data_1YZL # _model_server_result.job_id xo7etXOo5GKwlgfRrmgJWA _model_server_result.datetime_utc '2024-11-04 22:44:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1yzl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 1YZL # _exptl.entry_id 1YZL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1YZL _cell.length_a 68.325 _cell.length_b 68.325 _cell.length_c 83.229 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YZL _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 25 A SER 21 1_555 B MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc2 A OG1 THR 43 A THR 39 1_555 B MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc3 C O2G GNP . A GNP 400 1_555 B MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? metalc ? metalc4 C O2B GNP . A GNP 400 1_555 B MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc5 B MG MG . A MG 401 1_555 D O HOH . A HOH 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc6 B MG MG . A MG 401 1_555 D O HOH . A HOH 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1YZL _atom_sites.fract_transf_matrix[1][1] 0.014636 _atom_sites.fract_transf_matrix[1][2] 0.00845 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0169 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012015 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 401 201 MG MG . C 3 GNP A 1 400 200 GNP GNP . D 4 HOH A 1 402 1 HOH HOH . D 4 HOH A 2 403 2 HOH HOH . D 4 HOH A 3 404 3 HOH HOH . D 4 HOH A 4 405 4 HOH HOH . D 4 HOH A 5 406 5 HOH HOH . D 4 HOH A 6 407 6 HOH HOH . D 4 HOH A 7 408 7 HOH HOH . D 4 HOH A 8 409 8 HOH HOH . D 4 HOH A 9 410 9 HOH HOH . D 4 HOH A 10 411 10 HOH HOH . D 4 HOH A 11 412 13 HOH HOH . D 4 HOH A 12 413 14 HOH HOH . D 4 HOH A 13 414 15 HOH HOH . D 4 HOH A 14 415 16 HOH HOH . D 4 HOH A 15 416 17 HOH HOH . D 4 HOH A 16 417 19 HOH HOH . D 4 HOH A 17 418 20 HOH HOH . D 4 HOH A 18 419 21 HOH HOH . D 4 HOH A 19 420 22 HOH HOH . D 4 HOH A 20 421 23 HOH HOH . D 4 HOH A 21 422 24 HOH HOH . D 4 HOH A 22 423 25 HOH HOH . D 4 HOH A 23 424 27 HOH HOH . D 4 HOH A 24 425 28 HOH HOH . D 4 HOH A 25 426 30 HOH HOH . D 4 HOH A 26 427 31 HOH HOH . D 4 HOH A 27 428 32 HOH HOH . D 4 HOH A 28 429 33 HOH HOH . D 4 HOH A 29 430 34 HOH HOH . D 4 HOH A 30 431 35 HOH HOH . D 4 HOH A 31 432 36 HOH HOH . D 4 HOH A 32 433 38 HOH HOH . D 4 HOH A 33 434 39 HOH HOH . D 4 HOH A 34 435 40 HOH HOH . D 4 HOH A 35 436 41 HOH HOH . D 4 HOH A 36 437 42 HOH HOH . D 4 HOH A 37 438 43 HOH HOH . D 4 HOH A 38 439 44 HOH HOH . D 4 HOH A 39 440 45 HOH HOH . D 4 HOH A 40 441 46 HOH HOH . D 4 HOH A 41 442 47 HOH HOH . D 4 HOH A 42 443 48 HOH HOH . D 4 HOH A 43 444 49 HOH HOH . D 4 HOH A 44 445 50 HOH HOH . D 4 HOH A 45 446 51 HOH HOH . D 4 HOH A 46 447 52 HOH HOH . D 4 HOH A 47 448 53 HOH HOH . D 4 HOH A 48 449 54 HOH HOH . D 4 HOH A 49 450 55 HOH HOH . D 4 HOH A 50 451 56 HOH HOH . D 4 HOH A 51 452 58 HOH HOH . D 4 HOH A 52 453 59 HOH HOH . D 4 HOH A 53 454 60 HOH HOH . D 4 HOH A 54 455 61 HOH HOH . D 4 HOH A 55 456 62 HOH HOH . D 4 HOH A 56 457 63 HOH HOH . D 4 HOH A 57 458 64 HOH HOH . D 4 HOH A 58 459 65 HOH HOH . D 4 HOH A 59 460 66 HOH HOH . D 4 HOH A 60 461 67 HOH HOH . D 4 HOH A 61 462 68 HOH HOH . D 4 HOH A 62 463 70 HOH HOH . D 4 HOH A 63 464 71 HOH HOH . D 4 HOH A 64 465 72 HOH HOH . D 4 HOH A 65 466 73 HOH HOH . D 4 HOH A 66 467 74 HOH HOH . D 4 HOH A 67 468 75 HOH HOH . D 4 HOH A 68 469 76 HOH HOH . D 4 HOH A 69 470 77 HOH HOH . D 4 HOH A 70 471 78 HOH HOH . D 4 HOH A 71 472 79 HOH HOH . D 4 HOH A 72 473 80 HOH HOH . D 4 HOH A 73 474 81 HOH HOH . D 4 HOH A 74 475 82 HOH HOH . D 4 HOH A 75 476 84 HOH HOH . D 4 HOH A 76 477 86 HOH HOH . D 4 HOH A 77 478 87 HOH HOH . D 4 HOH A 78 479 88 HOH HOH . D 4 HOH A 79 480 89 HOH HOH . D 4 HOH A 80 481 90 HOH HOH . D 4 HOH A 81 482 91 HOH HOH . D 4 HOH A 82 483 92 HOH HOH . D 4 HOH A 83 484 94 HOH HOH . D 4 HOH A 84 485 95 HOH HOH . D 4 HOH A 85 486 96 HOH HOH . D 4 HOH A 86 487 98 HOH HOH . D 4 HOH A 87 488 99 HOH HOH . D 4 HOH A 88 489 100 HOH HOH . D 4 HOH A 89 490 101 HOH HOH . D 4 HOH A 90 491 103 HOH HOH . D 4 HOH A 91 492 104 HOH HOH . D 4 HOH A 92 493 105 HOH HOH . D 4 HOH A 93 494 106 HOH HOH . D 4 HOH A 94 495 107 HOH HOH . D 4 HOH A 95 496 108 HOH HOH . D 4 HOH A 96 497 109 HOH HOH . D 4 HOH A 97 498 110 HOH HOH . D 4 HOH A 98 499 112 HOH HOH . D 4 HOH A 99 500 113 HOH HOH . D 4 HOH A 100 501 114 HOH HOH . D 4 HOH A 101 502 118 HOH HOH . D 4 HOH A 102 503 119 HOH HOH . D 4 HOH A 103 504 121 HOH HOH . D 4 HOH A 104 505 122 HOH HOH . D 4 HOH A 105 506 123 HOH HOH . D 4 HOH A 106 507 124 HOH HOH . D 4 HOH A 107 508 125 HOH HOH . D 4 HOH A 108 509 126 HOH HOH . D 4 HOH A 109 510 128 HOH HOH . D 4 HOH A 110 511 129 HOH HOH . D 4 HOH A 111 512 131 HOH HOH . D 4 HOH A 112 513 135 HOH HOH . D 4 HOH A 113 514 137 HOH HOH . D 4 HOH A 114 515 140 HOH HOH . D 4 HOH A 115 516 141 HOH HOH . D 4 HOH A 116 517 142 HOH HOH . D 4 HOH A 117 518 143 HOH HOH . D 4 HOH A 118 519 144 HOH HOH . D 4 HOH A 119 520 145 HOH HOH . D 4 HOH A 120 521 146 HOH HOH . D 4 HOH A 121 522 147 HOH HOH . D 4 HOH A 122 523 149 HOH HOH . D 4 HOH A 123 524 150 HOH HOH . D 4 HOH A 124 525 151 HOH HOH . D 4 HOH A 125 526 152 HOH HOH . D 4 HOH A 126 527 156 HOH HOH . D 4 HOH A 127 528 157 HOH HOH . D 4 HOH A 128 529 158 HOH HOH . D 4 HOH A 129 530 160 HOH HOH . D 4 HOH A 130 531 161 HOH HOH . D 4 HOH A 131 532 163 HOH HOH . D 4 HOH A 132 533 164 HOH HOH . D 4 HOH A 133 534 165 HOH HOH . D 4 HOH A 134 535 166 HOH HOH . D 4 HOH A 135 536 167 HOH HOH . D 4 HOH A 136 537 168 HOH HOH . D 4 HOH A 137 538 172 HOH HOH . D 4 HOH A 138 539 173 HOH HOH . D 4 HOH A 139 540 174 HOH HOH . D 4 HOH A 140 541 175 HOH HOH . D 4 HOH A 141 542 176 HOH HOH . D 4 HOH A 142 543 178 HOH HOH . D 4 HOH A 143 544 179 HOH HOH . D 4 HOH A 144 545 181 HOH HOH . D 4 HOH A 145 546 182 HOH HOH . D 4 HOH A 146 547 184 HOH HOH . D 4 HOH A 147 548 186 HOH HOH . D 4 HOH A 148 549 187 HOH HOH . D 4 HOH A 149 550 188 HOH HOH . D 4 HOH A 150 551 189 HOH HOH . D 4 HOH A 151 552 190 HOH HOH . D 4 HOH A 152 553 191 HOH HOH . D 4 HOH A 153 554 192 HOH HOH . D 4 HOH A 154 555 193 HOH HOH . D 4 HOH A 155 556 194 HOH HOH . D 4 HOH A 156 557 197 HOH HOH . D 4 HOH A 157 558 198 HOH HOH . D 4 HOH A 158 559 199 HOH HOH . D 4 HOH A 159 560 201 HOH HOH . D 4 HOH A 160 561 202 HOH HOH . D 4 HOH A 161 562 203 HOH HOH . D 4 HOH A 162 563 204 HOH HOH . D 4 HOH A 163 564 205 HOH HOH . D 4 HOH A 164 565 206 HOH HOH . D 4 HOH A 165 566 207 HOH HOH . D 4 HOH A 166 567 208 HOH HOH . D 4 HOH A 167 568 209 HOH HOH . D 4 HOH A 168 569 210 HOH HOH . D 4 HOH A 169 570 211 HOH HOH . D 4 HOH A 170 571 214 HOH HOH . D 4 HOH A 171 572 215 HOH HOH . D 4 HOH A 172 573 216 HOH HOH . D 4 HOH A 173 574 217 HOH HOH . D 4 HOH A 174 575 218 HOH HOH . D 4 HOH A 175 576 219 HOH HOH . D 4 HOH A 176 577 220 HOH HOH . D 4 HOH A 177 578 221 HOH HOH . D 4 HOH A 178 579 223 HOH HOH . D 4 HOH A 179 580 226 HOH HOH . D 4 HOH A 180 581 228 HOH HOH . D 4 HOH A 181 582 230 HOH HOH . D 4 HOH A 182 583 231 HOH HOH . D 4 HOH A 183 584 233 HOH HOH . D 4 HOH A 184 585 234 HOH HOH . D 4 HOH A 185 586 237 HOH HOH . D 4 HOH A 186 587 238 HOH HOH . D 4 HOH A 187 588 239 HOH HOH . D 4 HOH A 188 589 240 HOH HOH . D 4 HOH A 189 590 241 HOH HOH . D 4 HOH A 190 591 242 HOH HOH . D 4 HOH A 191 592 243 HOH HOH . D 4 HOH A 192 593 245 HOH HOH . D 4 HOH A 193 594 247 HOH HOH . D 4 HOH A 194 595 253 HOH HOH . D 4 HOH A 195 596 256 HOH HOH . D 4 HOH A 196 597 259 HOH HOH . D 4 HOH A 197 598 262 HOH HOH . D 4 HOH A 198 599 263 HOH HOH . D 4 HOH A 199 600 264 HOH HOH . D 4 HOH A 200 601 266 HOH HOH . D 4 HOH A 201 602 267 HOH HOH . D 4 HOH A 202 603 268 HOH HOH . D 4 HOH A 203 604 271 HOH HOH . D 4 HOH A 204 605 272 HOH HOH . D 4 HOH A 205 606 273 HOH HOH . D 4 HOH A 206 607 274 HOH HOH . D 4 HOH A 207 608 276 HOH HOH . D 4 HOH A 208 609 277 HOH HOH . D 4 HOH A 209 610 278 HOH HOH . D 4 HOH A 210 611 280 HOH HOH . D 4 HOH A 211 612 281 HOH HOH . D 4 HOH A 212 613 282 HOH HOH . D 4 HOH A 213 614 283 HOH HOH . D 4 HOH A 214 615 284 HOH HOH . D 4 HOH A 215 616 288 HOH HOH . D 4 HOH A 216 617 289 HOH HOH . D 4 HOH A 217 618 290 HOH HOH . D 4 HOH A 218 619 292 HOH HOH . D 4 HOH A 219 620 295 HOH HOH . D 4 HOH A 220 621 296 HOH HOH . D 4 HOH A 221 622 297 HOH HOH . D 4 HOH A 222 623 298 HOH HOH . D 4 HOH A 223 624 300 HOH HOH . D 4 HOH A 224 625 301 HOH HOH . D 4 HOH A 225 626 303 HOH HOH . D 4 HOH A 226 627 304 HOH HOH . D 4 HOH A 227 628 306 HOH HOH . D 4 HOH A 228 629 308 HOH HOH . D 4 HOH A 229 630 309 HOH HOH . D 4 HOH A 230 631 311 HOH HOH . D 4 HOH A 231 632 314 HOH HOH . D 4 HOH A 232 633 315 HOH HOH . D 4 HOH A 233 634 318 HOH HOH . D 4 HOH A 234 635 319 HOH HOH . D 4 HOH A 235 636 328 HOH HOH . D 4 HOH A 236 637 332 HOH HOH . D 4 HOH A 237 638 333 HOH HOH . D 4 HOH A 238 639 336 HOH HOH . D 4 HOH A 239 640 338 HOH HOH . D 4 HOH A 240 641 339 HOH HOH . D 4 HOH A 241 642 344 HOH HOH . D 4 HOH A 242 643 348 HOH HOH . D 4 HOH A 243 644 350 HOH HOH . D 4 HOH A 244 645 352 HOH HOH . D 4 HOH A 245 646 353 HOH HOH . D 4 HOH A 246 647 354 HOH HOH . D 4 HOH A 247 648 355 HOH HOH . D 4 HOH A 248 649 356 HOH HOH . D 4 HOH A 249 650 357 HOH HOH . D 4 HOH A 250 651 358 HOH HOH . D 4 HOH A 251 652 359 HOH HOH . D 4 HOH A 252 653 363 HOH HOH . D 4 HOH A 253 654 364 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x -13.062 _atom_site.Cartn_y 52.471 _atom_site.Cartn_z 23.307 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 19.83 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 401 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 250 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #