data_1Z29 # _model_server_result.job_id 6BH9DRtxjGrL12kWNxnVcw _model_server_result.datetime_utc '2024-11-29 05:41:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1z29 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":721}' # _entry.id 1Z29 # _exptl.entry_id 1Z29 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 60.052 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.69 _cell.angle_gamma 90 _cell.entry_id 1Z29 _cell.length_a 58.398 _cell.length_b 65.399 _cell.length_c 86.517 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1Z29 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NZ LYS 106 A LYS 106 1_555 B CA CA . A CA 1010 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.281 ? metalc ? metalc2 A OH TYR 240 A TYR 240 1_555 B CA CA . A CA 1010 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.292 ? metalc ? metalc3 D O ACY . A ACY 721 1_555 B CA CA . A CA 1010 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.626 ? metalc ? metalc4 B CA CA . A CA 1010 1_555 E O HOH . A HOH 2057 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.857 ? # _chem_comp.formula 'C2 H4 O2' _chem_comp.formula_weight 60.052 _chem_comp.id ACY _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O ACY doub 45 n n C OXT ACY sing 46 n n C CH3 ACY sing 47 n n OXT HXT ACY sing 48 n n CH3 H1 ACY sing 49 n n CH3 H2 ACY sing 50 n n CH3 H3 ACY sing 51 n n # _atom_sites.entry_id 1Z29 _atom_sites.fract_transf_matrix[1][1] 0.017124 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004171 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015291 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011896 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 1010 1010 CA CA . C 3 A3P A 1 2001 2001 A3P A3P . D 4 ACY A 1 721 721 ACY ACY . E 5 HOH A 1 2002 1 HOH WAT . E 5 HOH A 2 2003 2 HOH WAT . E 5 HOH A 3 2004 3 HOH WAT . E 5 HOH A 4 2005 4 HOH WAT . E 5 HOH A 5 2006 5 HOH WAT . E 5 HOH A 6 2007 6 HOH WAT . E 5 HOH A 7 2008 7 HOH WAT . E 5 HOH A 8 2009 8 HOH WAT . E 5 HOH A 9 2010 9 HOH WAT . E 5 HOH A 10 2011 10 HOH WAT . E 5 HOH A 11 2012 11 HOH WAT . E 5 HOH A 12 2013 12 HOH WAT . E 5 HOH A 13 2014 13 HOH WAT . E 5 HOH A 14 2015 14 HOH WAT . E 5 HOH A 15 2016 15 HOH WAT . E 5 HOH A 16 2017 16 HOH WAT . E 5 HOH A 17 2018 17 HOH WAT . E 5 HOH A 18 2019 18 HOH WAT . E 5 HOH A 19 2020 19 HOH WAT . E 5 HOH A 20 2021 20 HOH WAT . E 5 HOH A 21 2022 21 HOH WAT . E 5 HOH A 22 2023 22 HOH WAT . E 5 HOH A 23 2024 23 HOH WAT . E 5 HOH A 24 2025 24 HOH WAT . E 5 HOH A 25 2026 25 HOH WAT . E 5 HOH A 26 2027 26 HOH WAT . E 5 HOH A 27 2028 27 HOH WAT . E 5 HOH A 28 2029 28 HOH WAT . E 5 HOH A 29 2030 29 HOH WAT . E 5 HOH A 30 2031 30 HOH WAT . E 5 HOH A 31 2032 31 HOH WAT . E 5 HOH A 32 2033 32 HOH WAT . E 5 HOH A 33 2034 33 HOH WAT . E 5 HOH A 34 2035 34 HOH WAT . E 5 HOH A 35 2036 35 HOH WAT . E 5 HOH A 36 2037 36 HOH WAT . E 5 HOH A 37 2038 37 HOH WAT . E 5 HOH A 38 2039 38 HOH WAT . E 5 HOH A 39 2040 39 HOH WAT . E 5 HOH A 40 2041 40 HOH WAT . E 5 HOH A 41 2042 41 HOH WAT . E 5 HOH A 42 2043 42 HOH WAT . E 5 HOH A 43 2044 43 HOH WAT . E 5 HOH A 44 2045 44 HOH WAT . E 5 HOH A 45 2046 46 HOH WAT . E 5 HOH A 46 2047 47 HOH WAT . E 5 HOH A 47 2048 48 HOH WAT . E 5 HOH A 48 2049 49 HOH WAT . E 5 HOH A 49 2050 50 HOH WAT . E 5 HOH A 50 2051 51 HOH WAT . E 5 HOH A 51 2052 52 HOH WAT . E 5 HOH A 52 2053 53 HOH WAT . E 5 HOH A 53 2054 54 HOH WAT . E 5 HOH A 54 2055 55 HOH WAT . E 5 HOH A 55 2056 56 HOH WAT . E 5 HOH A 56 2057 57 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C ACY . . . D 4 -0.805 7.249 25.649 1 37.16 ? C ACY 721 A 1 HETATM 2 O O ACY . . . D 4 -0.161 6.786 24.601 1 38.46 ? O ACY 721 A 1 HETATM 3 O OXT ACY . . . D 4 -1.154 8.42 25.755 1 37.88 ? OXT ACY 721 A 1 HETATM 4 C CH3 ACY . . . D 4 -1.099 6.243 26.737 1 34.66 ? CH3 ACY 721 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 246 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #