data_1Z36 # _model_server_result.job_id RsXjGTFpnA5-usGjCk3f5g _model_server_result.datetime_utc '2024-11-24 15:02:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1z36 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":300}' # _entry.id 1Z36 # _exptl.entry_id 1Z36 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 267.241 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1S)-1-(7-amino-1H-pyrazolo[4,3-d]pyrimidin-3-yl)-1,4-anhydro-D-ribitol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1Z36 _cell.length_a 136.8 _cell.length_b 136.8 _cell.length_c 136.8 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1Z36 _symmetry.cell_setting ? _symmetry.Int_Tables_number 213 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 3 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 3 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 4 'crystal symmetry operation' 14_444 -y-1/4,-x-1/4,-z-1/4 0 -1 0 -1 0 0 0 0 -1 -34.2 -34.2 -34.2 5 'crystal symmetry operation' 19_444 -x-1/4,-z-1/4,-y-1/4 -1 0 0 0 0 -1 0 -1 0 -34.2 -34.2 -34.2 6 'crystal symmetry operation' 24_444 -z-1/4,-y-1/4,-x-1/4 0 0 -1 0 -1 0 -1 0 0 -34.2 -34.2 -34.2 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H13 N5 O4' _chem_comp.formula_weight 267.241 _chem_comp.id FMC _chem_comp.mon_nstd_flag . _chem_comp.name (1S)-1-(7-amino-1H-pyrazolo[4,3-d]pyrimidin-3-yl)-1,4-anhydro-D-ribitol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMC doub 83 n y N1 C6 FMC sing 84 n y C2 N3 FMC sing 85 n y C2 H2 FMC sing 86 n n N3 C4 FMC doub 87 n y C4 C5 FMC sing 88 n y C4 C9 FMC sing 89 n y C5 C6 FMC doub 90 n y C5 N7 FMC sing 91 n y C6 N6 FMC sing 92 n n N6 HN6 FMC sing 93 n n N6 HN6A FMC sing 94 n n N7 N8 FMC sing 95 n y N7 HN7 FMC sing 96 n n N8 C9 FMC doub 97 n y C9 C1' FMC sing 98 n n C1' C2' FMC sing 99 n n C1' O4' FMC sing 100 n n C1' H1' FMC sing 101 n n C2' O2' FMC sing 102 n n C2' C3' FMC sing 103 n n C2' H2' FMC sing 104 n n O2' HO2' FMC sing 105 n n C3' O3' FMC sing 106 n n C3' C4' FMC sing 107 n n C3' H3' FMC sing 108 n n O3' HO3' FMC sing 109 n n C4' O4' FMC sing 110 n n C4' C5' FMC sing 111 n n C4' H4' FMC sing 112 n n C5' O5' FMC sing 113 n n C5' H5' FMC sing 114 n n C5' "H5'A" FMC sing 115 n n O5' HO5' FMC sing 116 n n # _atom_sites.entry_id 1Z36 _atom_sites.fract_transf_matrix[1][1] 0.00731 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00731 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00731 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMC A 1 300 300 FMC FMC . C 3 HOH A 1 301 1 HOH HOH . C 3 HOH A 2 302 2 HOH HOH . C 3 HOH A 3 303 3 HOH HOH . C 3 HOH A 4 304 4 HOH HOH . C 3 HOH A 5 305 5 HOH HOH . C 3 HOH A 6 306 6 HOH HOH . C 3 HOH A 7 307 7 HOH HOH . C 3 HOH A 8 308 8 HOH HOH . C 3 HOH A 9 309 9 HOH HOH . C 3 HOH A 10 310 10 HOH HOH . C 3 HOH A 11 311 11 HOH HOH . C 3 HOH A 12 312 12 HOH HOH . C 3 HOH A 13 313 13 HOH HOH . C 3 HOH A 14 314 14 HOH HOH . C 3 HOH A 15 315 15 HOH HOH . C 3 HOH A 16 316 16 HOH HOH . C 3 HOH A 17 317 17 HOH HOH . C 3 HOH A 18 318 18 HOH HOH . C 3 HOH A 19 319 19 HOH HOH . C 3 HOH A 20 320 20 HOH HOH . C 3 HOH A 21 321 21 HOH HOH . C 3 HOH A 22 322 22 HOH HOH . C 3 HOH A 23 323 23 HOH HOH . C 3 HOH A 24 324 24 HOH HOH . C 3 HOH A 25 325 25 HOH HOH . C 3 HOH A 26 326 26 HOH HOH . C 3 HOH A 27 327 27 HOH HOH . C 3 HOH A 28 328 28 HOH HOH . C 3 HOH A 29 329 29 HOH HOH . C 3 HOH A 30 330 30 HOH HOH . C 3 HOH A 31 331 31 HOH HOH . C 3 HOH A 32 332 32 HOH HOH . C 3 HOH A 33 333 33 HOH HOH . C 3 HOH A 34 334 34 HOH HOH . C 3 HOH A 35 335 35 HOH HOH . C 3 HOH A 36 336 36 HOH HOH . C 3 HOH A 37 337 37 HOH HOH . C 3 HOH A 38 338 38 HOH HOH . C 3 HOH A 39 339 39 HOH HOH . C 3 HOH A 40 340 40 HOH HOH . C 3 HOH A 41 341 41 HOH HOH . C 3 HOH A 42 342 42 HOH HOH . C 3 HOH A 43 343 43 HOH HOH . C 3 HOH A 44 344 44 HOH HOH . C 3 HOH A 45 345 45 HOH HOH . C 3 HOH A 46 346 46 HOH HOH . C 3 HOH A 47 347 47 HOH HOH . C 3 HOH A 48 348 48 HOH HOH . C 3 HOH A 49 349 49 HOH HOH . C 3 HOH A 50 350 50 HOH HOH . C 3 HOH A 51 351 51 HOH HOH . C 3 HOH A 52 352 52 HOH HOH . C 3 HOH A 53 353 53 HOH HOH . C 3 HOH A 54 354 54 HOH HOH . C 3 HOH A 55 355 55 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMC . . . B 2 -18.204 -41.298 -11.222 1 53.53 ? N1 FMC 300 A 1 HETATM 2 C C2 FMC . . . B 2 -17.726 -40.478 -10.3 1 52.7 ? C2 FMC 300 A 1 HETATM 3 N N3 FMC . . . B 2 -17.029 -40.922 -9.268 1 52.28 ? N3 FMC 300 A 1 HETATM 4 C C4 FMC . . . B 2 -16.794 -42.235 -9.136 1 51.41 ? C4 FMC 300 A 1 HETATM 5 C C5 FMC . . . B 2 -17.274 -43.131 -10.079 1 51.99 ? C5 FMC 300 A 1 HETATM 6 C C6 FMC . . . B 2 -17.999 -42.622 -11.15 1 53.86 ? C6 FMC 300 A 1 HETATM 7 N N6 FMC . . . B 2 -18.473 -43.433 -12.092 1 55.22 ? N6 FMC 300 A 1 HETATM 8 N N7 FMC . . . B 2 -16.905 -44.351 -9.693 1 51.74 ? N7 FMC 300 A 1 HETATM 9 N N8 FMC . . . B 2 -16.265 -44.31 -8.64 1 52.12 ? N8 FMC 300 A 1 HETATM 10 C C9 FMC . . . B 2 -16.147 -43.052 -8.22 1 50.52 ? C9 FMC 300 A 1 HETATM 11 C C1' FMC . . . B 2 -15.454 -42.624 -6.922 1 48.99 ? C1' FMC 300 A 1 HETATM 12 C C2' FMC . . . B 2 -15.29 -41.105 -6.804 1 49.11 ? C2' FMC 300 A 1 HETATM 13 O O2' FMC . . . B 2 -13.914 -40.732 -6.691 1 51.13 ? O2' FMC 300 A 1 HETATM 14 C C3' FMC . . . B 2 -16.048 -40.733 -5.528 1 47.37 ? C3' FMC 300 A 1 HETATM 15 O O3' FMC . . . B 2 -15.15 -40.648 -4.418 1 45.5 ? O3' FMC 300 A 1 HETATM 16 C C4' FMC . . . B 2 -17.02 -41.903 -5.372 1 45.85 ? C4' FMC 300 A 1 HETATM 17 O O4' FMC . . . B 2 -16.227 -43.031 -5.777 1 47.64 ? O4' FMC 300 A 1 HETATM 18 C C5' FMC . . . B 2 -18.286 -41.751 -6.22 1 43.46 ? C5' FMC 300 A 1 HETATM 19 O O5' FMC . . . B 2 -19.08 -42.933 -6.092 1 43.06 ? O5' FMC 300 A 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 19 #