data_1Z3F # _model_server_result.job_id Xdo4nVbS7e_V03m0pp3b0g _model_server_result.datetime_utc '2024-10-15 12:16:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1z3f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":42}' # _entry.id 1Z3F # _exptl.entry_id 1Z3F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 247.314 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ELLIPTICINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1Z3F _cell.length_a 24.86 _cell.length_b 24.86 _cell.length_c 78.86 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1Z3F _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B N7 DG 2 B DG 2 1_555 F CO CO . B CO 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? hydrog WATSON-CRICK hydrog1 A N3 DC 1 A DC 1 1_555 B N1 DG 6 B DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N4 DC 1 A DC 1 1_555 B O6 DG 6 B DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O2 DC 1 A DC 1 1_555 B N2 DG 6 B DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N1 DG 2 A DG 2 1_555 B N3 DC 5 B DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N2 DG 2 A DG 2 1_555 B O2 DC 5 B DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O6 DG 2 A DG 2 1_555 B N4 DC 5 B DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N1 DA 3 A DA 3 1_555 B N3 DT 4 B DT 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N6 DA 3 A DA 3 1_555 B O4 DT 4 B DT 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N3 DT 4 A DT 4 1_555 B N1 DA 3 B DA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A O4 DT 4 A DT 4 1_555 B N6 DA 3 B DA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N3 DC 5 A DC 5 1_555 B N1 DG 2 B DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N4 DC 5 A DC 5 1_555 B O6 DG 2 B DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A O2 DC 5 A DC 5 1_555 B N2 DG 2 B DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N1 DG 6 A DG 6 1_555 B N3 DC 1 B DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N2 DG 6 A DG 6 1_555 B O2 DC 1 B DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A O6 DG 6 A DG 6 1_555 B N4 DC 1 B DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C17 H15 N2 1' _chem_comp.formula_weight 247.314 _chem_comp.id EL _chem_comp.mon_nstd_flag . _chem_comp.name ELLIPTICINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 EL doub 150 n y C1 C6 EL sing 151 n y C1 H1 EL sing 152 n n C2 C3 EL sing 153 n y C2 H2 EL sing 154 n n C3 C4 EL doub 155 n y C3 H3 EL sing 156 n n C4 C5 EL sing 157 n y C4 N7 EL sing 158 n y C5 C6 EL doub 159 n y C5 C9 EL sing 160 n y C6 H6 EL sing 161 n n N7 C8 EL sing 162 n y N7 HN7 EL sing 163 n n C8 C9 EL doub 164 n y C8 C10 EL sing 165 n y C9 C14 EL sing 166 n y C10 C11 EL sing 167 n n C10 C12 EL doub 168 n y C11 H111 EL sing 169 n n C11 H112 EL sing 170 n n C11 H113 EL sing 171 n n C12 C13 EL sing 172 n y C12 C16 EL sing 173 n y C13 C14 EL doub 174 n y C13 C19 EL sing 175 n y C14 C15 EL sing 176 n n C15 H151 EL sing 177 n n C15 H152 EL sing 178 n n C15 H153 EL sing 179 n n C16 C17 EL doub 180 n y C16 H16 EL sing 181 n n C17 N18 EL sing 182 n y C17 H17 EL sing 183 n n N18 C19 EL doub 184 n y N18 H18 EL sing 185 n n C19 H19 EL sing 186 n n # _atom_sites.entry_id 1Z3F _atom_sites.fract_transf_matrix[1][1] 0.040225 _atom_sites.fract_transf_matrix[1][2] 0.023224 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.046448 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012681 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EL A 1 41 1 EL ELL . D 3 CO A 1 32 2 CO CO . E 2 EL B 1 42 2 EL ELL . F 3 CO B 1 31 1 CO CO . G 3 CO B 1 33 3 CO CO . H 4 HOH A 1 42 5 HOH HOH . H 4 HOH A 2 43 6 HOH HOH . H 4 HOH A 3 44 7 HOH HOH . H 4 HOH A 4 45 8 HOH HOH . H 4 HOH A 5 46 9 HOH HOH . H 4 HOH A 6 47 10 HOH HOH . H 4 HOH A 7 48 11 HOH HOH . H 4 HOH A 8 49 13 HOH HOH . H 4 HOH A 9 50 19 HOH HOH . H 4 HOH A 10 51 20 HOH HOH . H 4 HOH A 11 52 21 HOH HOH . H 4 HOH A 12 53 22 HOH HOH . H 4 HOH A 13 54 25 HOH HOH . I 4 HOH B 1 43 1 HOH HOH . I 4 HOH B 2 44 2 HOH HOH . I 4 HOH B 3 45 3 HOH HOH . I 4 HOH B 4 46 4 HOH HOH . I 4 HOH B 5 47 12 HOH HOH . I 4 HOH B 6 48 14 HOH HOH . I 4 HOH B 7 49 15 HOH HOH . I 4 HOH B 8 50 16 HOH HOH . I 4 HOH B 9 51 17 HOH HOH . I 4 HOH B 10 52 18 HOH HOH . I 4 HOH B 11 53 23 HOH HOH . I 4 HOH B 12 54 24 HOH HOH . I 4 HOH B 13 55 26 HOH HOH . I 4 HOH B 14 56 27 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EL . . . E 2 -0.242 10.901 30.048 1 34.23 ? C1 EL 42 B 1 HETATM 2 C C2 EL . . . E 2 0.528 9.999 30.813 1 32.76 ? C2 EL 42 B 1 HETATM 3 C C3 EL . . . E 2 1.921 10.237 30.882 1 32.02 ? C3 EL 42 B 1 HETATM 4 C C4 EL . . . E 2 2.522 11.345 30.263 1 29.83 ? C4 EL 42 B 1 HETATM 5 C C5 EL . . . E 2 1.742 12.224 29.521 1 28.22 ? C5 EL 42 B 1 HETATM 6 C C6 EL . . . E 2 0.352 12.011 29.421 1 31.09 ? C6 EL 42 B 1 HETATM 7 N N7 EL . . . E 2 3.814 11.823 30.172 1 27.92 ? N7 EL 42 B 1 HETATM 8 C C8 EL . . . E 2 3.922 12.95 29.433 1 26.25 ? C8 EL 42 B 1 HETATM 9 C C9 EL . . . E 2 2.641 13.273 28.985 1 26.52 ? C9 EL 42 B 1 HETATM 10 C C10 EL . . . E 2 4.996 13.757 29.106 1 25.3 ? C10 EL 42 B 1 HETATM 11 C C11 EL . . . E 2 6.366 13.366 29.617 1 27.08 ? C11 EL 42 B 1 HETATM 12 C C12 EL . . . E 2 4.783 14.87 28.295 1 24.54 ? C12 EL 42 B 1 HETATM 13 C C13 EL . . . E 2 3.487 15.184 27.842 1 24.94 ? C13 EL 42 B 1 HETATM 14 C C14 EL . . . E 2 2.393 14.373 28.186 1 25.25 ? C14 EL 42 B 1 HETATM 15 C C15 EL . . . E 2 0.989 14.696 27.735 1 26.28 ? C15 EL 42 B 1 HETATM 16 C C16 EL . . . E 2 5.851 15.687 27.914 1 24.8 ? C16 EL 42 B 1 HETATM 17 C C17 EL . . . E 2 5.595 16.805 27.112 1 25.33 ? C17 EL 42 B 1 HETATM 18 N N18 EL . . . E 2 4.351 17.106 26.672 1 26.24 ? N18 EL 42 B 1 HETATM 19 C C19 EL . . . E 2 3.308 16.32 27.026 1 25.65 ? C19 EL 42 B 1 # _model_server_stats.io_time_ms 78 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 19 #