data_1YZN # _model_server_result.job_id YQHfxy56zOxx2zxOQkpnLw _model_server_result.datetime_utc '2024-11-16 07:32:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1yzn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 1YZN # _exptl.entry_id 1YZN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1YZN _cell.length_a 39.011 _cell.length_b 56.93 _cell.length_c 74.72 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YZN _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 35 A SER 22 1_555 B MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc2 A OG1 THR 53 A THR 40 1_555 B MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc3 C O2G GNP . A GNP 300 1_555 B MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.919 ? metalc ? metalc4 C O2B GNP . A GNP 300 1_555 B MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc5 B MG MG . A MG 301 1_555 D O HOH . A HOH 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc6 B MG MG . A MG 301 1_555 D O HOH . A HOH 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1YZN _atom_sites.fract_transf_matrix[1][1] 0.025634 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017565 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013383 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 301 201 MG MG . C 3 GNP A 1 300 200 GNP GNP . D 4 HOH A 1 302 1 HOH HOH . D 4 HOH A 2 303 2 HOH HOH . D 4 HOH A 3 304 3 HOH HOH . D 4 HOH A 4 305 4 HOH HOH . D 4 HOH A 5 306 5 HOH HOH . D 4 HOH A 6 307 6 HOH HOH . D 4 HOH A 7 308 8 HOH HOH . D 4 HOH A 8 309 9 HOH HOH . D 4 HOH A 9 310 10 HOH HOH . D 4 HOH A 10 311 14 HOH HOH . D 4 HOH A 11 312 15 HOH HOH . D 4 HOH A 12 313 16 HOH HOH . D 4 HOH A 13 314 17 HOH HOH . D 4 HOH A 14 315 18 HOH HOH . D 4 HOH A 15 316 20 HOH HOH . D 4 HOH A 16 317 21 HOH HOH . D 4 HOH A 17 318 22 HOH HOH . D 4 HOH A 18 319 24 HOH HOH . D 4 HOH A 19 320 25 HOH HOH . D 4 HOH A 20 321 26 HOH HOH . D 4 HOH A 21 322 27 HOH HOH . D 4 HOH A 22 323 28 HOH HOH . D 4 HOH A 23 324 29 HOH HOH . D 4 HOH A 24 325 31 HOH HOH . D 4 HOH A 25 326 32 HOH HOH . D 4 HOH A 26 327 33 HOH HOH . D 4 HOH A 27 328 35 HOH HOH . D 4 HOH A 28 329 37 HOH HOH . D 4 HOH A 29 330 38 HOH HOH . D 4 HOH A 30 331 39 HOH HOH . D 4 HOH A 31 332 40 HOH HOH . D 4 HOH A 32 333 41 HOH HOH . D 4 HOH A 33 334 42 HOH HOH . D 4 HOH A 34 335 43 HOH HOH . D 4 HOH A 35 336 44 HOH HOH . D 4 HOH A 36 337 45 HOH HOH . D 4 HOH A 37 338 46 HOH HOH . D 4 HOH A 38 339 48 HOH HOH . D 4 HOH A 39 340 49 HOH HOH . D 4 HOH A 40 341 50 HOH HOH . D 4 HOH A 41 342 53 HOH HOH . D 4 HOH A 42 343 54 HOH HOH . D 4 HOH A 43 344 55 HOH HOH . D 4 HOH A 44 345 56 HOH HOH . D 4 HOH A 45 346 57 HOH HOH . D 4 HOH A 46 347 59 HOH HOH . D 4 HOH A 47 348 60 HOH HOH . D 4 HOH A 48 349 61 HOH HOH . D 4 HOH A 49 350 63 HOH HOH . D 4 HOH A 50 351 64 HOH HOH . D 4 HOH A 51 352 65 HOH HOH . D 4 HOH A 52 353 67 HOH HOH . D 4 HOH A 53 354 68 HOH HOH . D 4 HOH A 54 355 69 HOH HOH . D 4 HOH A 55 356 70 HOH HOH . D 4 HOH A 56 357 71 HOH HOH . D 4 HOH A 57 358 72 HOH HOH . D 4 HOH A 58 359 75 HOH HOH . D 4 HOH A 59 360 76 HOH HOH . D 4 HOH A 60 361 77 HOH HOH . D 4 HOH A 61 362 78 HOH HOH . D 4 HOH A 62 363 79 HOH HOH . D 4 HOH A 63 364 80 HOH HOH . D 4 HOH A 64 365 81 HOH HOH . D 4 HOH A 65 366 82 HOH HOH . D 4 HOH A 66 367 84 HOH HOH . D 4 HOH A 67 368 85 HOH HOH . D 4 HOH A 68 369 86 HOH HOH . D 4 HOH A 69 370 87 HOH HOH . D 4 HOH A 70 371 88 HOH HOH . D 4 HOH A 71 372 89 HOH HOH . D 4 HOH A 72 373 90 HOH HOH . D 4 HOH A 73 374 91 HOH HOH . D 4 HOH A 74 375 92 HOH HOH . D 4 HOH A 75 376 93 HOH HOH . D 4 HOH A 76 377 94 HOH HOH . D 4 HOH A 77 378 96 HOH HOH . D 4 HOH A 78 379 97 HOH HOH . D 4 HOH A 79 380 99 HOH HOH . D 4 HOH A 80 381 100 HOH HOH . D 4 HOH A 81 382 102 HOH HOH . D 4 HOH A 82 383 103 HOH HOH . D 4 HOH A 83 384 105 HOH HOH . D 4 HOH A 84 385 106 HOH HOH . D 4 HOH A 85 386 107 HOH HOH . D 4 HOH A 86 387 108 HOH HOH . D 4 HOH A 87 388 110 HOH HOH . D 4 HOH A 88 389 111 HOH HOH . D 4 HOH A 89 390 112 HOH HOH . D 4 HOH A 90 391 113 HOH HOH . D 4 HOH A 91 392 114 HOH HOH . D 4 HOH A 92 393 115 HOH HOH . D 4 HOH A 93 394 116 HOH HOH . D 4 HOH A 94 395 117 HOH HOH . D 4 HOH A 95 396 118 HOH HOH . D 4 HOH A 96 397 120 HOH HOH . D 4 HOH A 97 398 121 HOH HOH . D 4 HOH A 98 399 123 HOH HOH . D 4 HOH A 99 400 124 HOH HOH . D 4 HOH A 100 401 126 HOH HOH . D 4 HOH A 101 402 127 HOH HOH . D 4 HOH A 102 403 129 HOH HOH . D 4 HOH A 103 404 130 HOH HOH . D 4 HOH A 104 405 131 HOH HOH . D 4 HOH A 105 406 132 HOH HOH . D 4 HOH A 106 407 133 HOH HOH . D 4 HOH A 107 408 136 HOH HOH . D 4 HOH A 108 409 137 HOH HOH . D 4 HOH A 109 410 140 HOH HOH . D 4 HOH A 110 411 141 HOH HOH . D 4 HOH A 111 412 142 HOH HOH . D 4 HOH A 112 413 143 HOH HOH . D 4 HOH A 113 414 144 HOH HOH . D 4 HOH A 114 415 146 HOH HOH . D 4 HOH A 115 416 147 HOH HOH . D 4 HOH A 116 417 150 HOH HOH . D 4 HOH A 117 418 151 HOH HOH . D 4 HOH A 118 419 152 HOH HOH . D 4 HOH A 119 420 153 HOH HOH . D 4 HOH A 120 421 155 HOH HOH . D 4 HOH A 121 422 156 HOH HOH . D 4 HOH A 122 423 157 HOH HOH . D 4 HOH A 123 424 158 HOH HOH . D 4 HOH A 124 425 159 HOH HOH . D 4 HOH A 125 426 161 HOH HOH . D 4 HOH A 126 427 164 HOH HOH . D 4 HOH A 127 428 165 HOH HOH . D 4 HOH A 128 429 167 HOH HOH . D 4 HOH A 129 430 169 HOH HOH . D 4 HOH A 130 431 170 HOH HOH . D 4 HOH A 131 432 171 HOH HOH . D 4 HOH A 132 433 172 HOH HOH . D 4 HOH A 133 434 173 HOH HOH . D 4 HOH A 134 435 175 HOH HOH . D 4 HOH A 135 436 176 HOH HOH . D 4 HOH A 136 437 177 HOH HOH . D 4 HOH A 137 438 181 HOH HOH . D 4 HOH A 138 439 183 HOH HOH . D 4 HOH A 139 440 184 HOH HOH . D 4 HOH A 140 441 185 HOH HOH . D 4 HOH A 141 442 186 HOH HOH . D 4 HOH A 142 443 188 HOH HOH . D 4 HOH A 143 444 191 HOH HOH . D 4 HOH A 144 445 192 HOH HOH . D 4 HOH A 145 446 193 HOH HOH . D 4 HOH A 146 447 195 HOH HOH . D 4 HOH A 147 448 196 HOH HOH . D 4 HOH A 148 449 198 HOH HOH . D 4 HOH A 149 450 199 HOH HOH . D 4 HOH A 150 451 200 HOH HOH . D 4 HOH A 151 452 201 HOH HOH . D 4 HOH A 152 453 203 HOH HOH . D 4 HOH A 153 454 204 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 4.153 _atom_site.Cartn_y 24.101 _atom_site.Cartn_z 8.353 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 17.21 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 301 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #