data_1Z2U
#
_model_server_result.job_id            wO3dWhENFhcF2z8EWPK3Qw 
_model_server_result.datetime_utc      '2024-11-23 01:33:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1z2u 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":201}' 
#
_entry.id    1Z2U 
#
_exptl.entry_id    1Z2U 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              90.121 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (R,R)-2,3-BUTANEDIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          106.45 
_cell.angle_gamma         90 
_cell.entry_id            1Z2U 
_cell.length_a            29.604 
_cell.length_b            60.457 
_cell.length_c            43.98 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1Z2U 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 I N N 
? 4 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG SER 2 A SER -1 1_556 H NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.53 ? 
metalc ? metalc2 A OD1 ASP 115 A ASP 112 1_555 H NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? 
metalc ? metalc3 A O PRO 116 A PRO 113 1_555 H NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? 
metalc ? metalc4 A OH TYR 130 A TYR 127 1_555 H NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? 
metalc ? metalc5 I O6 BU3 . A BU3 201 1_455 H NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? 
metalc ? metalc6 I O5 BU3 . A BU3 201 1_455 H NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? 
#
_chem_comp.formula           'C4 H10 O2' 
_chem_comp.formula_weight    90.121 
_chem_comp.id                BU3 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (R,R)-2,3-BUTANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O6 C3 BU3 sing 70 n n 
O6 HO6 BU3 sing 71 n n 
C3 C4 BU3 sing 72 n n 
C3 C2 BU3 sing 73 n n 
C3 H3 BU3 sing 74 n n 
C4 H41 BU3 sing 75 n n 
C4 H42 BU3 sing 76 n n 
C4 H43 BU3 sing 77 n n 
C2 O5 BU3 sing 78 n n 
C2 C1 BU3 sing 79 n n 
C2 H2 BU3 sing 80 n n 
O5 HO5 BU3 sing 81 n n 
C1 H11 BU3 sing 82 n n 
C1 H12 BU3 sing 83 n n 
C1 H13 BU3 sing 84 n n 
#
_atom_sites.entry_id                     1Z2U 
_atom_sites.fract_transf_matrix[1][1]    0.0338 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.01 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.0165 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.0237 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CL A 1 601 601 CL CL . 
C 2 CL A 1 602 602 CL CL . 
D 2 CL A 1 603 603 CL CL . 
E 2 CL A 1 604 604 CL CL . 
F 2 CL A 1 605 605 CL CL . 
G 2 CL A 1 606 606 CL CL . 
H 3 NA A 1 701 701 NA NA . 
I 4 BU3 A 1 201 201 BU3 BU3 . 
J 4 BU3 A 1 202 202 BU3 BU3 . 
K 5 UNX A 1 501 501 UNX UNX . 
L 5 UNX A 1 502 502 UNX UNX . 
M 5 UNX A 1 503 503 UNX UNX . 
N 5 UNX A 1 504 504 UNX UNX . 
O 5 UNX A 1 505 505 UNX UNX . 
P 5 UNX A 1 506 506 UNX UNX . 
Q 5 UNX A 1 507 507 UNX UNX . 
R 5 UNX A 1 508 508 UNX UNX . 
S 5 UNX A 1 509 509 UNX UNX . 
T 5 UNX A 1 510 510 UNX UNX . 
U 6 HOH A 1 301 301 HOH HOH . 
U 6 HOH A 2 302 302 HOH HOH . 
U 6 HOH A 3 303 303 HOH HOH . 
U 6 HOH A 4 304 304 HOH HOH . 
U 6 HOH A 5 305 305 HOH HOH . 
U 6 HOH A 6 306 306 HOH HOH . 
U 6 HOH A 7 307 307 HOH HOH . 
U 6 HOH A 8 308 308 HOH HOH . 
U 6 HOH A 9 309 309 HOH HOH . 
U 6 HOH A 10 310 310 HOH HOH . 
U 6 HOH A 11 311 311 HOH HOH . 
U 6 HOH A 12 312 312 HOH HOH . 
U 6 HOH A 13 313 313 HOH HOH . 
U 6 HOH A 14 314 314 HOH HOH . 
U 6 HOH A 15 315 315 HOH HOH . 
U 6 HOH A 16 316 316 HOH HOH . 
U 6 HOH A 17 317 317 HOH HOH . 
U 6 HOH A 18 318 318 HOH HOH . 
U 6 HOH A 19 319 319 HOH HOH . 
U 6 HOH A 20 320 320 HOH HOH . 
U 6 HOH A 21 321 321 HOH HOH . 
U 6 HOH A 22 322 322 HOH HOH . 
U 6 HOH A 23 323 323 HOH HOH . 
U 6 HOH A 24 324 324 HOH HOH . 
U 6 HOH A 25 325 325 HOH HOH . 
U 6 HOH A 26 326 326 HOH HOH . 
U 6 HOH A 27 327 327 HOH HOH . 
U 6 HOH A 28 328 328 HOH HOH . 
U 6 HOH A 29 329 329 HOH HOH . 
U 6 HOH A 30 330 330 HOH HOH . 
U 6 HOH A 31 331 331 HOH HOH . 
U 6 HOH A 32 332 332 HOH HOH . 
U 6 HOH A 33 333 333 HOH HOH . 
U 6 HOH A 34 334 334 HOH HOH . 
U 6 HOH A 35 335 335 HOH HOH . 
U 6 HOH A 36 336 336 HOH HOH . 
U 6 HOH A 37 337 337 HOH HOH . 
U 6 HOH A 38 338 338 HOH HOH . 
U 6 HOH A 39 339 339 HOH HOH . 
U 6 HOH A 40 340 340 HOH HOH . 
U 6 HOH A 41 341 341 HOH HOH . 
U 6 HOH A 42 342 342 HOH HOH . 
U 6 HOH A 43 343 343 HOH HOH . 
U 6 HOH A 44 344 344 HOH HOH . 
U 6 HOH A 45 345 345 HOH HOH . 
U 6 HOH A 46 346 346 HOH HOH . 
U 6 HOH A 47 347 347 HOH HOH . 
U 6 HOH A 48 348 348 HOH HOH . 
U 6 HOH A 49 349 349 HOH HOH . 
U 6 HOH A 50 350 350 HOH HOH . 
U 6 HOH A 51 351 351 HOH HOH . 
U 6 HOH A 52 352 352 HOH HOH . 
U 6 HOH A 53 353 353 HOH HOH . 
U 6 HOH A 54 354 354 HOH HOH . 
U 6 HOH A 55 355 355 HOH HOH . 
U 6 HOH A 56 356 356 HOH HOH . 
U 6 HOH A 57 357 357 HOH HOH . 
U 6 HOH A 58 358 358 HOH HOH . 
U 6 HOH A 59 359 359 HOH HOH . 
U 6 HOH A 60 360 360 HOH HOH . 
U 6 HOH A 61 361 361 HOH HOH . 
U 6 HOH A 62 362 362 HOH HOH . 
U 6 HOH A 63 363 363 HOH HOH . 
U 6 HOH A 64 364 364 HOH HOH . 
U 6 HOH A 65 365 365 HOH HOH . 
U 6 HOH A 66 366 366 HOH HOH . 
U 6 HOH A 67 367 367 HOH HOH . 
U 6 HOH A 68 368 368 HOH HOH . 
U 6 HOH A 69 369 369 HOH HOH . 
U 6 HOH A 70 370 370 HOH HOH . 
U 6 HOH A 71 371 371 HOH HOH . 
U 6 HOH A 72 372 372 HOH HOH . 
U 6 HOH A 73 373 373 HOH HOH . 
U 6 HOH A 74 374 374 HOH HOH . 
U 6 HOH A 75 375 375 HOH HOH . 
U 6 HOH A 76 376 376 HOH HOH . 
U 6 HOH A 77 377 377 HOH HOH . 
U 6 HOH A 78 378 378 HOH HOH . 
U 6 HOH A 79 379 379 HOH HOH . 
U 6 HOH A 80 380 380 HOH HOH . 
U 6 HOH A 81 381 381 HOH HOH . 
U 6 HOH A 82 382 382 HOH HOH . 
U 6 HOH A 83 383 383 HOH HOH . 
U 6 HOH A 84 384 384 HOH HOH . 
U 6 HOH A 85 385 385 HOH HOH . 
U 6 HOH A 86 386 386 HOH HOH . 
U 6 HOH A 87 387 387 HOH HOH . 
U 6 HOH A 88 388 388 HOH HOH . 
U 6 HOH A 89 389 389 HOH HOH . 
U 6 HOH A 90 390 390 HOH HOH . 
U 6 HOH A 91 391 391 HOH HOH . 
U 6 HOH A 92 392 392 HOH HOH . 
U 6 HOH A 93 393 393 HOH HOH . 
U 6 HOH A 94 394 394 HOH HOH . 
U 6 HOH A 95 395 395 HOH HOH . 
U 6 HOH A 96 396 396 HOH HOH . 
U 6 HOH A 97 397 397 HOH HOH . 
U 6 HOH A 98 398 398 HOH HOH . 
U 6 HOH A 99 399 399 HOH HOH . 
U 6 HOH A 100 400 400 HOH HOH . 
U 6 HOH A 101 401 401 HOH HOH . 
U 6 HOH A 102 402 402 HOH HOH . 
U 6 HOH A 103 403 403 HOH HOH . 
U 6 HOH A 104 404 404 HOH HOH . 
U 6 HOH A 105 405 405 HOH HOH . 
U 6 HOH A 106 406 406 HOH HOH . 
U 6 HOH A 107 407 407 HOH HOH . 
U 6 HOH A 108 408 408 HOH HOH . 
U 6 HOH A 109 409 409 HOH HOH . 
U 6 HOH A 110 410 410 HOH HOH . 
U 6 HOH A 111 411 411 HOH HOH . 
U 6 HOH A 112 412 412 HOH HOH . 
U 6 HOH A 113 413 413 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O6 BU3 . . . I 4 8.608 -83.448 28.419 1 7.06 ? O6 BU3 201 A 1 
HETATM 2 C C3 BU3 . . . I 4 7.458 -83.501 27.563 1 6.74 ? C3 BU3 201 A 1 
HETATM 3 C C4 BU3 . . . I 4 6.923 -84.926 27.513 1 8.68 ? C4 BU3 201 A 1 
HETATM 4 C C2 BU3 . . . I 4 7.888 -82.972 26.198 1 7.29 ? C2 BU3 201 A 1 
HETATM 5 O O5 BU3 . . . I 4 8.453 -81.669 26.389 1 7.51 ? O5 BU3 201 A 1 
HETATM 6 C C1 BU3 . . . I 4 6.734 -82.904 25.196 1 8.81 ? C1 BU3 201 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           271 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           6 
#