data_1Z2C # _model_server_result.job_id hXQZOgnHVw3T-pVi6UO6oQ _model_server_result.datetime_utc '2024-11-22 20:09:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1z2c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":195}' # _entry.id 1Z2C # _exptl.entry_id 1Z2C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 522.196 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1Z2C _cell.length_a 148.64 _cell.length_b 85.35 _cell.length_c 123.38 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1Z2C _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? tetrameric 4 author_defined_assembly 1 ? tetrameric 4 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G 1 1,2 C,D,H,I 2 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_575 -x,-y+2,z -1 0 0 0 -1 0 0 0 1 0 170.7 0 3 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 85.35 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 19 A THR 19 1_555 E MG MG . A MG 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.955 ? metalc ? metalc2 A OG1 THR 37 A THR 37 1_555 E MG MG . A MG 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? metalc ? metalc3 E MG MG . A MG 194 1_555 F N3B GNP . A GNP 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.045 ? metalc ? metalc4 E MG MG . A MG 194 1_555 F O2B GNP . A GNP 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc5 E MG MG . A MG 194 1_555 F O2G GNP . A GNP 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc6 C OG1 THR 19 C THR 19 1_555 H MG MG . C MG 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.843 ? metalc ? metalc7 C OG1 THR 37 C THR 37 1_555 H MG MG . C MG 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? metalc ? metalc8 H MG MG . C MG 194 1_555 I N3B GNP . C GNP 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.128 ? metalc ? metalc9 H MG MG . C MG 194 1_555 I O2B GNP . C GNP 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc10 H MG MG . C MG 194 1_555 I O2G GNP . C GNP 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.817 ? # _chem_comp.formula 'C10 H17 N6 O13 P3' _chem_comp.formula_weight 522.196 _chem_comp.id GNP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GNP doub 129 n n PG O2G GNP sing 130 n n PG O3G GNP sing 131 n n PG N3B GNP sing 132 n n O2G HOG2 GNP sing 133 n n O3G HOG3 GNP sing 134 n n N3B PB GNP sing 135 n n N3B HNB3 GNP sing 136 n n PB O1B GNP doub 137 n n PB O2B GNP sing 138 n n PB O3A GNP sing 139 n n O2B HOB2 GNP sing 140 n n O3A PA GNP sing 141 n n PA O1A GNP doub 142 n n PA O2A GNP sing 143 n n PA O5' GNP sing 144 n n O2A HOA2 GNP sing 145 n n O5' C5' GNP sing 146 n n C5' C4' GNP sing 147 n n C5' "H5'2" GNP sing 148 n n C5' "H5'1" GNP sing 149 n n C4' O4' GNP sing 150 n n C4' C3' GNP sing 151 n n C4' H4' GNP sing 152 n n O4' C1' GNP sing 153 n n C3' O3' GNP sing 154 n n C3' C2' GNP sing 155 n n C3' H3' GNP sing 156 n n O3' HO3' GNP sing 157 n n C2' O2' GNP sing 158 n n C2' C1' GNP sing 159 n n C2' H2' GNP sing 160 n n O2' HO2' GNP sing 161 n n C1' N9 GNP sing 162 n n C1' H1' GNP sing 163 n n N9 C8 GNP sing 164 n y N9 C4 GNP sing 165 n y C8 N7 GNP doub 166 n y C8 H8 GNP sing 167 n n N7 C5 GNP sing 168 n y C5 C6 GNP sing 169 n y C5 C4 GNP doub 170 n y C6 O6 GNP doub 171 n n C6 N1 GNP sing 172 n y N1 C2 GNP sing 173 n y N1 HN1 GNP sing 174 n n C2 N2 GNP sing 175 n n C2 N3 GNP doub 176 n y N2 HN21 GNP sing 177 n n N2 HN22 GNP sing 178 n n N3 C4 GNP sing 179 n y # _atom_sites.entry_id 1Z2C _atom_sites.fract_transf_matrix[1][1] 0.006728 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011716 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008105 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 MG A 1 194 2 MG MG . F 4 GNP A 1 195 1 GNP GNP . G 3 MG B 1 5 5 MG MG . H 3 MG C 1 194 4 MG MG . I 4 GNP C 1 195 3 GNP GNP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GNP . . . I 4 15.479 63.003 43.152 1 50.44 ? PG GNP 195 C 1 HETATM 2 O O1G GNP . . . I 4 14.945 61.771 42.479 1 49.51 ? O1G GNP 195 C 1 HETATM 3 O O2G GNP . . . I 4 16.395 62.752 44.322 1 50.63 ? O2G GNP 195 C 1 HETATM 4 O O3G GNP . . . I 4 14.243 63.821 43.445 1 49.69 ? O3G GNP 195 C 1 HETATM 5 N N3B GNP . . . I 4 16.38 63.823 42.131 1 52.53 ? N3B GNP 195 C 1 HETATM 6 P PB GNP . . . I 4 17.11 65.186 42.526 1 54.81 ? PB GNP 195 C 1 HETATM 7 O O1B GNP . . . I 4 16.066 66.23 42.531 1 54.62 ? O1B GNP 195 C 1 HETATM 8 O O2B GNP . . . I 4 17.888 64.938 43.769 1 54.49 ? O2B GNP 195 C 1 HETATM 9 O O3A GNP . . . I 4 18.09 65.664 41.445 1 55.11 ? O3A GNP 195 C 1 HETATM 10 P PA GNP . . . I 4 19.43 65.018 41.087 1 55.62 ? PA GNP 195 C 1 HETATM 11 O O1A GNP . . . I 4 20.407 66.119 41.083 1 54.44 ? O1A GNP 195 C 1 HETATM 12 O O2A GNP . . . I 4 19.757 63.825 41.926 1 53.8 ? O2A GNP 195 C 1 HETATM 13 O O5' GNP . . . I 4 19.257 64.537 39.586 1 54.97 ? O5' GNP 195 C 1 HETATM 14 C C5' GNP . . . I 4 18.967 65.446 38.514 1 56.14 ? C5' GNP 195 C 1 HETATM 15 C C4' GNP . . . I 4 19.867 65.227 37.292 1 57.38 ? C4' GNP 195 C 1 HETATM 16 O O4' GNP . . . I 4 20.17 66.474 36.599 1 57.93 ? O4' GNP 195 C 1 HETATM 17 C C3' GNP . . . I 4 21.206 64.563 37.579 1 57.84 ? C3' GNP 195 C 1 HETATM 18 O O3' GNP . . . I 4 21.357 63.479 36.698 1 58.32 ? O3' GNP 195 C 1 HETATM 19 C C2' GNP . . . I 4 22.279 65.595 37.289 1 58.08 ? C2' GNP 195 C 1 HETATM 20 O O2' GNP . . . I 4 23.289 65.099 36.441 1 58.76 ? O2' GNP 195 C 1 HETATM 21 C C1' GNP . . . I 4 21.564 66.679 36.512 1 59.96 ? C1' GNP 195 C 1 HETATM 22 N N9 GNP . . . I 4 21.919 67.96 37.101 1 60.73 ? N9 GNP 195 C 1 HETATM 23 C C8 GNP . . . I 4 21.887 68.267 38.441 1 61.14 ? C8 GNP 195 C 1 HETATM 24 N N7 GNP . . . I 4 22.267 69.479 38.719 1 60.88 ? N7 GNP 195 C 1 HETATM 25 C C5 GNP . . . I 4 22.576 70.006 37.481 1 60.56 ? C5 GNP 195 C 1 HETATM 26 C C6 GNP . . . I 4 23.039 71.294 37.166 1 60.77 ? C6 GNP 195 C 1 HETATM 27 O O6 GNP . . . I 4 23.262 72.218 37.959 1 61.26 ? O6 GNP 195 C 1 HETATM 28 N N1 GNP . . . I 4 23.242 71.454 35.795 1 61.07 ? N1 GNP 195 C 1 HETATM 29 C C2 GNP . . . I 4 23.017 70.476 34.853 1 61.11 ? C2 GNP 195 C 1 HETATM 30 N N2 GNP . . . I 4 23.282 70.81 33.579 1 61.54 ? N2 GNP 195 C 1 HETATM 31 N N3 GNP . . . I 4 22.574 69.258 35.141 1 60.64 ? N3 GNP 195 C 1 HETATM 32 C C4 GNP . . . I 4 22.378 69.093 36.471 1 60.52 ? C4 GNP 195 C 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 32 #