data_1Z06
#
_model_server_result.job_id            '_Vve3y4tslcxw7Qlo0iwjw' 
_model_server_result.datetime_utc      '2024-10-25 20:26:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1z06 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":204}' 
#
_entry.id    1Z06 
#
_exptl.entry_id    1Z06 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              522.196 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1Z06 
_cell.length_a            56.194 
_cell.length_b            56.194 
_cell.length_c            55.039 
_cell.Z_PDB               3 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1Z06 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        145 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG1 THR 34 A THR 47 1_555 B MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? 
metalc ? metalc2 A OG1 THR 52 A THR 65 1_555 B MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? 
metalc ? metalc3 B MG MG . A MG 203 1_555 C O2G GNP . A GNP 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
metalc ? metalc4 B MG MG . A MG 203 1_555 C O2B GNP . A GNP 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? 
metalc ? metalc5 B MG MG . A MG 203 1_555 D O HOH . A HOH 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? 
metalc ? metalc6 B MG MG . A MG 203 1_555 D O HOH . A HOH 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? 
#
_chem_comp.formula           'C10 H17 N6 O13 P3' 
_chem_comp.formula_weight    522.196 
_chem_comp.id                GNP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G GNP doub 129 n n 
PG O2G GNP sing 130 n n 
PG O3G GNP sing 131 n n 
PG N3B GNP sing 132 n n 
O2G HOG2 GNP sing 133 n n 
O3G HOG3 GNP sing 134 n n 
N3B PB GNP sing 135 n n 
N3B HNB3 GNP sing 136 n n 
PB O1B GNP doub 137 n n 
PB O2B GNP sing 138 n n 
PB O3A GNP sing 139 n n 
O2B HOB2 GNP sing 140 n n 
O3A PA GNP sing 141 n n 
PA O1A GNP doub 142 n n 
PA O2A GNP sing 143 n n 
PA O5' GNP sing 144 n n 
O2A HOA2 GNP sing 145 n n 
O5' C5' GNP sing 146 n n 
C5' C4' GNP sing 147 n n 
C5' "H5'2" GNP sing 148 n n 
C5' "H5'1" GNP sing 149 n n 
C4' O4' GNP sing 150 n n 
C4' C3' GNP sing 151 n n 
C4' H4' GNP sing 152 n n 
O4' C1' GNP sing 153 n n 
C3' O3' GNP sing 154 n n 
C3' C2' GNP sing 155 n n 
C3' H3' GNP sing 156 n n 
O3' HO3' GNP sing 157 n n 
C2' O2' GNP sing 158 n n 
C2' C1' GNP sing 159 n n 
C2' H2' GNP sing 160 n n 
O2' HO2' GNP sing 161 n n 
C1' N9 GNP sing 162 n n 
C1' H1' GNP sing 163 n n 
N9 C8 GNP sing 164 n y 
N9 C4 GNP sing 165 n y 
C8 N7 GNP doub 166 n y 
C8 H8 GNP sing 167 n n 
N7 C5 GNP sing 168 n y 
C5 C6 GNP sing 169 n y 
C5 C4 GNP doub 170 n y 
C6 O6 GNP doub 171 n n 
C6 N1 GNP sing 172 n y 
N1 C2 GNP sing 173 n y 
N1 HN1 GNP sing 174 n n 
C2 N2 GNP sing 175 n n 
C2 N3 GNP doub 176 n y 
N2 HN21 GNP sing 177 n n 
N2 HN22 GNP sing 178 n n 
N3 C4 GNP sing 179 n y 
#
_atom_sites.entry_id                     1Z06 
_atom_sites.fract_transf_matrix[1][1]    0.017795 
_atom_sites.fract_transf_matrix[1][2]    0.010274 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020548 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.018169 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 203 201 MG MG . 
C 3 GNP A 1 204 200 GNP GNP . 
D 4 HOH A 1 205 1 HOH HOH . 
D 4 HOH A 2 206 2 HOH HOH . 
D 4 HOH A 3 207 3 HOH HOH . 
D 4 HOH A 4 208 5 HOH HOH . 
D 4 HOH A 5 209 7 HOH HOH . 
D 4 HOH A 6 210 8 HOH HOH . 
D 4 HOH A 7 211 11 HOH HOH . 
D 4 HOH A 8 212 12 HOH HOH . 
D 4 HOH A 9 213 13 HOH HOH . 
D 4 HOH A 10 214 14 HOH HOH . 
D 4 HOH A 11 215 15 HOH HOH . 
D 4 HOH A 12 216 16 HOH HOH . 
D 4 HOH A 13 217 17 HOH HOH . 
D 4 HOH A 14 218 19 HOH HOH . 
D 4 HOH A 15 219 22 HOH HOH . 
D 4 HOH A 16 220 23 HOH HOH . 
D 4 HOH A 17 221 24 HOH HOH . 
D 4 HOH A 18 222 25 HOH HOH . 
D 4 HOH A 19 223 26 HOH HOH . 
D 4 HOH A 20 224 27 HOH HOH . 
D 4 HOH A 21 225 28 HOH HOH . 
D 4 HOH A 22 226 29 HOH HOH . 
D 4 HOH A 23 227 30 HOH HOH . 
D 4 HOH A 24 228 31 HOH HOH . 
D 4 HOH A 25 229 32 HOH HOH . 
D 4 HOH A 26 230 33 HOH HOH . 
D 4 HOH A 27 231 35 HOH HOH . 
D 4 HOH A 28 232 36 HOH HOH . 
D 4 HOH A 29 233 37 HOH HOH . 
D 4 HOH A 30 234 38 HOH HOH . 
D 4 HOH A 31 235 39 HOH HOH . 
D 4 HOH A 32 236 40 HOH HOH . 
D 4 HOH A 33 237 41 HOH HOH . 
D 4 HOH A 34 238 42 HOH HOH . 
D 4 HOH A 35 239 43 HOH HOH . 
D 4 HOH A 36 240 44 HOH HOH . 
D 4 HOH A 37 241 45 HOH HOH . 
D 4 HOH A 38 242 46 HOH HOH . 
D 4 HOH A 39 243 49 HOH HOH . 
D 4 HOH A 40 244 50 HOH HOH . 
D 4 HOH A 41 245 51 HOH HOH . 
D 4 HOH A 42 246 52 HOH HOH . 
D 4 HOH A 43 247 53 HOH HOH . 
D 4 HOH A 44 248 54 HOH HOH . 
D 4 HOH A 45 249 56 HOH HOH . 
D 4 HOH A 46 250 58 HOH HOH . 
D 4 HOH A 47 251 59 HOH HOH . 
D 4 HOH A 48 252 60 HOH HOH . 
D 4 HOH A 49 253 61 HOH HOH . 
D 4 HOH A 50 254 62 HOH HOH . 
D 4 HOH A 51 255 63 HOH HOH . 
D 4 HOH A 52 256 65 HOH HOH . 
D 4 HOH A 53 257 66 HOH HOH . 
D 4 HOH A 54 258 69 HOH HOH . 
D 4 HOH A 55 259 73 HOH HOH . 
D 4 HOH A 56 260 74 HOH HOH . 
D 4 HOH A 57 261 75 HOH HOH . 
D 4 HOH A 58 262 76 HOH HOH . 
D 4 HOH A 59 263 78 HOH HOH . 
D 4 HOH A 60 264 79 HOH HOH . 
D 4 HOH A 61 265 84 HOH HOH . 
D 4 HOH A 62 266 85 HOH HOH . 
D 4 HOH A 63 267 86 HOH HOH . 
D 4 HOH A 64 268 87 HOH HOH . 
D 4 HOH A 65 269 88 HOH HOH . 
D 4 HOH A 66 270 89 HOH HOH . 
D 4 HOH A 67 271 91 HOH HOH . 
D 4 HOH A 68 272 92 HOH HOH . 
D 4 HOH A 69 273 93 HOH HOH . 
D 4 HOH A 70 274 95 HOH HOH . 
D 4 HOH A 71 275 97 HOH HOH . 
D 4 HOH A 72 276 99 HOH HOH . 
D 4 HOH A 73 277 101 HOH HOH . 
D 4 HOH A 74 278 102 HOH HOH . 
D 4 HOH A 75 279 104 HOH HOH . 
D 4 HOH A 76 280 105 HOH HOH . 
D 4 HOH A 77 281 106 HOH HOH . 
D 4 HOH A 78 282 108 HOH HOH . 
D 4 HOH A 79 283 110 HOH HOH . 
D 4 HOH A 80 284 111 HOH HOH . 
D 4 HOH A 81 285 114 HOH HOH . 
D 4 HOH A 82 286 115 HOH HOH . 
D 4 HOH A 83 287 117 HOH HOH . 
D 4 HOH A 84 288 118 HOH HOH . 
D 4 HOH A 85 289 120 HOH HOH . 
D 4 HOH A 86 290 121 HOH HOH . 
D 4 HOH A 87 291 122 HOH HOH . 
D 4 HOH A 88 292 123 HOH HOH . 
D 4 HOH A 89 293 127 HOH HOH . 
D 4 HOH A 90 294 129 HOH HOH . 
D 4 HOH A 91 295 132 HOH HOH . 
D 4 HOH A 92 296 133 HOH HOH . 
D 4 HOH A 93 297 136 HOH HOH . 
D 4 HOH A 94 298 137 HOH HOH . 
D 4 HOH A 95 299 140 HOH HOH . 
D 4 HOH A 96 300 141 HOH HOH . 
D 4 HOH A 97 301 142 HOH HOH . 
D 4 HOH A 98 302 144 HOH HOH . 
D 4 HOH A 99 303 145 HOH HOH . 
D 4 HOH A 100 304 147 HOH HOH . 
D 4 HOH A 101 305 150 HOH HOH . 
D 4 HOH A 102 306 151 HOH HOH . 
D 4 HOH A 103 307 152 HOH HOH . 
D 4 HOH A 104 308 154 HOH HOH . 
D 4 HOH A 105 309 156 HOH HOH . 
D 4 HOH A 106 310 159 HOH HOH . 
D 4 HOH A 107 311 160 HOH HOH . 
D 4 HOH A 108 312 166 HOH HOH . 
D 4 HOH A 109 313 167 HOH HOH . 
D 4 HOH A 110 314 169 HOH HOH . 
D 4 HOH A 111 315 175 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GNP . . . C 3 -4.099 12.482 5.989 1 18.55 ? PG GNP 204 A 1 
HETATM 2 O O1G GNP . . . C 3 -4.904 11.785 7.068 1 18.51 ? O1G GNP 204 A 1 
HETATM 3 O O2G GNP . . . C 3 -4.885 12.843 4.768 1 17.16 ? O2G GNP 204 A 1 
HETATM 4 O O3G GNP . . . C 3 -2.892 11.622 5.729 1 17.87 ? O3G GNP 204 A 1 
HETATM 5 N N3B GNP . . . C 3 -3.577 13.877 6.612 1 17.31 ? N3B GNP 204 A 1 
HETATM 6 P PB GNP . . . C 3 -2.597 14.981 5.947 1 17.6 ? PB GNP 204 A 1 
HETATM 7 O O1B GNP . . . C 3 -1.16 14.657 6.091 1 16.85 ? O1B GNP 204 A 1 
HETATM 8 O O2B GNP . . . C 3 -3.093 15.248 4.582 1 17.17 ? O2B GNP 204 A 1 
HETATM 9 O O3A GNP . . . C 3 -2.787 16.288 6.802 1 17.84 ? O3A GNP 204 A 1 
HETATM 10 P PA GNP . . . C 3 -3.51 17.638 6.424 1 18.95 ? PA GNP 204 A 1 
HETATM 11 O O1A GNP . . . C 3 -2.838 18.283 5.271 1 18.78 ? O1A GNP 204 A 1 
HETATM 12 O O2A GNP . . . C 3 -4.964 17.42 6.368 1 18.16 ? O2A GNP 204 A 1 
HETATM 13 O O5' GNP . . . C 3 -3.212 18.619 7.623 1 18.68 ? O5' GNP 204 A 1 
HETATM 14 C C5' GNP . . . C 3 -3.356 18.138 8.955 1 19.59 ? C5' GNP 204 A 1 
HETATM 15 C C4' GNP . . . C 3 -3.593 19.272 9.945 1 18.97 ? C4' GNP 204 A 1 
HETATM 16 O O4' GNP . . . C 3 -2.377 20.038 10.095 1 20.32 ? O4' GNP 204 A 1 
HETATM 17 C C3' GNP . . . C 3 -4.663 20.279 9.548 1 19.86 ? C3' GNP 204 A 1 
HETATM 18 O O3' GNP . . . C 3 -5.373 20.744 10.719 1 20.74 ? O3' GNP 204 A 1 
HETATM 19 C C2' GNP . . . C 3 -3.887 21.41 8.889 1 20.44 ? C2' GNP 204 A 1 
HETATM 20 O O2' GNP . . . C 3 -4.552 22.667 8.995 1 21.28 ? O2' GNP 204 A 1 
HETATM 21 C C1' GNP . . . C 3 -2.605 21.382 9.701 1 20.66 ? C1' GNP 204 A 1 
HETATM 22 N N9 GNP . . . C 3 -1.408 21.814 9.001 1 20.09 ? N9 GNP 204 A 1 
HETATM 23 C C8 GNP . . . C 3 -0.878 21.294 7.832 1 20.15 ? C8 GNP 204 A 1 
HETATM 24 N N7 GNP . . . C 3 0.222 21.877 7.463 1 19.52 ? N7 GNP 204 A 1 
HETATM 25 C C5 GNP . . . C 3 0.451 22.838 8.444 1 19.61 ? C5 GNP 204 A 1 
HETATM 26 C C6 GNP . . . C 3 1.494 23.786 8.585 1 20.73 ? C6 GNP 204 A 1 
HETATM 27 O O6 GNP . . . C 3 2.488 23.997 7.864 1 21.47 ? O6 GNP 204 A 1 
HETATM 28 N N1 GNP . . . C 3 1.342 24.581 9.721 1 21.37 ? N1 GNP 204 A 1 
HETATM 29 C C2 GNP . . . C 3 0.314 24.456 10.618 1 20.91 ? C2 GNP 204 A 1 
HETATM 30 N N2 GNP . . . C 3 0.359 25.328 11.645 1 20.8 ? N2 GNP 204 A 1 
HETATM 31 N N3 GNP . . . C 3 -0.689 23.586 10.504 1 20.45 ? N3 GNP 204 A 1 
HETATM 32 C C4 GNP . . . C 3 -0.548 22.803 9.398 1 20.3 ? C4 GNP 204 A 1 
#
_model_server_stats.io_time_ms              55 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           307 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           32 
#