 42 HOH HOH . D 4 HOH A 35 236 43 HOH HOH . D 4 HOH A 36 237 44 HOH HOH . D 4 HOH A 37 238 45 HOH HOH . D 4 HOH A 38 239 46 HOH HOH . D 4 HOH A 39 240 47 HOH HOH . D 4 HOH A 40 241 48 HOH HOH . D 4 HOH A 41 242 49 HOH HOH . D 4 HOH A 42 243 50 HOH HOH . D 4 HOH A 43 244 51 HOH HOH . D 4 HOH A 44 245 52 HOH HOH . D 4 HOH A 45 246 53 HOH HOH . D 4 HOH A 46 247 54 HOH HOH . D 4 HOH A 47 248 55 HOH HOH . D 4 HOH A 48 249 56 HOH HOH . D 4 HOH A 49 250 57 HOH HOH . D 4 HOH A 50 251 58 HOH HOH . D 4 HOH A 51 252 59 HOH HOH . D 4 HOH A 52 253 60 HOH HOH . D 4 HOH A 53 254 61 HOH HOH . D 4 HOH A 54 255 62 HOH HOH . D 4 HOH A 55 256 63 HOH HOH . D 4 HOH A 56 257 64 HOH HOH . D 4 HOH A 57 258 65 HOH HOH . D 4 HOH A 58 259 66 HOH HOH . D 4 HOH A 59 260 67 HOH HOH . D 4 HOH A 60 261 68 HOH HOH . D 4 HOH A 61 262 69 HOH HOH . D 4 HOH A 62 263 70 HOH HOH . D 4 HOH A 63 264 71 HOH HOH . D 4 HOH A 64 265 72 HOH HOH . D 4 HOH A 65 266 73 HOH HOH . D 4 HOH A 66 267 74 HOH HOH . D 4 HOH A 67 268 75 HOH HOH . D 4 HOH A 68 269 77 HOH HOH . D 4 HOH A 69 270 79 HOH HOH . D 4 HOH A 70 271 80 HOH HOH . D 4 HOH A 71 272 81 HOH HOH . D 4 HOH A 72 273 82 HOH HOH . D 4 HOH A 73 274 83 HOH HOH . D 4 HOH A 74 275 84 HOH HOH . D 4 HOH A 75 276 85 HOH HOH . D 4 HOH A 76 277 86 HOH HOH . D 4 HOH A 77 278 87 HOH HOH . D 4 HOH A 78 279 88 HOH HOH . D 4 HOH A 79 280 90 HOH HOH . D 4 HOH A 80 281 92 HOH HOH . D 4 HOH A 81 282 93 HOH HOH . D 4 HOH A 82 283 94 HOH HOH . D 4 HOH A 83 284 95 HOH HOH . D 4 HOH A 84 285 96 HOH HOH . D 4 HOH A 85 286 97 HOH HOH . D 4 HOH A 86 287 98 HOH HOH . D 4 HOH A 87 288 99 HOH HOH . D 4 HOH A 88 289 100 HOH HOH . D 4 HOH A 89 290 101 HOH HOH . D 4 HOH A 90 291 102 HOH HOH . D 4 HOH A 91 292 103 HOH HOH . D 4 HOH A 92 293 104 HOH HOH . D 4 HOH A 93 294 105 HOH HOH . D 4 HOH A 94 295 106 HOH HOH . D 4 HOH A 95 296 108 HOH HOH . D 4 HOH A 96 297 109 HOH HOH . D 4 HOH A 97 298 111 HOH HOH . D 4 HOH A 98 299 112 HOH HOH . D 4 HOH A 99 300 113 HOH HOH . D 4 HOH A 100 301 114 HOH HOH . D 4 HOH A 101 302 115 HOH HOH . D 4 HOH A 102 303 116 HOH HOH . D 4 HOH A 103 304 117 HOH HOH . D 4 HOH A 104 305 118 HOH HOH . D 4 HOH A 105 306 119 HOH HOH . D 4 HOH A 106 307 121 HOH HOH . D 4 HOH A 107 308 122 HOH HOH . D 4 HOH A 108 309 123 HOH HOH . D 4 HOH A 109 310 124 HOH HOH . D 4 HOH A 110 311 125 HOH HOH . D 4 HOH A 111 312 126 HOH HOH . D 4 HOH A 112 313 127 HOH HOH . D 4 HOH A 113 314 128 HOH HOH . D 4 HOH A 114 315 129 HOH HOH . D 4 HOH A 115 316 130 HOH HOH . D 4 HOH A 116 317 131 HOH HOH . D 4 HOH A 117 318 133 HOH HOH . D 4 HOH A 118 319 134 HOH HOH . D 4 HOH A 119 320 135 HOH HOH . D 4 HOH A 120 321 136 HOH HOH . D 4 HOH A 121 322 138 HOH HOH . D 4 HOH A 122 323 139 HOH HOH . D 4 HOH A 123 324 140 HOH HOH . D 4 HOH A 124 325 142 HOH HOH . D 4 HOH A 125 326 144 HOH HOH . D 4 HOH A 126 327 146 HOH HOH . D 4 HOH A 127 328 148 HOH HOH . D 4 HOH A 128 329 149 HOH HOH . D 4 HOH A 129 330 150 HOH HOH . D 4 HOH A 130 331 151 HOH HOH . D 4 HOH A 131 332 154 HOH HOH . D 4 HOH A 132 333 155 HOH HOH . D 4 HOH A 133 334 156 HOH HOH . D 4 HOH A 134 335 157 HOH HOH . D 4 HOH A 135 336 158 HOH HOH . D 4 HOH A 136 337 159 HOH HOH . D 4 HOH A 137 338 160 HOH HOH . D 4 HOH A 138 339 161 HOH HOH . D 4 HOH A 139 340 162 HOH HOH . D 4 HOH A 140 341 164 HOH HOH . D 4 HOH A 141 342 165 HOH HOH . D 4 HOH A 142 343 166 HOH HOH . D 4 HOH A 143 344 168 HOH HOH . D 4 HOH A 144 345 170 HOH HOH . D 4 HOH A 145 346 171 HOH HOH . D 4 HOH A 146 347 172 HOH HOH . D 4 HOH A 147 348 173 HOH HOH . D 4 HOH A 148 349 176 HOH HOH . D 4 HOH A 149 350 177 HOH HOH . D 4 HOH A 150 351 178 HOH HOH . D 4 HOH A 151 352 179 HOH HOH . D 4 HOH A 152 353 181 HOH HOH . D 4 HOH A 153 354 183 HOH HOH . D 4 HOH A 154 355 184 HOH HOH . D 4 HOH A 155 356 185 HOH HOH . D 4 HOH A 156 357 186 HOH HOH . D 4 HOH A 157 358 187 HOH HOH . D 4 HOH A 158 359 188 HOH HOH . D 4 HOH A 159 360 189 HOH HOH . D 4 HOH A 160 361 190 HOH HOH . D 4 HOH A 161 362 193 HOH HOH . D 4 HOH A 162 363 194 HOH HOH . D 4 HOH A 163 364 195 HOH HOH . D 4 HOH A 164 365 196 HOH HOH . D 4 HOH A 165 366 198 HOH HOH . D 4 HOH A 166 367 199 HOH HOH . D 4 HOH A 167 368 202 HOH HOH . D 4 HOH A 168 369 205 HOH HOH . D 4 HOH A 169 370 206 HOH HOH . D 4 HOH A 170 371 208 HOH HOH . D 4 HOH A 171 372 209 HOH HOH . D 4 HOH A 172 373 211 HOH HOH . D 4 HOH A 173 374 212 HOH HOH . D 4 HOH A 174 375 217 HOH HOH . D 4 HOH A 175 376 220 HOH HOH . D 4 HOH A 176 377 223 HOH HOH . D 4 HOH A 177 378 224 HOH HOH . D 4 HOH A 178 379 225 HOH HOH . D 4 HOH A 179 380 227 HOH HOH . D 4 HOH A 180 381 228 HOH HOH . D 4 HOH A 181 382 233 HOH HOH . D 4 HOH A 182 383 234 HOH HOH . D 4 HOH A 183 384 235 HOH HOH . D 4 HOH A 184 385 238 HOH HOH . D 4 HOH A 185 386 240 HOH HOH . D 4 HOH A 186 387 242 HOH HOH . D 4 HOH A 187 388 243 HOH HOH . D 4 HOH A 188 389 247 HOH HOH . D 4 HOH A 189 390 248 HOH HOH . D 4 HOH A 190 391 249 HOH HOH . D 4 HOH A 191 392 257 HOH HOH . D 4 HOH A 192 393 258 HOH HOH . D 4 HOH A 193 394 259 HOH HOH . D 4 HOH A 194 395 260 HOH HOH . D 4 HOH A 195 396 263 HOH HOH . D 4 HOH A 196 397 265 HOH HOH . D 4 HOH A 197 398 268 HOH HOH . D 4 HOH A 198 399 271 HOH HOH . D 4 HOH A 199 400 273 HOH HOH . D 4 HOH A 200 401 274 HOH HOH . D 4 HOH A 201 402 277 HOH HOH . D 4 HOH A 202 403 278 HOH HOH . D 4 HOH A 203 404 280 HOH HOH . D 4 HOH A 204 405 287 HOH HOH . D 4 HOH A 205 406 291 HOH HOH . D 4 HOH A 206 407 298 HOH HOH . D 4 HOH A 207 408 305 HOH HOH . D 4 HOH A 208 409 316 HOH HOH . D 4 HOH A 209 410 319 HOH HOH . D 4 HOH A 210 411 321 HOH HOH . D 4 HOH A 211 412 322 HOH HOH . D 4 HOH A 212 413 331 HOH HOH . D 4 HOH A 213 414 341 HOH HOH . D 4 HOH A 214 415 342 HOH HOH . D 4 HOH A 215 416 343 HOH HOH . D 4 HOH A 216 417 344 HOH HOH . D 4 HOH A 217 418 345 HOH HOH . D 4 HOH A 218 419 346 HOH HOH . D 4 HOH A 219 420 347 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 8.386 _atom_site.Cartn_y 15.901 _atom_site.Cartn_z 7.375 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 19.59 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 201 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #