data_1Z2C # _model_server_result.job_id GA35uhAeENXSmjp5nZBkig _model_server_result.datetime_utc '2024-11-01 14:31:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1z2c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":195}' # _entry.id 1Z2C # _exptl.entry_id 1Z2C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 522.196 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1Z2C _cell.length_a 148.64 _cell.length_b 85.35 _cell.length_c 123.38 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1Z2C _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? tetrameric 4 author_defined_assembly 1 ? tetrameric 4 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G 1 1,2 C,D,H,I 2 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_575 -x,-y+2,z -1 0 0 0 -1 0 0 0 1 0 170.7 0 3 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 85.35 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 19 A THR 19 1_555 E MG MG . A MG 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.955 ? metalc ? metalc2 A OG1 THR 37 A THR 37 1_555 E MG MG . A MG 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? metalc ? metalc3 E MG MG . A MG 194 1_555 F N3B GNP . A GNP 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.045 ? metalc ? metalc4 E MG MG . A MG 194 1_555 F O2B GNP . A GNP 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc5 E MG MG . A MG 194 1_555 F O2G GNP . A GNP 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc6 C OG1 THR 19 C THR 19 1_555 H MG MG . C MG 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.843 ? metalc ? metalc7 C OG1 THR 37 C THR 37 1_555 H MG MG . C MG 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? metalc ? metalc8 H MG MG . C MG 194 1_555 I N3B GNP . C GNP 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.128 ? metalc ? metalc9 H MG MG . C MG 194 1_555 I O2B GNP . C GNP 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc10 H MG MG . C MG 194 1_555 I O2G GNP . C GNP 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.817 ? # _chem_comp.formula 'C10 H17 N6 O13 P3' _chem_comp.formula_weight 522.196 _chem_comp.id GNP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GNP doub 129 n n PG O2G GNP sing 130 n n PG O3G GNP sing 131 n n PG N3B GNP sing 132 n n O2G HOG2 GNP sing 133 n n O3G HOG3 GNP sing 134 n n N3B PB GNP sing 135 n n N3B HNB3 GNP sing 136 n n PB O1B GNP doub 137 n n PB O2B GNP sing 138 n n PB O3A GNP sing 139 n n O2B HOB2 GNP sing 140 n n O3A PA GNP sing 141 n n PA O1A GNP doub 142 n n PA O2A GNP sing 143 n n PA O5' GNP sing 144 n n O2A HOA2 GNP sing 145 n n O5' C5' GNP sing 146 n n C5' C4' GNP sing 147 n n C5' "H5'2" GNP sing 148 n n C5' "H5'1" GNP sing 149 n n C4' O4' GNP sing 150 n n C4' C3' GNP sing 151 n n C4' H4' GNP sing 152 n n O4' C1' GNP sing 153 n n C3' O3' GNP sing 154 n n C3' C2' GNP sing 155 n n C3' H3' GNP sing 156 n n O3' HO3' GNP sing 157 n n C2' O2' GNP sing 158 n n C2' C1' GNP sing 159 n n C2' H2' GNP sing 160 n n O2' HO2' GNP sing 161 n n C1' N9 GNP sing 162 n n C1' H1' GNP sing 163 n n N9 C8 GNP sing 164 n y N9 C4 GNP sing 165 n y C8 N7 GNP doub 166 n y C8 H8 GNP sing 167 n n N7 C5 GNP sing 168 n y C5 C6 GNP sing 169 n y C5 C4 GNP doub 170 n y C6 O6 GNP doub 171 n n C6 N1 GNP sing 172 n y N1 C2 GNP sing 173 n y N1 HN1 GNP sing 174 n n C2 N2 GNP sing 175 n n C2 N3 GNP doub 176 n y N2 HN21 GNP sing 177 n n N2 HN22 GNP sing 178 n n N3 C4 GNP sing 179 n y # _atom_sites.entry_id 1Z2C _atom_sites.fract_transf_matrix[1][1] 0.006728 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011716 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008105 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 MG A 1 194 2 MG MG . F 4 GNP A 1 195 1 GNP GNP . G 3 MG B 1 5 5 MG MG . H 3 MG C 1 194 4 MG MG . I 4 GNP C 1 195 3 GNP GNP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GNP . . . F 4 26.55 79.761 91.439 1 45.43 ? PG GNP 195 A 1 HETATM 2 O O1G GNP . . . F 4 27.762 80.332 92.151 1 43.46 ? O1G GNP 195 A 1 HETATM 3 O O2G GNP . . . F 4 26.72 79.259 90.017 1 44.4 ? O2G GNP 195 A 1 HETATM 4 O O3G GNP . . . F 4 25.538 80.865 91.627 1 42.95 ? O3G GNP 195 A 1 HETATM 5 N N3B GNP . . . F 4 26.015 78.462 92.239 1 46.64 ? N3B GNP 195 A 1 HETATM 6 P PB GNP . . . F 4 24.781 77.519 91.815 1 46.14 ? PB GNP 195 A 1 HETATM 7 O O1B GNP . . . F 4 23.547 78.316 91.725 1 46.97 ? O1B GNP 195 A 1 HETATM 8 O O2B GNP . . . F 4 25.195 76.855 90.56 1 46.15 ? O2B GNP 195 A 1 HETATM 9 O O3A GNP . . . F 4 24.46 76.499 92.929 1 49.58 ? O3A GNP 195 A 1 HETATM 10 P PA GNP . . . F 4 25.213 75.173 93.19 1 54.29 ? PA GNP 195 A 1 HETATM 11 O O1A GNP . . . F 4 24.508 74.049 92.519 1 52.84 ? O1A GNP 195 A 1 HETATM 12 O O2A GNP . . . F 4 26.656 75.362 92.84 1 53.29 ? O2A GNP 195 A 1 HETATM 13 O O5' GNP . . . F 4 25.164 74.81 94.734 1 53.12 ? O5' GNP 195 A 1 HETATM 14 C C5' GNP . . . F 4 24.183 75.299 95.621 1 54.08 ? C5' GNP 195 A 1 HETATM 15 C C4' GNP . . . F 4 24.491 74.918 97.068 1 55.05 ? C4' GNP 195 A 1 HETATM 16 O O4' GNP . . . F 4 23.295 74.376 97.678 1 54.87 ? O4' GNP 195 A 1 HETATM 17 C C3' GNP . . . F 4 25.548 73.842 97.331 1 56.33 ? C3' GNP 195 A 1 HETATM 18 O O3' GNP . . . F 4 26.075 73.883 98.667 1 57.21 ? O3' GNP 195 A 1 HETATM 19 C C2' GNP . . . F 4 24.738 72.568 97.134 1 56.42 ? C2' GNP 195 A 1 HETATM 20 O O2' GNP . . . F 4 25.294 71.426 97.773 1 57.09 ? O2' GNP 195 A 1 HETATM 21 C C1' GNP . . . F 4 23.376 72.961 97.709 1 56.01 ? C1' GNP 195 A 1 HETATM 22 N N9 GNP . . . F 4 22.296 72.367 96.915 1 56.32 ? N9 GNP 195 A 1 HETATM 23 C C8 GNP . . . F 4 22.268 72.265 95.538 1 55.88 ? C8 GNP 195 A 1 HETATM 24 N N7 GNP . . . F 4 21.2 71.673 95.086 1 55.97 ? N7 GNP 195 A 1 HETATM 25 C C5 GNP . . . F 4 20.467 71.367 96.232 1 55.93 ? C5 GNP 195 A 1 HETATM 26 C C6 GNP . . . F 4 19.205 70.725 96.356 1 56.65 ? C6 GNP 195 A 1 HETATM 27 O O6 GNP . . . F 4 18.474 70.284 95.445 1 56.3 ? O6 GNP 195 A 1 HETATM 28 N N1 GNP . . . F 4 18.811 70.621 97.692 1 56.36 ? N1 GNP 195 A 1 HETATM 29 C C2 GNP . . . F 4 19.545 71.064 98.767 1 55.78 ? C2 GNP 195 A 1 HETATM 30 N N2 GNP . . . F 4 18.992 70.854 99.974 1 56.11 ? N2 GNP 195 A 1 HETATM 31 N N3 GNP . . . F 4 20.725 71.663 98.659 1 54.62 ? N3 GNP 195 A 1 HETATM 32 C C4 GNP . . . F 4 21.124 71.783 97.371 1 55.12 ? C4 GNP 195 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 32 #