data_1Z2B
#
_model_server_result.job_id            htIpXKegtsHOhyrgw67q8A 
_model_server_result.datetime_utc      '2024-11-17 00:54:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1z2b 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":800}' 
#
_entry.id    1Z2B 
#
_exptl.entry_id    1Z2B 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              810.974 
_entity.id                          8 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "(2ALPHA,2'BETA,3BETA,4ALPHA,5BETA)-VINCALEUKOBLASTINE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1Z2B 
_cell.length_a            324.852 
_cell.length_b            324.852 
_cell.length_c            54.208 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1Z2B 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        170 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      8 
_struct_asym.id                             L 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A N GLY 144 A GLY 144 1_555 F MG MG . A MG 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.993 ? 
metalc ? metalc2 F MG MG . A MG 500 1_555 G O2G GTP . A GTP 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.67 ? 
metalc ? metalc3 F MG MG . A MG 500 1_555 G O3G GTP . A GTP 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.709 ? 
metalc ? metalc4 F MG MG . A MG 500 1_555 G O2B GTP . A GTP 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? 
metalc ? metalc5 C N GLY 144 C GLY 144 1_555 J MG MG . C MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.096 ? 
metalc ? metalc6 J MG MG . C MG 501 1_555 K O2B GTP . C GTP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.774 ? 
metalc ? metalc7 J MG MG . C MG 501 1_555 K O3G GTP . C GTP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.661 ? 
metalc ? metalc8 J MG MG . C MG 501 1_555 K O2G GTP . C GTP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.928 ? 
#
_chem_comp.formula           'C46 H58 N4 O9' 
_chem_comp.formula_weight    810.974 
_chem_comp.id                VLB 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "(2ALPHA,2'BETA,3BETA,4ALPHA,5BETA)-VINCALEUKOBLASTINE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     VINBLASTINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C71 C70 VLB sing 526 n n 
C71 H711 VLB sing 527 n n 
C71 H712 VLB sing 528 n n 
C71 H713 VLB sing 529 n n 
C70 C54 VLB sing 530 n n 
C70 H701 VLB sing 531 n n 
C70 H702 VLB sing 532 n n 
C54 O72 VLB sing 533 n n 
C54 C55 VLB sing 534 n n 
C54 C53 VLB sing 535 n n 
O72 H72 VLB sing 536 n n 
C55 N56 VLB sing 537 n n 
C55 H551 VLB sing 538 n n 
C55 H552 VLB sing 539 n n 
C53 C52 VLB sing 540 n n 
C53 H531 VLB sing 541 n n 
C53 H532 VLB sing 542 n n 
C52 C51 VLB sing 543 n n 
C52 C69 VLB sing 544 n n 
C52 H52 VLB sing 545 n n 
C51 C68 VLB sing 546 n n 
C51 H511 VLB sing 547 n n 
C51 H512 VLB sing 548 n n 
C69 N56 VLB sing 549 n n 
C69 H691 VLB sing 550 n n 
C69 H692 VLB sing 551 n n 
N56 C57 VLB sing 552 n n 
C57 C58 VLB sing 553 n n 
C57 H571 VLB sing 554 n n 
C57 H572 VLB sing 555 n n 
C58 C59 VLB sing 556 n n 
C58 H581 VLB sing 557 n n 
C58 H582 VLB sing 558 n n 
C59 C60 VLB sing 559 n y 
C59 C67 VLB doub 560 n y 
C60 C61 VLB doub 561 n y 
C60 C65 VLB sing 562 n y 
C61 C62 VLB sing 563 n y 
C61 H61 VLB sing 564 n n 
C62 C63 VLB doub 565 n y 
C62 H62 VLB sing 566 n n 
C63 C64 VLB sing 567 n y 
C63 H63 VLB sing 568 n n 
C64 C65 VLB doub 569 n y 
C64 H64 VLB sing 570 n n 
C65 N66 VLB sing 571 n y 
N66 C67 VLB sing 572 n y 
N66 H66 VLB sing 573 n n 
C67 C68 VLB sing 574 n n 
C68 C73 VLB sing 575 n n 
C68 C15 VLB sing 576 n n 
C73 O74 VLB doub 577 n n 
C73 O75 VLB sing 578 n n 
O75 C76 VLB sing 579 n n 
C76 H761 VLB sing 580 n n 
C76 H762 VLB sing 581 n n 
C76 H763 VLB sing 582 n n 
C15 C14 VLB doub 583 n y 
C15 C16 VLB sing 584 n y 
C14 C13 VLB sing 585 n y 
C14 H14 VLB sing 586 n n 
C13 C12 VLB sing 587 n n 
C13 C18 VLB doub 588 n y 
C12 C19 VLB sing 589 n n 
C12 C11 VLB sing 590 n n 
C12 C2 VLB sing 591 n n 
C19 N9 VLB sing 592 n n 
C19 C5 VLB sing 593 n n 
C19 H19 VLB sing 594 n n 
C11 C10 VLB sing 595 n n 
C11 H111 VLB sing 596 n n 
C11 H112 VLB sing 597 n n 
C10 N9 VLB sing 598 n n 
C10 H101 VLB sing 599 n n 
C10 H102 VLB sing 600 n n 
N9 C8 VLB sing 601 n n 
C8 C7 VLB sing 602 n n 
C8 H81 VLB sing 603 n n 
C8 H82 VLB sing 604 n n 
C7 C6 VLB doub 605 n n 
C7 H7 VLB sing 606 n n 
C6 C5 VLB sing 607 n n 
C6 H6 VLB sing 608 n n 
C5 C20 VLB sing 609 n n 
C5 C4 VLB sing 610 n n 
C20 C21 VLB sing 611 n n 
C20 H201 VLB sing 612 n n 
C20 H202 VLB sing 613 n n 
C21 H211 VLB sing 614 n n 
C21 H212 VLB sing 615 n n 
C21 H213 VLB sing 616 n n 
C4 O28 VLB sing 617 n n 
C4 C3 VLB sing 618 n n 
C4 H4 VLB sing 619 n n 
O28 C29 VLB sing 620 n n 
C29 C30 VLB sing 621 n n 
C29 O31 VLB doub 622 n n 
C30 H301 VLB sing 623 n n 
C30 H302 VLB sing 624 n n 
C30 H303 VLB sing 625 n n 
C3 C23 VLB sing 626 n n 
C3 O27 VLB sing 627 n n 
C3 C2 VLB sing 628 n n 
C23 O24 VLB doub 629 n n 
C23 O25 VLB sing 630 n n 
O25 C26 VLB sing 631 n n 
C26 H261 VLB sing 632 n n 
C26 H262 VLB sing 633 n n 
C26 H263 VLB sing 634 n n 
O27 H27 VLB sing 635 n n 
C2 N1 VLB sing 636 n n 
C2 H2 VLB sing 637 n n 
N1 C22 VLB sing 638 n n 
N1 C18 VLB sing 639 n n 
C22 H221 VLB sing 640 n n 
C22 H222 VLB sing 641 n n 
C22 H223 VLB sing 642 n n 
C18 C17 VLB sing 643 n y 
C17 C16 VLB doub 644 n y 
C17 H17 VLB sing 645 n n 
C16 O32 VLB sing 646 n n 
O32 C33 VLB sing 647 n n 
C33 H331 VLB sing 648 n n 
C33 H332 VLB sing 649 n n 
C33 H333 VLB sing 650 n n 
#
_atom_sites.entry_id                     1Z2B 
_atom_sites.fract_transf_matrix[1][1]    0.003078 
_atom_sites.fract_transf_matrix[1][2]    0.001777 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.003555 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.018447 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 4 MG A 1 500 500 MG MG . 
G 5 GTP A 1 600 600 GTP GTP . 
H 6 GDP B 1 602 602 GDP GDP . 
I 7 CN2 B 1 700 700 CN2 CN2 . 
J 4 MG C 1 501 501 MG MG . 
K 5 GTP C 1 601 601 GTP GTP . 
L 8 VLB C 1 800 800 VLB VLB . 
M 6 GDP D 1 603 603 GDP GDP . 
N 7 CN2 D 1 701 701 CN2 CN2 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C71 VLB . . . L 8 94.535 70.52 -8.199 1 117.78 ? C71 VLB 800 C 1 
HETATM 2 C C70 VLB . . . L 8 93.184 70.064 -7.662 1 117.78 ? C70 VLB 800 C 1 
HETATM 3 C C54 VLB . . . L 8 92.186 69.7 -8.754 1 117.78 ? C54 VLB 800 C 1 
HETATM 4 O O72 VLB . . . L 8 92.697 68.556 -9.419 1 117.78 ? O72 VLB 800 C 1 
HETATM 5 C C55 VLB . . . L 8 90.81 69.444 -8.087 1 117.78 ? C55 VLB 800 C 1 
HETATM 6 C C53 VLB . . . L 8 92.049 70.81 -9.786 1 117.78 ? C53 VLB 800 C 1 
HETATM 7 C C52 VLB . . . L 8 90.913 70.533 -10.756 1 117.78 ? C52 VLB 800 C 1 
HETATM 8 C C51 VLB . . . L 8 91.391 69.521 -11.812 1 117.78 ? C51 VLB 800 C 1 
HETATM 9 C C69 VLB . . . L 8 89.638 70.193 -9.977 1 117.78 ? C69 VLB 800 C 1 
HETATM 10 N N56 VLB . . . L 8 89.818 69.045 -9.089 1 117.78 ? N56 VLB 800 C 1 
HETATM 11 C C57 VLB . . . L 8 90.339 67.76 -9.597 1 117.78 ? C57 VLB 800 C 1 
HETATM 12 C C58 VLB . . . L 8 89.565 66.959 -10.622 1 117.78 ? C58 VLB 800 C 1 
HETATM 13 C C59 VLB . . . L 8 88.949 67.468 -11.911 1 117.78 ? C59 VLB 800 C 1 
HETATM 14 C C60 VLB . . . L 8 87.74 66.93 -12.282 1 117.78 ? C60 VLB 800 C 1 
HETATM 15 C C61 VLB . . . L 8 86.945 65.969 -11.674 1 117.78 ? C61 VLB 800 C 1 
HETATM 16 C C62 VLB . . . L 8 85.747 65.606 -12.261 1 117.78 ? C62 VLB 800 C 1 
HETATM 17 C C63 VLB . . . L 8 85.375 66.202 -13.456 1 117.78 ? C63 VLB 800 C 1 
HETATM 18 C C64 VLB . . . L 8 86.173 67.166 -14.063 1 117.78 ? C64 VLB 800 C 1 
HETATM 19 C C65 VLB . . . L 8 87.358 67.525 -13.465 1 117.78 ? C65 VLB 800 C 1 
HETATM 20 N N66 VLB . . . L 8 88.29 68.381 -13.812 1 117.78 ? N66 VLB 800 C 1 
HETATM 21 C C67 VLB . . . L 8 89.273 68.41 -12.9 1 117.78 ? C67 VLB 800 C 1 
HETATM 22 C C68 VLB . . . L 8 90.501 69.311 -13.047 1 117.78 ? C68 VLB 800 C 1 
HETATM 23 C C73 VLB . . . L 8 91.189 68.551 -14.168 1 117.78 ? C73 VLB 800 C 1 
HETATM 24 O O74 VLB . . . L 8 90.707 68.584 -15.307 1 117.78 ? O74 VLB 800 C 1 
HETATM 25 O O75 VLB . . . L 8 92.302 67.813 -13.893 1 117.78 ? O75 VLB 800 C 1 
HETATM 26 C C76 VLB . . . L 8 92.698 67.067 -15.061 1 117.78 ? C76 VLB 800 C 1 
HETATM 27 C C15 VLB . . . L 8 90.151 70.741 -13.57 1 117.78 ? C15 VLB 800 C 1 
HETATM 28 C C14 VLB . . . L 8 88.95 71.323 -13.183 1 117.78 ? C14 VLB 800 C 1 
HETATM 29 C C13 VLB . . . L 8 88.597 72.593 -13.6 1 117.78 ? C13 VLB 800 C 1 
HETATM 30 C C12 VLB . . . L 8 87.371 73.428 -13.344 1 117.78 ? C12 VLB 800 C 1 
HETATM 31 C C19 VLB . . . L 8 86.223 72.772 -14.122 1 117.78 ? C19 VLB 800 C 1 
HETATM 32 C C11 VLB . . . L 8 86.934 73.387 -11.872 1 117.78 ? C11 VLB 800 C 1 
HETATM 33 C C10 VLB . . . L 8 85.557 72.728 -11.939 1 117.78 ? C10 VLB 800 C 1 
HETATM 34 N N9 VLB . . . L 8 85.083 73.092 -13.274 1 117.78 ? N9 VLB 800 C 1 
HETATM 35 C C8 VLB . . . L 8 83.993 72.245 -13.705 1 117.78 ? C8 VLB 800 C 1 
HETATM 36 C C7 VLB . . . L 8 83.655 72.724 -14.952 1 117.78 ? C7 VLB 800 C 1 
HETATM 37 C C6 VLB . . . L 8 84.62 73.231 -15.825 1 117.78 ? C6 VLB 800 C 1 
HETATM 38 C C5 VLB . . . L 8 85.984 73.305 -15.544 1 117.78 ? C5 VLB 800 C 1 
HETATM 39 C C20 VLB . . . L 8 86.75 72.458 -16.553 1 117.78 ? C20 VLB 800 C 1 
HETATM 40 C C21 VLB . . . L 8 85.923 71.271 -17.019 1 117.78 ? C21 VLB 800 C 1 
HETATM 41 C C4 VLB . . . L 8 86.478 74.756 -15.774 1 117.78 ? C4 VLB 800 C 1 
HETATM 42 O O28 VLB . . . L 8 85.591 75.447 -16.594 1 117.78 ? O28 VLB 800 C 1 
HETATM 43 C C29 VLB . . . L 8 86.184 75.38 -17.801 1 117.78 ? C29 VLB 800 C 1 
HETATM 44 C C30 VLB . . . L 8 85.401 75.382 -18.954 1 117.78 ? C30 VLB 800 C 1 
HETATM 45 O O31 VLB . . . L 8 87.412 75.3 -17.846 1 117.78 ? O31 VLB 800 C 1 
HETATM 46 C C3 VLB . . . L 8 86.691 75.594 -14.527 1 117.78 ? C3 VLB 800 C 1 
HETATM 47 C C23 VLB . . . L 8 87.035 77.13 -14.767 1 117.78 ? C23 VLB 800 C 1 
HETATM 48 O O24 VLB . . . L 8 87.329 77.876 -13.817 1 117.78 ? O24 VLB 800 C 1 
HETATM 49 O O25 VLB . . . L 8 87.009 77.707 -16.021 1 117.78 ? O25 VLB 800 C 1 
HETATM 50 C C26 VLB . . . L 8 87.648 79.023 -16.092 1 117.78 ? C26 VLB 800 C 1 
HETATM 51 O O27 VLB . . . L 8 85.479 75.531 -13.78 1 117.78 ? O27 VLB 800 C 1 
HETATM 52 C C2 VLB . . . L 8 87.809 74.815 -13.793 1 117.78 ? C2 VLB 800 C 1 
HETATM 53 N N1 VLB . . . L 8 88.919 74.503 -14.72 1 117.78 ? N1 VLB 800 C 1 
HETATM 54 C C22 VLB . . . L 8 89.996 75.444 -14.417 1 117.78 ? C22 VLB 800 C 1 
HETATM 55 C C18 VLB . . . L 8 89.437 73.312 -14.43 1 117.78 ? C18 VLB 800 C 1 
HETATM 56 C C17 VLB . . . L 8 90.64 72.749 -14.821 1 117.78 ? C17 VLB 800 C 1 
HETATM 57 C C16 VLB . . . L 8 91.004 71.483 -14.398 1 117.78 ? C16 VLB 800 C 1 
HETATM 58 O O32 VLB . . . L 8 92.19 70.981 -14.811 1 117.78 ? O32 VLB 800 C 1 
HETATM 59 C C33 VLB . . . L 8 92.797 71.755 -15.842 1 117.78 ? C33 VLB 800 C 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           29 
_model_server_stats.create_model_time_ms    28 
_model_server_stats.query_time_ms           331 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           59 
#