data_1Z3C # _model_server_result.job_id WIh5V9jIlTHG42XuOOmVUQ _model_server_result.datetime_utc '2025-03-10 20:14:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1z3c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":299}' # _entry.id 1Z3C # _exptl.entry_id 1Z3C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 381.387 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "S-5'-AZAMETHIONINE-5'-DEOXYADENOSINE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1Z3C _cell.length_a 63.253 _cell.length_b 63.253 _cell.length_c 111.841 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1Z3C _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H23 N7 O5' _chem_comp.formula_weight 381.387 _chem_comp.id SA8 _chem_comp.mon_nstd_flag . _chem_comp.name "S-5'-AZAMETHIONINE-5'-DEOXYADENOSINE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "5'-[N-[(3S)-3-AMINO-3-CARBOXYPROPYL]-N-METHYLAMINO]-5'-DEOXYADENOSINE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SA8 sing 277 n n N HN1 SA8 sing 278 n n N HN2 SA8 sing 279 n n CA C SA8 sing 280 n n CA CB SA8 sing 281 n n CA HA SA8 sing 282 n n C O SA8 sing 283 n n C OXT SA8 doub 284 n n O HO SA8 sing 285 n n CB CG SA8 sing 286 n n CB HB1 SA8 sing 287 n n CB HB2 SA8 sing 288 n n CG ND SA8 sing 289 n n CG HG1 SA8 sing 290 n n CG HG2 SA8 sing 291 n n ND CE SA8 sing 292 n n ND C5' SA8 sing 293 n n CE HE1 SA8 sing 294 n n CE HE2 SA8 sing 295 n n CE HE3 SA8 sing 296 n n C5' C4' SA8 sing 297 n n C5' "H5'1" SA8 sing 298 n n C5' "H5'2" SA8 sing 299 n n C4' O4' SA8 sing 300 n n C4' C3' SA8 sing 301 n n C4' H4' SA8 sing 302 n n O4' C1' SA8 sing 303 n n C3' O3' SA8 sing 304 n n C3' C2' SA8 sing 305 n n C3' H3' SA8 sing 306 n n O3' H2 SA8 sing 307 n n C2' O2' SA8 sing 308 n n C2' C1' SA8 sing 309 n n C2' H2' SA8 sing 310 n n O2' H1 SA8 sing 311 n n C1' N9 SA8 sing 312 n n C1' H1' SA8 sing 313 n n N9 C8 SA8 sing 314 n y N9 C4 SA8 sing 315 n y C8 N7 SA8 doub 316 n y C8 H8 SA8 sing 317 n n N7 C5 SA8 sing 318 n y C5 C6 SA8 sing 319 n y C5 C4 SA8 doub 320 n y C6 N6 SA8 sing 321 n n C6 N1 SA8 doub 322 n y N6 HN61 SA8 sing 323 n n N6 HN62 SA8 sing 324 n n N1 C2 SA8 sing 325 n y C2 N3 SA8 doub 326 n y C2 H3 SA8 sing 327 n n N3 C4 SA8 sing 328 n y # _atom_sites.entry_id 1Z3C _atom_sites.fract_transf_matrix[1][1] 0.01581 _atom_sites.fract_transf_matrix[1][2] 0.009128 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018255 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008941 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SA8 A 1 299 1 SA8 INH . C 3 HOH A 1 300 1 HOH WAT . C 3 HOH A 2 301 2 HOH WAT . C 3 HOH A 3 302 3 HOH WAT . C 3 HOH A 4 303 4 HOH WAT . C 3 HOH A 5 304 5 HOH WAT . C 3 HOH A 6 305 6 HOH WAT . C 3 HOH A 7 306 7 HOH WAT . C 3 HOH A 8 307 8 HOH WAT . C 3 HOH A 9 308 9 HOH WAT . C 3 HOH A 10 309 10 HOH WAT . C 3 HOH A 11 310 11 HOH WAT . C 3 HOH A 12 311 12 HOH WAT . C 3 HOH A 13 312 13 HOH WAT . C 3 HOH A 14 313 14 HOH WAT . C 3 HOH A 15 314 15 HOH WAT . C 3 HOH A 16 315 16 HOH WAT . C 3 HOH A 17 316 17 HOH WAT . C 3 HOH A 18 317 18 HOH WAT . C 3 HOH A 19 318 19 HOH WAT . C 3 HOH A 20 319 20 HOH WAT . C 3 HOH A 21 320 21 HOH WAT . C 3 HOH A 22 321 22 HOH WAT . C 3 HOH A 23 322 23 HOH WAT . C 3 HOH A 24 323 24 HOH WAT . C 3 HOH A 25 324 25 HOH WAT . C 3 HOH A 26 325 26 HOH WAT . C 3 HOH A 27 326 27 HOH WAT . C 3 HOH A 28 327 28 HOH WAT . C 3 HOH A 29 328 29 HOH WAT . C 3 HOH A 30 329 30 HOH WAT . C 3 HOH A 31 330 31 HOH WAT . C 3 HOH A 32 331 32 HOH WAT . C 3 HOH A 33 332 33 HOH WAT . C 3 HOH A 34 333 34 HOH WAT . C 3 HOH A 35 334 35 HOH WAT . C 3 HOH A 36 335 36 HOH WAT . C 3 HOH A 37 336 37 HOH WAT . C 3 HOH A 38 337 38 HOH WAT . C 3 HOH A 39 338 39 HOH WAT . C 3 HOH A 40 339 40 HOH WAT . C 3 HOH A 41 340 41 HOH WAT . C 3 HOH A 42 341 42 HOH WAT . C 3 HOH A 43 342 43 HOH WAT . C 3 HOH A 44 343 44 HOH WAT . C 3 HOH A 45 344 45 HOH WAT . C 3 HOH A 46 345 46 HOH WAT . C 3 HOH A 47 346 47 HOH WAT . C 3 HOH A 48 347 48 HOH WAT . C 3 HOH A 49 348 49 HOH WAT . C 3 HOH A 50 349 50 HOH WAT . C 3 HOH A 51 350 51 HOH WAT . C 3 HOH A 52 351 52 HOH WAT . C 3 HOH A 53 352 53 HOH WAT . C 3 HOH A 54 353 54 HOH WAT . C 3 HOH A 55 354 55 HOH WAT . C 3 HOH A 56 355 56 HOH WAT . C 3 HOH A 57 356 57 HOH WAT . C 3 HOH A 58 357 58 HOH WAT . C 3 HOH A 59 358 59 HOH WAT . C 3 HOH A 60 359 60 HOH WAT . C 3 HOH A 61 360 61 HOH WAT . C 3 HOH A 62 361 62 HOH WAT . C 3 HOH A 63 362 63 HOH WAT . C 3 HOH A 64 363 64 HOH WAT . C 3 HOH A 65 364 65 HOH WAT . C 3 HOH A 66 365 66 HOH WAT . C 3 HOH A 67 366 67 HOH WAT . C 3 HOH A 68 367 68 HOH WAT . C 3 HOH A 69 368 69 HOH WAT . C 3 HOH A 70 369 70 HOH WAT . C 3 HOH A 71 370 71 HOH WAT . C 3 HOH A 72 371 72 HOH WAT . C 3 HOH A 73 372 73 HOH WAT . C 3 HOH A 74 373 74 HOH WAT . C 3 HOH A 75 374 75 HOH WAT . C 3 HOH A 76 375 76 HOH WAT . C 3 HOH A 77 376 77 HOH WAT . C 3 HOH A 78 377 78 HOH WAT . C 3 HOH A 79 378 79 HOH WAT . C 3 HOH A 80 379 80 HOH WAT . C 3 HOH A 81 380 81 HOH WAT . C 3 HOH A 82 381 82 HOH WAT . C 3 HOH A 83 382 83 HOH WAT . C 3 HOH A 84 383 84 HOH WAT . C 3 HOH A 85 384 85 HOH WAT . C 3 HOH A 86 385 86 HOH WAT . C 3 HOH A 87 386 87 HOH WAT . C 3 HOH A 88 387 88 HOH WAT . C 3 HOH A 89 388 89 HOH WAT . C 3 HOH A 90 389 90 HOH WAT . C 3 HOH A 91 390 91 HOH WAT . C 3 HOH A 92 391 92 HOH WAT . C 3 HOH A 93 392 93 HOH WAT . C 3 HOH A 94 393 94 HOH WAT . C 3 HOH A 95 394 95 HOH WAT . C 3 HOH A 96 395 96 HOH WAT . C 3 HOH A 97 396 97 HOH WAT . C 3 HOH A 98 397 98 HOH WAT . C 3 HOH A 99 398 99 HOH WAT . C 3 HOH A 100 399 100 HOH WAT . C 3 HOH A 101 400 101 HOH WAT . C 3 HOH A 102 401 102 HOH WAT . C 3 HOH A 103 402 103 HOH WAT . C 3 HOH A 104 403 104 HOH WAT . C 3 HOH A 105 404 105 HOH WAT . C 3 HOH A 106 405 106 HOH WAT . C 3 HOH A 107 406 107 HOH WAT . C 3 HOH A 108 407 108 HOH WAT . C 3 HOH A 109 408 109 HOH WAT . C 3 HOH A 110 409 110 HOH WAT . C 3 HOH A 111 410 111 HOH WAT . C 3 HOH A 112 411 112 HOH WAT . C 3 HOH A 113 412 113 HOH WAT . C 3 HOH A 114 413 114 HOH WAT . C 3 HOH A 115 414 115 HOH WAT . C 3 HOH A 116 415 116 HOH WAT . C 3 HOH A 117 416 117 HOH WAT . C 3 HOH A 118 417 118 HOH WAT . C 3 HOH A 119 418 119 HOH WAT . C 3 HOH A 120 419 120 HOH WAT . C 3 HOH A 121 420 121 HOH WAT . C 3 HOH A 122 421 122 HOH WAT . C 3 HOH A 123 422 123 HOH WAT . C 3 HOH A 124 423 124 HOH WAT . C 3 HOH A 125 424 125 HOH WAT . C 3 HOH A 126 425 126 HOH WAT . C 3 HOH A 127 426 127 HOH WAT . C 3 HOH A 128 427 128 HOH WAT . C 3 HOH A 129 428 129 HOH WAT . C 3 HOH A 130 429 130 HOH WAT . C 3 HOH A 131 430 131 HOH WAT . C 3 HOH A 132 431 132 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SA8 . . . B 2 13.352 30.167 91.233 1 37.39 ? N SA8 299 A 1 HETATM 2 C CA SA8 . . . B 2 13.972 31.091 92.234 1 42.73 ? CA SA8 299 A 1 HETATM 3 C C SA8 . . . B 2 13.194 32.39 92.354 1 43.03 ? C SA8 299 A 1 HETATM 4 O O SA8 . . . B 2 12.194 32.558 91.653 1 45.99 ? O SA8 299 A 1 HETATM 5 O OXT SA8 . . . B 2 13.666 33.223 93.201 1 47.12 ? OXT SA8 299 A 1 HETATM 6 C CB SA8 . . . B 2 15.411 31.433 91.853 1 41.93 ? CB SA8 299 A 1 HETATM 7 C CG SA8 . . . B 2 15.929 30.538 90.805 1 39.07 ? CG SA8 299 A 1 HETATM 8 N ND SA8 . . . B 2 17.611 30.833 90.235 1 36.95 ? ND SA8 299 A 1 HETATM 9 C CE SA8 . . . B 2 17.431 32.339 89.277 1 41.63 ? CE SA8 299 A 1 HETATM 10 C C5' SA8 . . . B 2 17.804 29.604 89.059 1 39.92 ? C5' SA8 299 A 1 HETATM 11 C C4' SA8 . . . B 2 18.004 28.225 89.627 1 39.72 ? C4' SA8 299 A 1 HETATM 12 O O4' SA8 . . . B 2 18.056 27.354 88.499 1 40.78 ? O4' SA8 299 A 1 HETATM 13 C C3' SA8 . . . B 2 19.393 28.023 90.25 1 41.58 ? C3' SA8 299 A 1 HETATM 14 O O3' SA8 . . . B 2 19.148 27.926 91.688 1 44.33 ? O3' SA8 299 A 1 HETATM 15 C C2' SA8 . . . B 2 19.871 26.674 89.734 1 41.73 ? C2' SA8 299 A 1 HETATM 16 O O2' SA8 . . . B 2 20.478 25.73 90.581 1 45.02 ? O2' SA8 299 A 1 HETATM 17 C C1' SA8 . . . B 2 18.633 26.2 88.953 1 41.82 ? C1' SA8 299 A 1 HETATM 18 N N9 SA8 . . . B 2 18.914 25.337 87.839 1 43.36 ? N9 SA8 299 A 1 HETATM 19 C C8 SA8 . . . B 2 19.72 25.536 86.755 1 43.98 ? C8 SA8 299 A 1 HETATM 20 N N7 SA8 . . . B 2 19.733 24.53 85.926 1 46.72 ? N7 SA8 299 A 1 HETATM 21 C C5 SA8 . . . B 2 18.873 23.605 86.505 1 43.12 ? C5 SA8 299 A 1 HETATM 22 C C6 SA8 . . . B 2 18.449 22.299 86.113 1 44.45 ? C6 SA8 299 A 1 HETATM 23 N N6 SA8 . . . B 2 18.889 21.711 84.971 1 40.82 ? N6 SA8 299 A 1 HETATM 24 N N1 SA8 . . . B 2 17.559 21.614 86.922 1 43.07 ? N1 SA8 299 A 1 HETATM 25 C C2 SA8 . . . B 2 17.132 22.224 88.061 1 44.44 ? C2 SA8 299 A 1 HETATM 26 N N3 SA8 . . . B 2 17.475 23.45 88.524 1 41.92 ? N3 SA8 299 A 1 HETATM 27 C C4 SA8 . . . B 2 18.356 24.092 87.686 1 42.01 ? C4 SA8 299 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 27 #