data_1Z38 # _model_server_result.job_id cqsUWoTN3T7xJPRFtNGxpw _model_server_result.datetime_utc '2024-11-05 08:29:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1z38 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":300}' # _entry.id 1Z38 # _exptl.entry_id 1Z38 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 268.226 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description INOSINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1Z38 _cell.length_a 136.8 _cell.length_b 136.8 _cell.length_c 136.8 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1Z38 _symmetry.cell_setting ? _symmetry.Int_Tables_number 213 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 3 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 3 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 4 'crystal symmetry operation' 14_444 -y-1/4,-x-1/4,-z-1/4 0 -1 0 -1 0 0 0 0 -1 -34.2 -34.2 -34.2 5 'crystal symmetry operation' 19_444 -x-1/4,-z-1/4,-y-1/4 -1 0 0 0 0 -1 0 -1 0 -34.2 -34.2 -34.2 6 'crystal symmetry operation' 24_444 -z-1/4,-y-1/4,-x-1/4 0 0 -1 0 -1 0 -1 0 0 -34.2 -34.2 -34.2 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H12 N4 O5' _chem_comp.formula_weight 268.226 _chem_comp.id NOS _chem_comp.mon_nstd_flag . _chem_comp.name INOSINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 NOS sing 237 n n N1 C6 NOS sing 238 n n C2 N3 NOS doub 239 n n O6 C6 NOS doub 240 n n C6 C5 NOS sing 241 n n N3 C4 NOS sing 242 n n O2' C2' NOS sing 243 n n C5 C4 NOS doub 244 n y C5 N7 NOS sing 245 n y C4 N9 NOS sing 246 n y N7 C8 NOS doub 247 n y N9 C8 NOS sing 248 n y N9 C1' NOS sing 249 n n C1' C2' NOS sing 250 n n C1' O4' NOS sing 251 n n C2' C3' NOS sing 252 n n O4' C4' NOS sing 253 n n C3' O3' NOS sing 254 n n C3' C4' NOS sing 255 n n C4' C5' NOS sing 256 n n C5' O5' NOS sing 257 n n C2 H1 NOS sing 258 n n N1 H2 NOS sing 259 n n C8 H3 NOS sing 260 n n C5' H4 NOS sing 261 n n C5' H5 NOS sing 262 n n O5' H6 NOS sing 263 n n C4' H7 NOS sing 264 n n C1' H8 NOS sing 265 n n C2' H9 NOS sing 266 n n O2' H10 NOS sing 267 n n C3' H11 NOS sing 268 n n O3' H12 NOS sing 269 n n # _atom_sites.entry_id 1Z38 _atom_sites.fract_transf_matrix[1][1] 0.00731 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00731 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00731 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NOS A 1 300 300 NOS NOS . C 3 HOH A 1 301 1 HOH HOH . C 3 HOH A 2 302 2 HOH HOH . C 3 HOH A 3 303 3 HOH HOH . C 3 HOH A 4 304 4 HOH HOH . C 3 HOH A 5 305 5 HOH HOH . C 3 HOH A 6 306 6 HOH HOH . C 3 HOH A 7 307 7 HOH HOH . C 3 HOH A 8 308 8 HOH HOH . C 3 HOH A 9 309 9 HOH HOH . C 3 HOH A 10 310 10 HOH HOH . C 3 HOH A 11 311 11 HOH HOH . C 3 HOH A 12 312 12 HOH HOH . C 3 HOH A 13 313 13 HOH HOH . C 3 HOH A 14 314 14 HOH HOH . C 3 HOH A 15 315 15 HOH HOH . C 3 HOH A 16 316 16 HOH HOH . C 3 HOH A 17 317 17 HOH HOH . C 3 HOH A 18 318 18 HOH HOH . C 3 HOH A 19 319 19 HOH HOH . C 3 HOH A 20 320 20 HOH HOH . C 3 HOH A 21 321 21 HOH HOH . C 3 HOH A 22 322 22 HOH HOH . C 3 HOH A 23 323 23 HOH HOH . C 3 HOH A 24 324 24 HOH HOH . C 3 HOH A 25 325 25 HOH HOH . C 3 HOH A 26 326 26 HOH HOH . C 3 HOH A 27 327 27 HOH HOH . C 3 HOH A 28 328 28 HOH HOH . C 3 HOH A 29 329 29 HOH HOH . C 3 HOH A 30 330 30 HOH HOH . C 3 HOH A 31 331 31 HOH HOH . C 3 HOH A 32 332 32 HOH HOH . C 3 HOH A 33 333 33 HOH HOH . C 3 HOH A 34 334 34 HOH HOH . C 3 HOH A 35 335 35 HOH HOH . C 3 HOH A 36 336 36 HOH HOH . C 3 HOH A 37 337 37 HOH HOH . C 3 HOH A 38 338 38 HOH HOH . C 3 HOH A 39 339 39 HOH HOH . C 3 HOH A 40 340 40 HOH HOH . C 3 HOH A 41 341 41 HOH HOH . C 3 HOH A 42 342 42 HOH HOH . C 3 HOH A 43 343 43 HOH HOH . C 3 HOH A 44 344 44 HOH HOH . C 3 HOH A 45 345 45 HOH HOH . C 3 HOH A 46 346 46 HOH HOH . C 3 HOH A 47 347 47 HOH HOH . C 3 HOH A 48 348 48 HOH HOH . C 3 HOH A 49 349 49 HOH HOH . C 3 HOH A 50 350 50 HOH HOH . C 3 HOH A 51 351 51 HOH HOH . C 3 HOH A 52 352 52 HOH HOH . C 3 HOH A 53 353 53 HOH HOH . C 3 HOH A 54 354 54 HOH HOH . C 3 HOH A 55 355 55 HOH HOH . C 3 HOH A 56 356 56 HOH HOH . C 3 HOH A 57 357 57 HOH HOH . C 3 HOH A 58 358 58 HOH HOH . C 3 HOH A 59 359 59 HOH HOH . C 3 HOH A 60 360 60 HOH HOH . C 3 HOH A 61 361 61 HOH HOH . C 3 HOH A 62 362 62 HOH HOH . C 3 HOH A 63 363 63 HOH HOH . C 3 HOH A 64 364 64 HOH HOH . C 3 HOH A 65 365 65 HOH HOH . C 3 HOH A 66 366 66 HOH HOH . C 3 HOH A 67 367 67 HOH HOH . C 3 HOH A 68 368 68 HOH HOH . C 3 HOH A 69 369 69 HOH HOH . C 3 HOH A 70 370 70 HOH HOH . C 3 HOH A 71 371 71 HOH HOH . C 3 HOH A 72 372 72 HOH HOH . C 3 HOH A 73 373 73 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N9 NOS . . . B 2 -16.174 -43.002 -8.187 1 43.04 ? N9 NOS 300 A 1 HETATM 2 C C4 NOS . . . B 2 -16.809 -42.189 -9.029 1 41.95 ? C4 NOS 300 A 1 HETATM 3 N N3 NOS . . . B 2 -17.024 -40.863 -9.019 1 42.14 ? N3 NOS 300 A 1 HETATM 4 C C2 NOS . . . B 2 -17.711 -40.255 -9.97 1 41.08 ? C2 NOS 300 A 1 HETATM 5 N N1 NOS . . . B 2 -18.244 -40.994 -11.034 1 42.55 ? N1 NOS 300 A 1 HETATM 6 C C6 NOS . . . B 2 -18.037 -42.379 -11.078 1 42.46 ? C6 NOS 300 A 1 HETATM 7 O O6 NOS . . . B 2 -18.495 -43.052 -11.999 1 42.53 ? O6 NOS 300 A 1 HETATM 8 C C5 NOS . . . B 2 -17.308 -42.978 -10.058 1 40.52 ? C5 NOS 300 A 1 HETATM 9 N N7 NOS . . . B 2 -16.954 -44.234 -9.804 1 39.85 ? N7 NOS 300 A 1 HETATM 10 C C8 NOS . . . B 2 -16.265 -44.241 -8.665 1 41.38 ? C8 NOS 300 A 1 HETATM 11 C C5' NOS . . . B 2 -18.344 -41.757 -6.296 1 41.31 ? C5' NOS 300 A 1 HETATM 12 O O5' NOS . . . B 2 -19.165 -42.891 -6.003 1 43.49 ? O5' NOS 300 A 1 HETATM 13 C C4' NOS . . . B 2 -17.054 -41.849 -5.478 1 41.03 ? C4' NOS 300 A 1 HETATM 14 O O4' NOS . . . B 2 -16.244 -42.995 -5.786 1 41.69 ? O4' NOS 300 A 1 HETATM 15 C C1' NOS . . . B 2 -15.461 -42.635 -6.939 1 42.01 ? C1' NOS 300 A 1 HETATM 16 C C2' NOS . . . B 2 -15.196 -41.132 -6.806 1 42.44 ? C2' NOS 300 A 1 HETATM 17 O O2' NOS . . . B 2 -13.828 -40.904 -6.456 1 43.37 ? O2' NOS 300 A 1 HETATM 18 C C3' NOS . . . B 2 -16.102 -40.667 -5.664 1 40.82 ? C3' NOS 300 A 1 HETATM 19 O O3' NOS . . . B 2 -15.329 -40.478 -4.476 1 36.52 ? O3' NOS 300 A 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 19 #