data_1Z34 # _model_server_result.job_id TKm2BM2joITGPedRQPJHGw _model_server_result.datetime_utc '2024-11-22 23:06:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1z34 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":300}' # _entry.id 1Z34 # _exptl.entry_id 1Z34 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 269.232 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-(6-AMINO-2-FLUORO-PURIN-9-YL)-2-HYDROXYMETHYL-TETRAHYDRO-FURAN-3-OL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1Z34 _cell.length_a 136.8 _cell.length_b 136.8 _cell.length_c 136.8 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1Z34 _symmetry.cell_setting ? _symmetry.Int_Tables_number 213 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 3 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 3 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 4 'crystal symmetry operation' 14_444 -y-1/4,-x-1/4,-z-1/4 0 -1 0 -1 0 0 0 0 -1 -34.2 -34.2 -34.2 5 'crystal symmetry operation' 19_444 -x-1/4,-z-1/4,-y-1/4 -1 0 0 0 0 -1 0 -1 0 -34.2 -34.2 -34.2 6 'crystal symmetry operation' 24_444 -z-1/4,-y-1/4,-x-1/4 0 0 -1 0 -1 0 -1 0 0 -34.2 -34.2 -34.2 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H12 F N5 O3' _chem_comp.formula_weight 269.232 _chem_comp.id 2FD _chem_comp.mon_nstd_flag . _chem_comp.name 5-(6-AMINO-2-FLUORO-PURIN-9-YL)-2-HYDROXYMETHYL-TETRAHYDRO-FURAN-3-OL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2-FLUORO-2'-DEOXYADENOSINE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O5' C5' 2FD sing 1 n n O5' H5' 2FD sing 2 n n C5' C4' 2FD sing 3 n n C5' "H5'1" 2FD sing 4 n n C5' "H5'2" 2FD sing 5 n n C4' O4' 2FD sing 6 n n C4' C3' 2FD sing 7 n n C4' H4' 2FD sing 8 n n O4' C1' 2FD sing 9 n n C1' N9 2FD sing 10 n n C1' C2' 2FD sing 11 n n C1' H1' 2FD sing 12 n n N9 C4 2FD sing 13 n y N9 C8 2FD sing 14 n y C4 N3 2FD doub 15 n y C4 C5 2FD sing 16 n y N3 C2 2FD sing 17 n y C2 F 2FD sing 18 n n C2 N1 2FD doub 19 n y N1 C6 2FD sing 20 n y C6 N6 2FD sing 21 n n C6 C5 2FD doub 22 n y N6 HN61 2FD sing 23 n n N6 HN62 2FD sing 24 n n C5 N7 2FD sing 25 n y N7 C8 2FD doub 26 n y C8 H8 2FD sing 27 n n C2' C3' 2FD sing 28 n n C2' "H2'1" 2FD sing 29 n n C2' "H2'2" 2FD sing 30 n n C3' O3' 2FD sing 31 n n C3' H3' 2FD sing 32 n n O3' H1 2FD sing 33 n n # _atom_sites.entry_id 1Z34 _atom_sites.fract_transf_matrix[1][1] 0.00731 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00731 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00731 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 2FD A 1 300 300 2FD 2FD . C 3 HOH A 1 301 1 HOH HOH . C 3 HOH A 2 302 2 HOH HOH . C 3 HOH A 3 303 3 HOH HOH . C 3 HOH A 4 304 4 HOH HOH . C 3 HOH A 5 305 5 HOH HOH . C 3 HOH A 6 306 6 HOH HOH . C 3 HOH A 7 307 7 HOH HOH . C 3 HOH A 8 308 8 HOH HOH . C 3 HOH A 9 309 9 HOH HOH . C 3 HOH A 10 310 10 HOH HOH . C 3 HOH A 11 311 11 HOH HOH . C 3 HOH A 12 312 12 HOH HOH . C 3 HOH A 13 313 13 HOH HOH . C 3 HOH A 14 314 14 HOH HOH . C 3 HOH A 15 315 15 HOH HOH . C 3 HOH A 16 316 16 HOH HOH . C 3 HOH A 17 317 17 HOH HOH . C 3 HOH A 18 318 18 HOH HOH . C 3 HOH A 19 319 19 HOH HOH . C 3 HOH A 20 320 20 HOH HOH . C 3 HOH A 21 321 21 HOH HOH . C 3 HOH A 22 322 22 HOH HOH . C 3 HOH A 23 323 23 HOH HOH . C 3 HOH A 24 324 24 HOH HOH . C 3 HOH A 25 325 25 HOH HOH . C 3 HOH A 26 326 26 HOH HOH . C 3 HOH A 27 327 27 HOH HOH . C 3 HOH A 28 328 28 HOH HOH . C 3 HOH A 29 329 29 HOH HOH . C 3 HOH A 30 330 30 HOH HOH . C 3 HOH A 31 331 31 HOH HOH . C 3 HOH A 32 332 32 HOH HOH . C 3 HOH A 33 333 33 HOH HOH . C 3 HOH A 34 334 34 HOH HOH . C 3 HOH A 35 335 35 HOH HOH . C 3 HOH A 36 336 36 HOH HOH . C 3 HOH A 37 337 37 HOH HOH . C 3 HOH A 38 338 38 HOH HOH . C 3 HOH A 39 339 39 HOH HOH . C 3 HOH A 40 340 40 HOH HOH . C 3 HOH A 41 341 41 HOH HOH . C 3 HOH A 42 342 42 HOH HOH . C 3 HOH A 43 343 43 HOH HOH . C 3 HOH A 44 344 44 HOH HOH . C 3 HOH A 45 345 45 HOH HOH . C 3 HOH A 46 346 46 HOH HOH . C 3 HOH A 47 347 47 HOH HOH . C 3 HOH A 48 348 48 HOH HOH . C 3 HOH A 49 349 49 HOH HOH . C 3 HOH A 50 350 50 HOH HOH . C 3 HOH A 51 351 51 HOH HOH . C 3 HOH A 52 352 52 HOH HOH . C 3 HOH A 53 353 53 HOH HOH . C 3 HOH A 54 354 54 HOH HOH . C 3 HOH A 55 355 55 HOH HOH . C 3 HOH A 56 356 56 HOH HOH . C 3 HOH A 57 357 57 HOH HOH . C 3 HOH A 58 358 58 HOH HOH . C 3 HOH A 59 359 59 HOH HOH . C 3 HOH A 60 360 60 HOH HOH . C 3 HOH A 61 361 61 HOH HOH . C 3 HOH A 62 362 62 HOH HOH . C 3 HOH A 63 363 63 HOH HOH . C 3 HOH A 64 364 64 HOH HOH . C 3 HOH A 65 365 65 HOH HOH . C 3 HOH A 66 366 66 HOH HOH . C 3 HOH A 67 367 67 HOH HOH . C 3 HOH A 68 368 68 HOH HOH . C 3 HOH A 69 369 69 HOH HOH . C 3 HOH A 70 370 70 HOH HOH . C 3 HOH A 71 371 71 HOH HOH . C 3 HOH A 72 372 72 HOH HOH . C 3 HOH A 73 373 73 HOH HOH . C 3 HOH A 74 374 74 HOH HOH . C 3 HOH A 75 375 75 HOH HOH . C 3 HOH A 76 376 76 HOH HOH . C 3 HOH A 77 377 77 HOH HOH . C 3 HOH A 78 378 78 HOH HOH . C 3 HOH A 79 379 79 HOH HOH . C 3 HOH A 80 380 80 HOH HOH . C 3 HOH A 81 381 81 HOH HOH . C 3 HOH A 82 382 82 HOH HOH . C 3 HOH A 83 383 83 HOH HOH . C 3 HOH A 84 384 84 HOH HOH . C 3 HOH A 85 385 85 HOH HOH . C 3 HOH A 86 386 86 HOH HOH . C 3 HOH A 87 387 87 HOH HOH . C 3 HOH A 88 388 88 HOH HOH . C 3 HOH A 89 389 89 HOH HOH . C 3 HOH A 90 390 90 HOH HOH . C 3 HOH A 91 391 91 HOH HOH . C 3 HOH A 92 392 92 HOH HOH . C 3 HOH A 93 393 93 HOH HOH . C 3 HOH A 94 394 94 HOH HOH . C 3 HOH A 95 395 95 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O5' 2FD . . . B 2 -19.101 -42.676 -5.735 1 44.43 ? O5' 2FD 300 A 1 HETATM 2 C C5' 2FD . . . B 2 -18.261 -41.553 -5.976 1 41.26 ? C5' 2FD 300 A 1 HETATM 3 C C4' 2FD . . . B 2 -16.87 -41.765 -5.339 1 40.98 ? C4' 2FD 300 A 1 HETATM 4 O O4' 2FD . . . B 2 -16.141 -42.961 -5.802 1 41.19 ? O4' 2FD 300 A 1 HETATM 5 C C1' 2FD . . . B 2 -15.286 -42.654 -6.928 1 41.36 ? C1' 2FD 300 A 1 HETATM 6 N N9 2FD . . . B 2 -16.025 -43.18 -8.155 1 41.69 ? N9 2FD 300 A 1 HETATM 7 C C4 2FD . . . B 2 -16.773 -42.569 -9.166 1 40.57 ? C4 2FD 300 A 1 HETATM 8 N N3 2FD . . . B 2 -17.056 -41.23 -9.332 1 41.74 ? N3 2FD 300 A 1 HETATM 9 C C2 2FD . . . B 2 -17.817 -40.95 -10.42 1 41.44 ? C2 2FD 300 A 1 HETATM 10 F F 2FD . . . B 2 -18.134 -39.711 -10.652 1 42.57 ? F 2FD 300 A 1 HETATM 11 N N1 2FD . . . B 2 -18.289 -41.85 -11.304 1 41.55 ? N1 2FD 300 A 1 HETATM 12 C C6 2FD . . . B 2 -17.998 -43.169 -11.121 1 41.75 ? C6 2FD 300 A 1 HETATM 13 N N6 2FD . . . B 2 -18.469 -44.028 -11.994 1 44.39 ? N6 2FD 300 A 1 HETATM 14 C C5 2FD . . . B 2 -17.201 -43.574 -10.004 1 40.56 ? C5 2FD 300 A 1 HETATM 15 N N7 2FD . . . B 2 -16.755 -44.789 -9.567 1 41.59 ? N7 2FD 300 A 1 HETATM 16 C C8 2FD . . . B 2 -16.091 -44.469 -8.503 1 40.83 ? C8 2FD 300 A 1 HETATM 17 C C2' 2FD . . . B 2 -15.108 -41.109 -6.809 1 40.42 ? C2' 2FD 300 A 1 HETATM 18 C C3' 2FD . . . B 2 -15.91 -40.596 -5.577 1 41.35 ? C3' 2FD 300 A 1 HETATM 19 O O3' 2FD . . . B 2 -15.123 -40.479 -4.417 1 38.74 ? O3' 2FD 300 A 1 # _model_server_stats.io_time_ms 39 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 19 #