data_1Z0Z # _model_server_result.job_id VeYgv5AU_SBfSNG-YU7wVQ _model_server_result.datetime_utc '2024-11-26 16:11:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1z0z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":3076}' # _entry.id 1Z0Z # _exptl.entry_id 1Z0Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1Z0Z _cell.length_a 122.408 _cell.length_b 122.408 _cell.length_c 201.869 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1Z0Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 237 n n PA O2A NAD sing 238 n n PA O5B NAD sing 239 n n PA O3 NAD sing 240 n n O2A HOA2 NAD sing 241 n n O5B C5B NAD sing 242 n n C5B C4B NAD sing 243 n n C5B H51A NAD sing 244 n n C5B H52A NAD sing 245 n n C4B O4B NAD sing 246 n n C4B C3B NAD sing 247 n n C4B H4B NAD sing 248 n n O4B C1B NAD sing 249 n n C3B O3B NAD sing 250 n n C3B C2B NAD sing 251 n n C3B H3B NAD sing 252 n n O3B HO3A NAD sing 253 n n C2B O2B NAD sing 254 n n C2B C1B NAD sing 255 n n C2B H2B NAD sing 256 n n O2B HO2A NAD sing 257 n n C1B N9A NAD sing 258 n n C1B H1B NAD sing 259 n n N9A C8A NAD sing 260 n y N9A C4A NAD sing 261 n y C8A N7A NAD doub 262 n y C8A H8A NAD sing 263 n n N7A C5A NAD sing 264 n y C5A C6A NAD sing 265 n y C5A C4A NAD doub 266 n y C6A N6A NAD sing 267 n n C6A N1A NAD doub 268 n y N6A H61A NAD sing 269 n n N6A H62A NAD sing 270 n n N1A C2A NAD sing 271 n y C2A N3A NAD doub 272 n y C2A H2A NAD sing 273 n n N3A C4A NAD sing 274 n y O3 PN NAD sing 275 n n PN O1N NAD doub 276 n n PN O2N NAD sing 277 n n PN O5D NAD sing 278 n n O5D C5D NAD sing 279 n n C5D C4D NAD sing 280 n n C5D H51N NAD sing 281 n n C5D H52N NAD sing 282 n n C4D O4D NAD sing 283 n n C4D C3D NAD sing 284 n n C4D H4D NAD sing 285 n n O4D C1D NAD sing 286 n n C3D O3D NAD sing 287 n n C3D C2D NAD sing 288 n n C3D H3D NAD sing 289 n n O3D HO3N NAD sing 290 n n C2D O2D NAD sing 291 n n C2D C1D NAD sing 292 n n C2D H2D NAD sing 293 n n O2D HO2N NAD sing 294 n n C1D N1N NAD sing 295 n n C1D H1D NAD sing 296 n n N1N C2N NAD sing 297 n y N1N C6N NAD doub 298 n y C2N C3N NAD doub 299 n y C2N H2N NAD sing 300 n n C3N C7N NAD sing 301 n n C3N C4N NAD sing 302 n y C7N O7N NAD doub 303 n n C7N N7N NAD sing 304 n n N7N H71N NAD sing 305 n n N7N H72N NAD sing 306 n n C4N C5N NAD doub 307 n y C4N H4N NAD sing 308 n n C5N C6N NAD sing 309 n y C5N H5N NAD sing 310 n n C6N H6N NAD sing 311 n n # _atom_sites.entry_id 1Z0Z _atom_sites.fract_transf_matrix[1][1] 0.008169 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008169 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004954 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NAD A 1 3075 3075 NAD NAD . F 2 NAD B 1 3076 3076 NAD NAD . G 2 NAD C 1 3077 3077 NAD NAD . H 2 NAD D 1 3078 3078 NAD NAD . I 3 HOH A 1 3076 17 HOH HOH . I 3 HOH A 2 3077 20 HOH HOH . I 3 HOH A 3 3078 22 HOH HOH . I 3 HOH A 4 3079 26 HOH HOH . I 3 HOH A 5 3080 27 HOH HOH . I 3 HOH A 6 3081 30 HOH HOH . I 3 HOH A 7 3082 31 HOH HOH . I 3 HOH A 8 3083 37 HOH HOH . I 3 HOH A 9 3084 38 HOH HOH . I 3 HOH A 10 3085 45 HOH HOH . I 3 HOH A 11 3086 50 HOH HOH . I 3 HOH A 12 3087 52 HOH HOH . I 3 HOH A 13 3088 53 HOH HOH . I 3 HOH A 14 3089 55 HOH HOH . I 3 HOH A 15 3090 59 HOH HOH . I 3 HOH A 16 3091 64 HOH HOH . I 3 HOH A 17 3092 68 HOH HOH . I 3 HOH A 18 3093 73 HOH HOH . I 3 HOH A 19 3094 78 HOH HOH . I 3 HOH A 20 3095 83 HOH HOH . I 3 HOH A 21 3096 88 HOH HOH . I 3 HOH A 22 3097 93 HOH HOH . I 3 HOH A 23 3098 94 HOH HOH . I 3 HOH A 24 3099 96 HOH HOH . I 3 HOH A 25 3100 101 HOH HOH . I 3 HOH A 26 3101 114 HOH HOH . I 3 HOH A 27 3102 118 HOH HOH . I 3 HOH A 28 3103 119 HOH HOH . I 3 HOH A 29 3104 121 HOH HOH . I 3 HOH A 30 3105 124 HOH HOH . I 3 HOH A 31 3106 130 HOH HOH . I 3 HOH A 32 3107 132 HOH HOH . I 3 HOH A 33 3108 134 HOH HOH . J 3 HOH B 1 3077 23 HOH HOH . J 3 HOH B 2 3078 24 HOH HOH . J 3 HOH B 3 3079 25 HOH HOH . J 3 HOH B 4 3080 29 HOH HOH . J 3 HOH B 5 3081 32 HOH HOH . J 3 HOH B 6 3082 34 HOH HOH . J 3 HOH B 7 3083 36 HOH HOH . J 3 HOH B 8 3084 39 HOH HOH . J 3 HOH B 9 3085 40 HOH HOH . J 3 HOH B 10 3086 49 HOH HOH . J 3 HOH B 11 3087 62 HOH HOH . J 3 HOH B 12 3088 69 HOH HOH . J 3 HOH B 13 3089 70 HOH HOH . J 3 HOH B 14 3090 71 HOH HOH . J 3 HOH B 15 3091 74 HOH HOH . J 3 HOH B 16 3092 75 HOH HOH . J 3 HOH B 17 3093 76 HOH HOH . J 3 HOH B 18 3094 77 HOH HOH . J 3 HOH B 19 3095 81 HOH HOH . J 3 HOH B 20 3096 90 HOH HOH . J 3 HOH B 21 3097 91 HOH HOH . J 3 HOH B 22 3098 99 HOH HOH . J 3 HOH B 23 3099 100 HOH HOH . J 3 HOH B 24 3100 102 HOH HOH . J 3 HOH B 25 3101 103 HOH HOH . J 3 HOH B 26 3102 105 HOH HOH . J 3 HOH B 27 3103 107 HOH HOH . J 3 HOH B 28 3104 110 HOH HOH . J 3 HOH B 29 3105 122 HOH HOH . J 3 HOH B 30 3106 126 HOH HOH . J 3 HOH B 31 3107 128 HOH HOH . K 3 HOH C 1 3078 33 HOH HOH . K 3 HOH C 2 3079 35 HOH HOH . K 3 HOH C 3 3080 41 HOH HOH . K 3 HOH C 4 3081 43 HOH HOH . K 3 HOH C 5 3082 47 HOH HOH . K 3 HOH C 6 3083 51 HOH HOH . K 3 HOH C 7 3084 56 HOH HOH . K 3 HOH C 8 3085 57 HOH HOH . K 3 HOH C 9 3086 60 HOH HOH . K 3 HOH C 10 3087 61 HOH HOH . K 3 HOH C 11 3088 63 HOH HOH . K 3 HOH C 12 3089 65 HOH HOH . K 3 HOH C 13 3090 80 HOH HOH . K 3 HOH C 14 3091 84 HOH HOH . K 3 HOH C 15 3092 85 HOH HOH . K 3 HOH C 16 3093 92 HOH HOH . K 3 HOH C 17 3094 106 HOH HOH . K 3 HOH C 18 3095 108 HOH HOH . K 3 HOH C 19 3096 109 HOH HOH . K 3 HOH C 20 3097 111 HOH HOH . K 3 HOH C 21 3098 112 HOH HOH . K 3 HOH C 22 3099 115 HOH HOH . K 3 HOH C 23 3100 127 HOH HOH . K 3 HOH C 24 3101 131 HOH HOH . L 3 HOH D 1 3079 18 HOH HOH . L 3 HOH D 2 3080 19 HOH HOH . L 3 HOH D 3 3081 21 HOH HOH . L 3 HOH D 4 3082 28 HOH HOH . L 3 HOH D 5 3083 42 HOH HOH . L 3 HOH D 6 3084 44 HOH HOH . L 3 HOH D 7 3085 46 HOH HOH . L 3 HOH D 8 3086 48 HOH HOH . L 3 HOH D 9 3087 54 HOH HOH . L 3 HOH D 10 3088 58 HOH HOH . L 3 HOH D 11 3089 66 HOH HOH . L 3 HOH D 12 3090 67 HOH HOH . L 3 HOH D 13 3091 72 HOH HOH . L 3 HOH D 14 3092 79 HOH HOH . L 3 HOH D 15 3093 82 HOH HOH . L 3 HOH D 16 3094 86 HOH HOH . L 3 HOH D 17 3095 87 HOH HOH . L 3 HOH D 18 3096 89 HOH HOH . L 3 HOH D 19 3097 95 HOH HOH . L 3 HOH D 20 3098 97 HOH HOH . L 3 HOH D 21 3099 98 HOH HOH . L 3 HOH D 22 3100 104 HOH HOH . L 3 HOH D 23 3101 113 HOH HOH . L 3 HOH D 24 3102 116 HOH HOH . L 3 HOH D 25 3103 117 HOH HOH . L 3 HOH D 26 3104 120 HOH HOH . L 3 HOH D 27 3105 123 HOH HOH . L 3 HOH D 28 3106 125 HOH HOH . L 3 HOH D 29 3107 129 HOH HOH . L 3 HOH D 30 3108 133 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . F 2 70.57 25.576 108.182 1 80.35 ? PA NAD 3076 B 1 HETATM 2 O O1A NAD . . . F 2 69.971 26.466 109.207 1 81.29 ? O1A NAD 3076 B 1 HETATM 3 O O2A NAD . . . F 2 69.467 24.943 107.273 1 74.28 ? O2A NAD 3076 B 1 HETATM 4 O O5B NAD . . . F 2 71.593 26.664 107.559 1 79.83 ? O5B NAD 3076 B 1 HETATM 5 C C5B NAD . . . F 2 72.269 26.63 106.323 1 77.88 ? C5B NAD 3076 B 1 HETATM 6 C C4B NAD . . . F 2 72.417 28.067 105.827 1 76.41 ? C4B NAD 3076 B 1 HETATM 7 O O4B NAD . . . F 2 72.818 28.073 104.471 1 76.76 ? O4B NAD 3076 B 1 HETATM 8 C C3B NAD . . . F 2 71.097 28.805 105.852 1 75.98 ? C3B NAD 3076 B 1 HETATM 9 O O3B NAD . . . F 2 71.376 30.185 105.851 1 75.86 ? O3B NAD 3076 B 1 HETATM 10 C C2B NAD . . . F 2 70.439 28.356 104.566 1 75.85 ? C2B NAD 3076 B 1 HETATM 11 O O2B NAD . . . F 2 69.481 29.289 104.095 1 76.36 ? O2B NAD 3076 B 1 HETATM 12 C C1B NAD . . . F 2 71.662 28.23 103.644 1 75.94 ? C1B NAD 3076 B 1 HETATM 13 N N9A NAD . . . F 2 71.579 27.115 102.666 1 74.44 ? N9A NAD 3076 B 1 HETATM 14 C C8A NAD . . . F 2 70.926 25.908 102.787 1 72.81 ? C8A NAD 3076 B 1 HETATM 15 N N7A NAD . . . F 2 71.132 25.208 101.653 1 72.61 ? N7A NAD 3076 B 1 HETATM 16 C C5A NAD . . . F 2 71.902 25.936 100.797 1 73.07 ? C5A NAD 3076 B 1 HETATM 17 C C6A NAD . . . F 2 72.401 25.691 99.5 1 72.16 ? C6A NAD 3076 B 1 HETATM 18 N N6A NAD . . . F 2 72.133 24.542 98.869 1 70.57 ? N6A NAD 3076 B 1 HETATM 19 N N1A NAD . . . F 2 73.184 26.658 98.881 1 73.01 ? N1A NAD 3076 B 1 HETATM 20 C C2A NAD . . . F 2 73.457 27.857 99.542 1 74.01 ? C2A NAD 3076 B 1 HETATM 21 N N3A NAD . . . F 2 72.956 28.099 100.821 1 73.94 ? N3A NAD 3076 B 1 HETATM 22 C C4A NAD . . . F 2 72.193 27.146 101.436 1 73.8 ? C4A NAD 3076 B 1 HETATM 23 O O3 NAD . . . F 2 71.669 24.558 108.852 1 79.92 ? O3 NAD 3076 B 1 HETATM 24 P PN NAD . . . F 2 71.542 22.925 108.92 1 80.89 ? PN NAD 3076 B 1 HETATM 25 O O1N NAD . . . F 2 70.097 22.559 109.009 1 80.06 ? O1N NAD 3076 B 1 HETATM 26 O O2N NAD . . . F 2 72.526 22.416 109.93 1 80.63 ? O2N NAD 3076 B 1 HETATM 27 O O5D NAD . . . F 2 72.097 22.404 107.479 1 78.66 ? O5D NAD 3076 B 1 HETATM 28 C C5D NAD . . . F 2 71.541 22.678 106.196 1 73.49 ? C5D NAD 3076 B 1 HETATM 29 C C4D NAD . . . F 2 72.689 22.924 105.225 1 70.58 ? C4D NAD 3076 B 1 HETATM 30 O O4D NAD . . . F 2 73.509 23.965 105.729 1 69.22 ? O4D NAD 3076 B 1 HETATM 31 C C3D NAD . . . F 2 73.63 21.733 105.008 1 68.81 ? C3D NAD 3076 B 1 HETATM 32 O O3D NAD . . . F 2 73.251 20.828 104.001 1 67.2 ? O3D NAD 3076 B 1 HETATM 33 C C2D NAD . . . F 2 74.909 22.409 104.594 1 68.9 ? C2D NAD 3076 B 1 HETATM 34 O O2D NAD . . . F 2 74.952 22.434 103.182 1 67.24 ? O2D NAD 3076 B 1 HETATM 35 C C1D NAD . . . F 2 74.83 23.81 105.228 1 70.34 ? C1D NAD 3076 B 1 HETATM 36 N N1N NAD . . . F 2 75.829 23.993 106.324 1 71.55 ? N1N NAD 3076 B 1 HETATM 37 C C2N NAD . . . F 2 76.817 24.963 106.222 1 71.44 ? C2N NAD 3076 B 1 HETATM 38 C C3N NAD . . . F 2 77.772 25.141 107.253 1 70.34 ? C3N NAD 3076 B 1 HETATM 39 C C7N NAD . . . F 2 78.848 26.184 107.157 1 69.23 ? C7N NAD 3076 B 1 HETATM 40 O O7N NAD . . . F 2 79.801 26.375 108.18 1 69.27 ? O7N NAD 3076 B 1 HETATM 41 N N7N NAD . . . F 2 78.913 26.959 106.095 1 69.33 ? N7N NAD 3076 B 1 HETATM 42 C C4N NAD . . . F 2 77.718 24.33 108.392 1 70.64 ? C4N NAD 3076 B 1 HETATM 43 C C5N NAD . . . F 2 76.726 23.351 108.485 1 71.6 ? C5N NAD 3076 B 1 HETATM 44 C C6N NAD . . . F 2 75.787 23.186 107.45 1 71.92 ? C6N NAD 3076 B 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 44 #