data_1Z3L # _model_server_result.job_id fYM9-kxoU-qANzrlfdmNBg _model_server_result.datetime_utc '2024-12-19 10:47:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1z3l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":126}' # _entry.id 1Z3L # _exptl.entry_id 1Z3L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1Z3L _cell.length_a 44.464 _cell.length_b 44.464 _cell.length_c 97.469 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1Z3L _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1 A,B,C,D,E,F 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 6 E CYS 26 1_555 B SG CYS 64 E CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf2 B SG CYS 20 E CYS 40 1_555 B SG CYS 75 E CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 B SG CYS 38 E CYS 58 1_555 B SG CYS 90 E CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 B SG CYS 45 E CYS 65 1_555 B SG CYS 52 E CYS 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 A C LYS 7 S LYS 7 1_555 A N ABA 8 S ABA 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C ABA 8 S ABA 8 1_555 A N GLU 9 S GLU 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 A C HIS 12 S HIS 12 1_555 A N NLE 13 S NLE 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale4 A C NLE 13 S NLE 13 1_555 A N ASP 14 S ASP 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 326 n n S O2 SO4 doub 327 n n S O3 SO4 sing 328 n n S O4 SO4 sing 329 n n # _atom_sites.entry_id 1Z3L _atom_sites.fract_transf_matrix[1][1] 0.02249 _atom_sites.fract_transf_matrix[1][2] 0.012985 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025969 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01026 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SO4 E 1 125 125 SO4 SO4 . D 3 SO4 E 1 126 126 SO4 SO4 . E 4 HOH S 1 212 212 HOH HOH . E 4 HOH S 2 219 219 HOH HOH . E 4 HOH S 3 223 223 HOH HOH . E 4 HOH S 4 233 233 HOH HOH . E 4 HOH S 5 237 237 HOH HOH . E 4 HOH S 6 239 239 HOH HOH . E 4 HOH S 7 244 244 HOH HOH . E 4 HOH S 8 248 248 HOH HOH . E 4 HOH S 9 262 262 HOH HOH . F 4 HOH E 1 201 201 HOH HOH . F 4 HOH E 2 202 202 HOH HOH . F 4 HOH E 3 203 203 HOH HOH . F 4 HOH E 4 204 204 HOH HOH . F 4 HOH E 5 205 205 HOH HOH . F 4 HOH E 6 206 206 HOH HOH . F 4 HOH E 7 207 207 HOH HOH . F 4 HOH E 8 208 208 HOH HOH . F 4 HOH E 9 209 209 HOH HOH . F 4 HOH E 10 210 210 HOH HOH . F 4 HOH E 11 211 211 HOH HOH . F 4 HOH E 12 213 213 HOH HOH . F 4 HOH E 13 214 214 HOH HOH . F 4 HOH E 14 215 215 HOH HOH . F 4 HOH E 15 216 216 HOH HOH . F 4 HOH E 16 217 217 HOH HOH . F 4 HOH E 17 218 218 HOH HOH . F 4 HOH E 18 220 220 HOH HOH . F 4 HOH E 19 221 221 HOH HOH . F 4 HOH E 20 222 222 HOH HOH . F 4 HOH E 21 224 224 HOH HOH . F 4 HOH E 22 225 225 HOH HOH . F 4 HOH E 23 226 226 HOH HOH . F 4 HOH E 24 227 227 HOH HOH . F 4 HOH E 25 228 228 HOH HOH . F 4 HOH E 26 229 229 HOH HOH . F 4 HOH E 27 230 230 HOH HOH . F 4 HOH E 28 231 231 HOH HOH . F 4 HOH E 29 232 232 HOH HOH . F 4 HOH E 30 234 234 HOH HOH . F 4 HOH E 31 235 235 HOH HOH . F 4 HOH E 32 236 236 HOH HOH . F 4 HOH E 33 238 238 HOH HOH . F 4 HOH E 34 240 240 HOH HOH . F 4 HOH E 35 241 241 HOH HOH . F 4 HOH E 36 242 242 HOH HOH . F 4 HOH E 37 243 243 HOH HOH . F 4 HOH E 38 245 245 HOH HOH . F 4 HOH E 39 246 246 HOH HOH . F 4 HOH E 40 247 247 HOH HOH . F 4 HOH E 41 249 249 HOH HOH . F 4 HOH E 42 250 250 HOH HOH . F 4 HOH E 43 251 251 HOH HOH . F 4 HOH E 44 252 252 HOH HOH . F 4 HOH E 45 253 253 HOH HOH . F 4 HOH E 46 254 254 HOH HOH . F 4 HOH E 47 255 255 HOH HOH . F 4 HOH E 48 256 256 HOH HOH . F 4 HOH E 49 257 257 HOH HOH . F 4 HOH E 50 258 258 HOH HOH . F 4 HOH E 51 259 259 HOH HOH . F 4 HOH E 52 260 260 HOH HOH . F 4 HOH E 53 261 261 HOH HOH . F 4 HOH E 54 263 263 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . D 3 -22.109 -13.973 19.668 1 69.44 ? S SO4 126 E 1 HETATM 2 O O1 SO4 . . . D 3 -22.721 -13.184 20.754 1 69.73 ? O1 SO4 126 E 1 HETATM 3 O O2 SO4 . . . D 3 -21.574 -15.231 20.223 1 69.96 ? O2 SO4 126 E 1 HETATM 4 O O3 SO4 . . . D 3 -21.016 -13.197 19.054 1 68.37 ? O3 SO4 126 E 1 HETATM 5 O O4 SO4 . . . D 3 -23.127 -14.286 18.646 1 69.56 ? O4 SO4 126 E 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 5 #