data_1Z2B # _model_server_result.job_id OUmH8uVPit2GgauMK3AGYg _model_server_result.datetime_utc '2024-11-17 00:34:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1z2b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":701}' # _entry.id 1Z2B # _exptl.entry_id 1Z2B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 431.502 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-MERCAPTO-N-[1,2,3,10-TETRAMETHOXY-9-OXO-5,6,7,9-TETRAHYDRO-BENZO[A]HEPTALEN-7-YL]ACETAMIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1Z2B _cell.length_a 324.852 _cell.length_b 324.852 _cell.length_c 54.208 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1Z2B _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 I N N ? 7 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A N GLY 144 A GLY 144 1_555 F MG MG . A MG 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.993 ? metalc ? metalc2 F MG MG . A MG 500 1_555 G O2G GTP . A GTP 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.67 ? metalc ? metalc3 F MG MG . A MG 500 1_555 G O3G GTP . A GTP 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.709 ? metalc ? metalc4 F MG MG . A MG 500 1_555 G O2B GTP . A GTP 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc5 C N GLY 144 C GLY 144 1_555 J MG MG . C MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.096 ? metalc ? metalc6 J MG MG . C MG 501 1_555 K O2B GTP . C GTP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.774 ? metalc ? metalc7 J MG MG . C MG 501 1_555 K O3G GTP . C GTP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.661 ? metalc ? metalc8 J MG MG . C MG 501 1_555 K O2G GTP . C GTP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.928 ? # _chem_comp.formula 'C22 H25 N O6 S' _chem_comp.formula_weight 431.502 _chem_comp.id CN2 _chem_comp.mon_nstd_flag . _chem_comp.name 2-MERCAPTO-N-[1,2,3,10-TETRAMETHOXY-9-OXO-5,6,7,9-TETRAHYDRO-BENZO[A]HEPTALEN-7-YL]ACETAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O4 C12 CN2 doub 70 n n C12 C13 CN2 sing 71 n n C12 N1 CN2 sing 72 n n C13 S1 CN2 sing 73 n n C13 H131 CN2 sing 74 n n C13 H132 CN2 sing 75 n n S1 HS1 CN2 sing 76 n n N1 C11 CN2 sing 77 n n N1 HN1 CN2 sing 78 n n C11 C14 CN2 sing 79 n n C11 C10 CN2 sing 80 n n C11 H11 CN2 sing 81 n n C14 C15 CN2 doub 82 n y C14 C21 CN2 sing 83 n y C15 C16 CN2 sing 84 n y C15 H15 CN2 sing 85 n n C10 C9 CN2 sing 86 n n C10 H101 CN2 sing 87 n n C10 H102 CN2 sing 88 n n C9 C8 CN2 sing 89 n n C9 H91 CN2 sing 90 n n C9 H92 CN2 sing 91 n n C8 C7 CN2 sing 92 n y C8 C22 CN2 doub 93 n y C7 C5 CN2 doub 94 n y C7 H7 CN2 sing 95 n n C5 C3 CN2 sing 96 n y C5 O3 CN2 sing 97 n n C3 C1 CN2 doub 98 n y C3 O2 CN2 sing 99 n n C1 O1 CN2 sing 100 n n C1 C22 CN2 sing 101 n y O1 C2 CN2 sing 102 n n C2 H21 CN2 sing 103 n n C2 H22 CN2 sing 104 n n C2 H23 CN2 sing 105 n n O2 C4 CN2 sing 106 n n C4 H41 CN2 sing 107 n n C4 H42 CN2 sing 108 n n C4 H43 CN2 sing 109 n n O3 C6 CN2 sing 110 n n C6 H61 CN2 sing 111 n n C6 H62 CN2 sing 112 n n C6 H63 CN2 sing 113 n n C22 C21 CN2 sing 114 n y C21 C20 CN2 doub 115 n y C20 C19 CN2 sing 116 n y C20 H20 CN2 sing 117 n n C19 C17 CN2 doub 118 n y C19 H19 CN2 sing 119 n n C17 C16 CN2 sing 120 n y C17 O6 CN2 sing 121 n n C16 O5 CN2 doub 122 n n O6 C18 CN2 sing 123 n n C18 H181 CN2 sing 124 n n C18 H182 CN2 sing 125 n n C18 H183 CN2 sing 126 n n # _atom_sites.entry_id 1Z2B _atom_sites.fract_transf_matrix[1][1] 0.003078 _atom_sites.fract_transf_matrix[1][2] 0.001777 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003555 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018447 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 4 MG A 1 500 500 MG MG . G 5 GTP A 1 600 600 GTP GTP . H 6 GDP B 1 602 602 GDP GDP . I 7 CN2 B 1 700 700 CN2 CN2 . J 4 MG C 1 501 501 MG MG . K 5 GTP C 1 601 601 GTP GTP . L 8 VLB C 1 800 800 VLB VLB . M 6 GDP D 1 603 603 GDP GDP . N 7 CN2 D 1 701 701 CN2 CN2 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O4 CN2 . . . N 7 43.215 53.978 -11.384 1 117.78 ? O4 CN2 701 D 1 HETATM 2 C C12 CN2 . . . N 7 43.76 54.009 -10.278 1 117.78 ? C12 CN2 701 D 1 HETATM 3 C C13 CN2 . . . N 7 45.194 54.427 -10.148 1 117.78 ? C13 CN2 701 D 1 HETATM 4 S S1 CN2 . . . N 7 46.151 53.081 -10.874 1 117.78 ? S1 CN2 701 D 1 HETATM 5 N N1 CN2 . . . N 7 43.244 53.695 -9.086 1 117.78 ? N1 CN2 701 D 1 HETATM 6 C C11 CN2 . . . N 7 41.889 53.263 -8.851 1 117.78 ? C11 CN2 701 D 1 HETATM 7 C C14 CN2 . . . N 7 40.902 54.271 -9.365 1 117.78 ? C14 CN2 701 D 1 HETATM 8 C C15 CN2 . . . N 7 41.313 55.582 -9.68 1 117.78 ? C15 CN2 701 D 1 HETATM 9 C C10 CN2 . . . N 7 41.829 53.176 -7.324 1 117.78 ? C10 CN2 701 D 1 HETATM 10 C C9 CN2 . . . N 7 40.442 52.884 -6.74 1 117.78 ? C9 CN2 701 D 1 HETATM 11 C C8 CN2 . . . N 7 39.64 51.985 -7.64 1 117.78 ? C8 CN2 701 D 1 HETATM 12 C C7 CN2 . . . N 7 39.264 50.745 -7.206 1 117.78 ? C7 CN2 701 D 1 HETATM 13 C C5 CN2 . . . N 7 38.523 49.913 -8.038 1 117.78 ? C5 CN2 701 D 1 HETATM 14 C C3 CN2 . . . N 7 38.11 50.303 -9.342 1 117.78 ? C3 CN2 701 D 1 HETATM 15 C C1 CN2 . . . N 7 38.501 51.564 -9.795 1 117.78 ? C1 CN2 701 D 1 HETATM 16 O O1 CN2 . . . N 7 38.133 51.975 -11.041 1 117.78 ? O1 CN2 701 D 1 HETATM 17 C C2 CN2 . . . N 7 39.016 51.689 -12.119 1 117.78 ? C2 CN2 701 D 1 HETATM 18 O O2 CN2 . . . N 7 37.351 49.467 -10.198 1 117.78 ? O2 CN2 701 D 1 HETATM 19 C C4 CN2 . . . N 7 35.914 49.435 -10.327 1 117.78 ? C4 CN2 701 D 1 HETATM 20 O O3 CN2 . . . N 7 38.206 48.685 -7.494 1 117.78 ? O3 CN2 701 D 1 HETATM 21 C C6 CN2 . . . N 7 36.855 48.342 -7.14 1 117.78 ? C6 CN2 701 D 1 HETATM 22 C C22 CN2 . . . N 7 39.248 52.413 -8.996 1 117.78 ? C22 CN2 701 D 1 HETATM 23 C C21 CN2 . . . N 7 39.648 53.789 -9.446 1 117.78 ? C21 CN2 701 D 1 HETATM 24 C C20 CN2 . . . N 7 38.844 54.644 -9.844 1 117.78 ? C20 CN2 701 D 1 HETATM 25 C C19 CN2 . . . N 7 38.665 55.768 -10.243 1 117.78 ? C19 CN2 701 D 1 HETATM 26 C C17 CN2 . . . N 7 39.167 56.888 -10.419 1 117.78 ? C17 CN2 701 D 1 HETATM 27 C C16 CN2 . . . N 7 40.631 56.847 -10.211 1 117.78 ? C16 CN2 701 D 1 HETATM 28 O O5 CN2 . . . N 7 41.294 57.851 -10.493 1 117.78 ? O5 CN2 701 D 1 HETATM 29 O O6 CN2 . . . N 7 38.393 58.039 -10.818 1 117.78 ? O6 CN2 701 D 1 HETATM 30 C C18 CN2 . . . N 7 38.137 58.157 -12.215 1 117.78 ? C18 CN2 701 D 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 30 #